Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 H 1.09002 * 109.46711 * 304.99309 * 3 2 1 5 5 N 1.46495 * 109.47527 * 64.99878 * 3 2 1 6 6 C 1.38857 * 119.99749 * 274.99823 * 5 3 2 7 7 C 1.39569 * 119.84367 * 359.73074 * 6 5 3 8 8 C 1.36337 * 120.16144 * 179.71640 * 7 6 5 9 9 C 1.40883 * 119.83405 * 0.55004 * 8 7 6 10 10 C 1.41141 * 120.15357 * 179.70026 * 9 8 7 11 11 H 1.08004 * 120.00265 * 155.11548 * 10 9 8 12 12 C 1.39865 * 120.00198 * 335.10674 * 10 9 8 13 13 N 1.30903 * 119.99883 * 342.13712 * 12 10 9 14 14 Si 1.86797 * 120.00412 * 162.12843 * 12 10 9 15 15 H 1.48502 * 109.46963 * 94.65351 * 14 12 10 16 16 H 1.48489 * 109.47456 * 214.65559 * 14 12 10 17 17 H 1.48499 * 109.46887 * 334.66141 * 14 12 10 18 18 C 1.40883 * 119.69286 * 359.72437 * 9 8 7 19 19 C 1.36337 * 119.83703 * 359.97438 * 18 9 8 20 20 C 1.50702 * 109.46796 * 184.99873 * 3 2 1 21 21 C 1.38234 * 120.00210 * 99.99870 * 20 3 2 22 22 C 1.38230 * 120.00289 * 179.97438 * 21 20 3 23 23 C 1.38242 * 119.99901 * 359.95715 * 22 21 20 24 24 C 1.38234 * 119.99611 * 359.97438 * 23 22 21 25 25 C 1.38226 * 120.00550 * 0.06757 * 24 23 22 26 26 H 1.08998 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47567 * 300.00595 * 1 2 3 28 28 H 1.09005 * 109.47290 * 60.00826 * 1 2 3 29 29 H 1.08996 * 109.47567 * 239.99405 * 2 1 3 30 30 H 1.09005 * 109.47225 * 119.99727 * 2 1 3 31 31 H 0.96996 * 120.00378 * 94.99899 * 5 3 2 32 32 H 1.08002 * 119.92034 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.08309 * 180.27214 * 8 7 6 34 34 H 0.96999 * 120.00039 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.08494 * 180.02562 * 18 9 8 36 36 H 1.07992 * 119.92622 * 179.97438 * 19 18 9 37 37 H 1.08005 * 119.99838 * 359.97188 * 21 20 3 38 38 H 1.08003 * 120.00227 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00071 * 179.72164 * 23 22 21 40 40 H 1.08005 * 119.99639 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.00395 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6523 2.0976 1.2517 6 6 0.3982 2.6817 1.3702 7 6 -0.4884 2.6477 0.2929 8 6 -1.7236 3.2141 0.4041 9 6 -2.0997 3.8449 1.6064 10 6 -3.3744 4.4389 1.7267 11 1 -3.8250 4.5577 2.7010 12 6 -4.0539 4.8740 0.5842 13 7 -3.4006 5.0598 -0.5348 14 14 -5.8936 5.1896 0.6551 15 1 -6.1388 6.6291 0.9257 16 1 -6.5101 4.8181 -0.6437 17 1 -6.4945 4.3729 1.7400 18 6 -1.1975 3.8804 2.6878 19 6 0.0321 3.3045 2.5645 20 6 3.5418 1.4443 -0.1238 21 6 4.1341 1.6871 -1.3490 22 6 5.5117 1.6893 -1.4625 23 6 6.2972 1.4495 -0.3505 24 6 5.7049 1.2081 0.8750 25 6 4.3273 1.2051 0.9883 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2718 2.1233 1.9977 32 1 -0.1969 2.1679 -0.6298 33 1 -2.4103 3.1832 -0.4289 34 1 -3.8719 5.3612 -1.3272 35 1 -1.4794 4.3619 3.6124 36 1 0.7250 3.3312 3.3924 37 1 3.5204 1.8751 -2.2177 38 1 5.9745 1.8786 -2.4198 39 1 7.3735 1.4467 -0.4400 40 1 6.3186 1.0203 1.7437 41 1 3.8646 1.0160 1.9457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = 46.951810 kcal Electronic energy + Delta-G solvation = -21121.655495 eV Core-core repulsion = 18158.759100 eV Total energy + Delta-G solvation = -2962.896396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.68755 -38.07514 -35.89701 -33.47266 -31.66937 -31.10280 -30.89156 -29.32540 -28.40810 -25.80685 -23.96531 -22.62603 -22.12089 -21.50175 -20.56899 -19.19317 -17.22388 -17.15612 -16.11412 -15.50554 -15.05204 -14.89541 -14.53890 -14.15084 -13.75651 -13.55372 -13.39466 -12.98420 -12.66260 -12.52513 -12.16470 -12.02295 -11.79408 -11.61454 -11.42884 -11.06231 -11.03057 -10.89133 -10.78824 -10.53547 -10.45772 -10.39505 -9.68037 -9.25423 -9.11766 -8.95096 -8.74428 -8.49819 -7.41711 -6.61956 -6.33493 -4.00827 1.32900 1.36997 2.93113 3.13158 3.16169 3.21099 3.37083 3.75162 4.07121 4.34058 4.74225 4.79381 4.86892 4.94453 5.08442 5.38180 5.41277 5.51498 5.52768 5.73477 5.85190 5.90087 5.99239 6.04413 6.17066 6.25733 6.32329 6.33283 6.43213 6.45932 6.52870 6.64664 6.88206 6.95711 6.98405 6.99974 7.22764 7.38110 7.59042 7.71931 7.86866 8.17763 8.32346 8.52058 8.72300 8.82662 9.08713 9.17995 10.39318 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.003621 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.706426 B = 7729.873470 C = 7863.934530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C 0.199 3.801 4 H 0.081 0.919 5 N -0.752 5.752 6 C 0.093 3.907 7 C -0.162 4.162 8 C -0.127 4.127 9 C 0.076 3.924 10 C -0.467 4.467 11 H 0.071 0.929 12 C 0.075 3.925 13 N -0.807 5.807 14 Si 0.901 3.099 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.263 1.263 18 C -0.189 4.189 19 C -0.159 4.159 20 C -0.077 4.077 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.112 4.112 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.383 0.617 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.275 0.725 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.391 -7.938 -1.868 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.167 4.167 3 C 0.092 3.908 4 H 0.098 0.902 5 N -0.388 5.388 6 C -0.004 4.004 7 C -0.184 4.184 8 C -0.147 4.147 9 C 0.073 3.927 10 C -0.499 4.499 11 H 0.089 0.911 12 C -0.140 4.140 13 N -0.435 5.435 14 Si 0.726 3.274 15 H -0.199 1.199 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.209 4.209 19 C -0.181 4.181 20 C -0.077 4.077 21 C -0.131 4.131 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.130 4.130 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.216 0.784 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.294 -7.895 -2.281 15.629 hybrid contribution -0.522 0.285 0.213 0.632 sum 12.773 -7.609 -2.068 15.011 Atomic orbital electron populations 1.22169 0.94750 1.00570 1.03885 1.22018 0.97165 0.96407 1.01101 1.19569 0.88314 0.93107 0.89773 0.90150 1.43973 1.15549 1.65411 1.13833 1.17300 0.86137 1.01876 0.95055 1.20348 0.95621 1.05863 0.96526 1.20919 0.95525 0.98903 0.99372 1.17482 0.92591 0.91353 0.91255 1.19363 1.01306 1.35600 0.93592 0.91051 1.25778 0.99813 0.93356 0.95020 1.69858 1.36961 1.34885 1.01781 0.86434 0.83359 0.79098 0.78543 1.19901 1.20305 1.18697 1.20518 0.94058 1.06632 0.99719 1.19793 0.97648 1.05197 0.95470 1.20188 0.95902 0.98054 0.93585 1.21060 0.94853 0.99960 0.97252 1.21113 0.93768 1.00276 0.98593 1.21106 0.99593 1.00894 0.93098 1.21114 0.94791 1.00325 0.97569 1.20964 0.93549 1.00086 0.98443 0.94169 0.90107 0.92418 0.92509 0.92326 0.78353 0.88512 0.86520 0.91395 0.89207 0.89773 0.85935 0.86202 0.86413 0.86283 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.22 37.15 0.31 -2.18 16 2 C -0.13 -1.79 5.59 -26.73 -0.15 -1.94 16 3 C 0.20 3.00 2.42 -69.08 -0.17 2.83 16 4 H 0.08 1.32 6.30 -51.93 -0.33 1.00 16 5 N -0.75 -12.88 5.10 -53.15 -0.27 -13.15 16 6 C 0.09 1.97 5.49 -83.69 -0.46 1.51 16 7 C -0.16 -3.65 6.62 -39.77 -0.26 -3.91 16 8 C -0.13 -3.28 8.63 -39.27 -0.34 -3.62 16 9 C 0.08 2.04 5.57 -106.79 -0.59 1.45 16 10 C -0.47 -12.72 9.03 -37.87 -0.34 -13.06 16 11 H 0.07 1.88 7.91 -52.48 -0.41 1.47 16 12 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 13 N -0.81 -21.43 10.98 55.54 0.61 -20.82 16 14 Si 0.90 19.29 29.60 -169.99 -5.03 14.25 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 18 C -0.19 -4.68 9.74 -39.27 -0.38 -5.06 16 19 C -0.16 -3.55 9.82 -39.77 -0.39 -3.94 16 20 C -0.08 -1.02 4.95 -104.62 -0.52 -1.54 16 21 C -0.11 -1.38 9.67 -39.59 -0.38 -1.76 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 24 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 25 C -0.11 -1.37 9.06 -39.58 -0.36 -1.73 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.51 5.40 -51.93 -0.28 1.23 16 28 H 0.06 0.93 6.34 -51.93 -0.33 0.60 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.38 5.99 6.86 -40.82 -0.28 5.71 16 32 H 0.10 1.99 3.99 -52.49 -0.21 1.78 16 33 H 0.12 3.14 6.18 -52.49 -0.32 2.81 16 34 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 35 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 36 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.12 1.36 8.04 -52.48 -0.42 0.94 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 41 H 0.12 1.38 6.91 -52.49 -0.36 1.02 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -28.02 328.02 -10.54 -38.57 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.47 Total: 12.38 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: -5.32 Total: -36.17 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.34 Total: -33.97 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.02 -10.54 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.517 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds