Wall clock time and date at job start Tue Mar 31 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47186 * 2 1 4 4 H 1.08995 * 109.47386 * 54.86008 * 3 2 1 5 5 N 1.46505 * 109.47263 * 294.85753 * 3 2 1 6 6 C 1.38853 * 119.99901 * 157.69567 * 5 3 2 7 7 C 1.39568 * 119.84476 * 355.06097 * 6 5 3 8 8 C 1.36343 * 120.16212 * 179.71758 * 7 6 5 9 9 C 1.40885 * 119.83432 * 0.55048 * 8 7 6 10 10 C 1.41137 * 120.15370 * 179.69583 * 9 8 7 11 11 H 1.07998 * 119.99940 * 208.16310 * 10 9 8 12 12 C 1.39869 * 120.00016 * 28.16814 * 10 9 8 13 13 N 1.30910 * 119.99828 * 13.76039 * 12 10 9 14 14 Si 1.86803 * 120.00099 * 193.76651 * 12 10 9 15 15 H 1.48500 * 109.46755 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46994 * 119.99748 * 14 12 10 17 17 H 1.48496 * 109.46802 * 239.99805 * 14 12 10 18 18 C 1.40884 * 119.69066 * 359.72652 * 9 8 7 19 19 C 1.36343 * 119.83418 * 359.97438 * 18 9 8 20 20 C 1.50698 * 109.47054 * 174.86082 * 3 2 1 21 21 C 1.38231 * 120.00145 * 79.72520 * 20 3 2 22 22 C 1.38238 * 120.00101 * 179.81037 * 21 20 3 23 23 C 1.38237 * 119.99800 * 0.39801 * 22 21 20 24 24 C 1.38228 * 120.00043 * 359.85777 * 23 22 21 25 25 C 1.38235 * 119.99713 * 260.00022 * 20 3 2 26 26 H 1.08992 * 109.47054 * 185.12724 * 1 2 3 27 27 H 1.09005 * 109.46915 * 305.12960 * 1 2 3 28 28 H 1.09004 * 109.46764 * 65.12369 * 1 2 3 29 29 H 1.09001 * 109.46707 * 240.00275 * 2 1 3 30 30 H 1.08997 * 109.46746 * 120.00144 * 2 1 3 31 31 H 0.96996 * 119.99838 * 337.70039 * 5 3 2 32 32 H 1.08001 * 119.91656 * 359.97438 * 7 6 5 33 33 H 1.07998 * 120.07898 * 180.27476 * 8 7 6 34 34 H 0.96999 * 119.99717 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.08017 * 179.97438 * 18 9 8 36 36 H 1.07997 * 119.91580 * 179.97438 * 19 18 9 37 37 H 1.07996 * 120.00524 * 0.02562 * 21 20 3 38 38 H 1.07998 * 120.00288 * 180.23411 * 22 21 20 39 39 H 1.08002 * 120.00060 * 179.83469 * 23 22 21 40 40 H 1.08008 * 120.00188 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00289 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6036 1.9822 0.8403 5 7 1.6554 2.0964 -1.2533 6 6 1.5794 3.4813 -1.3188 7 6 1.7687 4.2427 -0.1645 8 6 1.7011 5.6032 -0.2226 9 6 1.4280 6.2397 -1.4494 10 6 1.3502 7.6474 -1.5159 11 1 0.7294 8.1192 -2.2632 12 6 2.0771 8.4314 -0.6141 13 7 3.0263 7.8899 0.1067 14 14 1.6935 10.2511 -0.4381 15 1 0.5860 10.6146 -1.3582 16 1 1.2894 10.5387 0.9616 17 1 2.9004 11.0465 -0.7784 18 6 1.2323 5.4645 -2.6094 19 6 1.3088 4.1051 -2.5376 20 6 3.5417 1.4443 0.1273 21 6 4.3296 1.1966 -0.9812 22 6 5.7071 1.2021 -0.8652 23 6 6.2965 1.4474 0.3609 24 6 5.5085 1.6899 1.4704 25 6 4.1310 1.6882 1.3537 26 1 -0.3633 -1.0235 0.0918 27 1 -0.3633 0.5914 0.8405 28 1 -0.3633 0.4323 -0.9324 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4539 1.5620 -2.0372 32 1 1.9733 3.7531 0.7761 33 1 1.8522 6.1913 0.6706 34 1 3.5301 8.4335 0.7324 35 1 1.0221 5.9459 -3.5531 36 1 1.1586 3.5095 -3.4259 37 1 3.8692 1.0021 -1.9385 38 1 6.3227 1.0123 -1.7320 39 1 7.3726 1.4491 0.4521 40 1 5.9690 1.8811 2.4285 41 1 3.5154 1.8777 2.2205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:01 Heat of formation + Delta-G solvation = 25.235745 kcal Electronic energy + Delta-G solvation = -21286.667754 eV Core-core repulsion = 18322.829679 eV Total energy + Delta-G solvation = -2963.838075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.67238 -39.40696 -37.37560 -35.35020 -33.27238 -31.90347 -31.68651 -31.28147 -30.06060 -27.12373 -25.77007 -23.63452 -23.17810 -22.78044 -22.28347 -20.81741 -19.12807 -17.93267 -17.79423 -16.89158 -16.59834 -16.22098 -15.66210 -15.42433 -14.97050 -14.78834 -14.55565 -14.26479 -14.20007 -13.97607 -13.66906 -13.57188 -13.35053 -13.07960 -12.80472 -12.75593 -12.59509 -12.30429 -12.03644 -11.89957 -11.83207 -11.71581 -11.51083 -11.14891 -11.05222 -10.28537 -9.74290 -9.53406 -9.36560 -8.49593 -8.12245 -6.01247 0.52020 0.57734 1.12699 1.21199 1.39469 1.54004 1.58028 2.28411 2.81186 2.89362 3.05292 3.79330 3.90724 4.02618 4.11305 4.23161 4.25628 4.31847 4.45803 4.52794 4.53750 4.66143 4.75761 4.84830 4.93491 5.03938 5.10817 5.14840 5.18837 5.20248 5.25571 5.31662 5.45114 5.47826 5.63261 5.65711 5.67501 5.78361 5.87807 5.99179 6.19615 6.21563 6.41891 6.69751 6.90101 7.11123 7.17528 7.35310 8.53109 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.004838 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.433483 B = 5786.695306 C = 6656.857546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.199 3.801 4 H 0.065 0.935 5 N -0.735 5.735 6 C 0.127 3.873 7 C -0.171 4.171 8 C -0.136 4.136 9 C 0.032 3.968 10 C -0.506 4.506 11 H 0.066 0.934 12 C 0.029 3.971 13 N -0.850 5.850 14 Si 0.976 3.024 15 H -0.260 1.260 16 H -0.267 1.267 17 H -0.270 1.270 18 C -0.192 4.192 19 C -0.168 4.168 20 C -0.100 4.100 21 C -0.113 4.113 22 C -0.134 4.134 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.132 4.132 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.397 0.603 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.279 0.721 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 -15.442 2.040 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C 0.092 3.908 4 H 0.083 0.917 5 N -0.369 5.369 6 C 0.028 3.972 7 C -0.193 4.193 8 C -0.156 4.156 9 C 0.029 3.971 10 C -0.538 4.538 11 H 0.084 0.916 12 C -0.181 4.181 13 N -0.479 5.479 14 Si 0.798 3.202 15 H -0.184 1.184 16 H -0.192 1.192 17 H -0.195 1.195 18 C -0.212 4.212 19 C -0.190 4.190 20 C -0.102 4.102 21 C -0.131 4.131 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.150 4.150 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.232 0.768 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.166 -15.412 2.375 15.744 hybrid contribution 0.049 1.092 -0.142 1.103 sum 2.215 -14.320 2.233 14.661 Atomic orbital electron populations 1.21718 0.94755 1.02029 1.01810 1.21687 0.96550 0.93292 1.03521 1.19720 0.88800 0.94317 0.87931 0.91697 1.43897 1.78818 1.01575 1.12570 1.17364 1.02729 0.84089 0.93040 1.20201 1.08962 0.93640 0.96521 1.20819 1.03950 0.93284 0.97562 1.17806 0.93855 0.93896 0.91504 1.19598 1.26297 0.92056 1.15846 0.91601 1.26587 0.92764 1.05069 0.93710 1.69930 1.17009 1.39493 1.21443 0.85250 0.79035 0.76949 0.78947 1.18408 1.19198 1.19485 1.20778 1.09756 0.93888 0.96757 1.20096 1.08890 0.94169 0.95885 1.20648 0.97107 0.98685 0.93727 1.21033 0.93903 0.99822 0.98339 1.21415 0.94992 1.00395 0.98364 1.21411 1.00787 1.00199 0.92892 1.21386 0.93725 0.99940 0.99707 1.21237 0.95638 1.00632 0.97506 0.91084 0.93483 0.93047 0.90679 0.89920 0.76798 0.88240 0.88821 0.91052 0.88690 0.86408 0.86164 0.84747 0.84307 0.84529 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.74 71.98 0.70 -2.13 16 2 C -0.11 -2.28 5.43 30.59 0.17 -2.11 16 3 C 0.20 5.48 1.89 44.24 0.08 5.56 16 4 H 0.07 2.01 6.26 -2.39 -0.01 1.99 16 5 N -0.73 -22.95 4.04 -322.10 -1.30 -24.26 16 6 C 0.13 5.31 6.60 38.67 0.26 5.57 16 7 C -0.17 -8.11 9.10 22.15 0.20 -7.91 16 8 C -0.14 -7.49 8.60 22.48 0.19 -7.30 16 9 C 0.03 1.82 5.55 -21.27 -0.12 1.70 16 10 C -0.51 -29.09 9.04 23.38 0.21 -28.88 16 11 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 12 C 0.03 1.58 5.19 85.23 0.44 2.02 16 13 N -0.85 -47.87 10.96 21.82 0.24 -47.63 16 14 Si 0.98 41.26 29.58 68.60 2.03 43.29 16 15 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 18 C -0.19 -9.70 9.74 22.48 0.22 -9.49 16 19 C -0.17 -7.33 9.82 22.15 0.22 -7.11 16 20 C -0.10 -2.91 4.80 -19.87 -0.10 -3.01 16 21 C -0.11 -3.21 9.32 22.27 0.21 -3.01 16 22 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 23 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 24 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 25 C -0.13 -3.74 9.67 22.27 0.22 -3.52 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.05 1.08 7.90 -2.39 -0.02 1.06 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.40 10.60 8.58 -92.71 -0.80 9.80 16 32 H 0.10 4.37 6.16 -2.91 -0.02 4.35 16 33 H 0.09 5.49 6.27 -2.91 -0.02 5.47 16 34 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 35 H 0.09 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 37 H 0.12 3.21 7.73 -2.91 -0.02 3.19 16 38 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.12 3.22 8.04 -2.91 -0.02 3.19 16 Total: -1.00 -64.46 340.52 4.76 -59.70 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: 0.22 Total: 38.13 kcal Atomic # 6 Polarization: -72.81 SS G_CDS: 3.57 Total: -69.23 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -1.06 Total: -71.89 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -64.46 4.76 -59.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.940 kcal (2) G-P(sol) polarization free energy of solvation -64.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds