Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 H 1.09002 * 109.46711 * 304.99309 * 3 2 1 5 5 N 1.46495 * 109.47527 * 64.99878 * 3 2 1 6 6 C 1.38857 * 119.99749 * 274.99823 * 5 3 2 7 7 C 1.39569 * 119.84367 * 359.73074 * 6 5 3 8 8 C 1.36337 * 120.16144 * 179.71640 * 7 6 5 9 9 C 1.40883 * 119.83405 * 0.55004 * 8 7 6 10 10 C 1.41141 * 120.15357 * 179.70026 * 9 8 7 11 11 H 1.08004 * 120.00265 * 155.11548 * 10 9 8 12 12 C 1.39865 * 120.00198 * 335.10674 * 10 9 8 13 13 N 1.30903 * 119.99883 * 342.13712 * 12 10 9 14 14 Si 1.86797 * 120.00412 * 162.12843 * 12 10 9 15 15 H 1.48502 * 109.46963 * 94.65351 * 14 12 10 16 16 H 1.48489 * 109.47456 * 214.65559 * 14 12 10 17 17 H 1.48499 * 109.46887 * 334.66141 * 14 12 10 18 18 C 1.40883 * 119.69286 * 359.72437 * 9 8 7 19 19 C 1.36337 * 119.83703 * 359.97438 * 18 9 8 20 20 C 1.50702 * 109.46796 * 184.99873 * 3 2 1 21 21 C 1.38234 * 120.00210 * 99.99870 * 20 3 2 22 22 C 1.38230 * 120.00289 * 179.97438 * 21 20 3 23 23 C 1.38242 * 119.99901 * 359.95715 * 22 21 20 24 24 C 1.38234 * 119.99611 * 359.97438 * 23 22 21 25 25 C 1.38226 * 120.00550 * 0.06757 * 24 23 22 26 26 H 1.08998 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47567 * 300.00595 * 1 2 3 28 28 H 1.09005 * 109.47290 * 60.00826 * 1 2 3 29 29 H 1.08996 * 109.47567 * 239.99405 * 2 1 3 30 30 H 1.09005 * 109.47225 * 119.99727 * 2 1 3 31 31 H 0.96996 * 120.00378 * 94.99899 * 5 3 2 32 32 H 1.08002 * 119.92034 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.08309 * 180.27214 * 8 7 6 34 34 H 0.96999 * 120.00039 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.08494 * 180.02562 * 18 9 8 36 36 H 1.07992 * 119.92622 * 179.97438 * 19 18 9 37 37 H 1.08005 * 119.99838 * 359.97188 * 21 20 3 38 38 H 1.08003 * 120.00227 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00071 * 179.72164 * 23 22 21 40 40 H 1.08005 * 119.99639 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.00395 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6523 2.0976 1.2517 6 6 0.3982 2.6817 1.3702 7 6 -0.4884 2.6477 0.2929 8 6 -1.7236 3.2141 0.4041 9 6 -2.0997 3.8449 1.6064 10 6 -3.3744 4.4389 1.7267 11 1 -3.8250 4.5577 2.7010 12 6 -4.0539 4.8740 0.5842 13 7 -3.4006 5.0598 -0.5348 14 14 -5.8936 5.1896 0.6551 15 1 -6.1388 6.6291 0.9257 16 1 -6.5101 4.8181 -0.6437 17 1 -6.4945 4.3729 1.7400 18 6 -1.1975 3.8804 2.6878 19 6 0.0321 3.3045 2.5645 20 6 3.5418 1.4443 -0.1238 21 6 4.1341 1.6871 -1.3490 22 6 5.5117 1.6893 -1.4625 23 6 6.2972 1.4495 -0.3505 24 6 5.7049 1.2081 0.8750 25 6 4.3273 1.2051 0.9883 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2718 2.1233 1.9977 32 1 -0.1969 2.1679 -0.6298 33 1 -2.4103 3.1832 -0.4289 34 1 -3.8719 5.3612 -1.3272 35 1 -1.4794 4.3619 3.6124 36 1 0.7250 3.3312 3.3924 37 1 3.5204 1.8751 -2.2177 38 1 5.9745 1.8786 -2.4198 39 1 7.3735 1.4467 -0.4400 40 1 6.3186 1.0203 1.7437 41 1 3.8646 1.0160 1.9457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = 34.292813 kcal Electronic energy + Delta-G solvation = -21122.204431 eV Core-core repulsion = 18158.759100 eV Total energy + Delta-G solvation = -2963.445331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80908 -39.57757 -37.37557 -35.25267 -33.19713 -32.27516 -31.77241 -31.09185 -30.10367 -27.22722 -25.60406 -23.72735 -23.31114 -22.88148 -22.21771 -20.63038 -19.13870 -18.33406 -17.48130 -16.87685 -16.58566 -16.08692 -15.83113 -15.38325 -15.27867 -14.85652 -14.57824 -14.24077 -14.20065 -13.84863 -13.75208 -13.56559 -13.25426 -13.10999 -12.78618 -12.71270 -12.52803 -12.32636 -12.13623 -11.93389 -11.79608 -11.63844 -11.55323 -11.08846 -10.89763 -10.31572 -9.79944 -9.61180 -9.30436 -8.53066 -8.09908 -5.97928 0.44464 0.52083 1.14009 1.22785 1.40233 1.52816 1.60508 2.28270 2.79852 2.87374 3.01682 3.69483 3.88626 3.98030 4.14835 4.21578 4.27547 4.30881 4.49990 4.52797 4.55213 4.62693 4.72397 4.79304 4.97036 5.03305 5.09142 5.11695 5.16738 5.17455 5.28490 5.34825 5.48569 5.53345 5.59243 5.64006 5.66013 5.77115 5.86281 6.00282 6.13275 6.22078 6.43416 6.70587 6.90622 7.11413 7.16790 7.33910 8.50054 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.003621 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.706426 B = 7729.873470 C = 7863.934530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.200 3.800 4 H 0.064 0.936 5 N -0.742 5.742 6 C 0.117 3.883 7 C -0.163 4.163 8 C -0.145 4.145 9 C 0.037 3.963 10 C -0.507 4.507 11 H 0.065 0.935 12 C 0.033 3.967 13 N -0.841 5.841 14 Si 0.974 3.026 15 H -0.266 1.266 16 H -0.268 1.268 17 H -0.262 1.262 18 C -0.200 4.200 19 C -0.169 4.169 20 C -0.094 4.094 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.123 4.123 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.393 0.607 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.281 0.719 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.650 -8.908 -2.016 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.094 3.906 4 H 0.082 0.918 5 N -0.377 5.377 6 C 0.018 3.982 7 C -0.185 4.185 8 C -0.165 4.165 9 C 0.034 3.966 10 C -0.539 4.539 11 H 0.083 0.917 12 C -0.179 4.179 13 N -0.470 5.470 14 Si 0.795 3.205 15 H -0.191 1.191 16 H -0.193 1.193 17 H -0.186 1.186 18 C -0.220 4.220 19 C -0.191 4.191 20 C -0.095 4.095 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.141 4.141 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.229 0.771 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.602 -8.886 -2.426 18.118 hybrid contribution -0.958 0.489 0.258 1.106 sum 14.644 -8.397 -2.169 17.020 Atomic orbital electron populations 1.22081 0.96216 1.00989 1.01808 1.21935 0.95563 0.95914 1.02376 1.19611 0.90034 0.93126 0.87853 0.91810 1.44019 1.14020 1.64402 1.15232 1.17366 0.87137 0.99682 0.93980 1.20465 0.94817 1.05453 0.97775 1.20836 0.96612 1.00303 0.98729 1.17788 0.93481 0.92830 0.92475 1.19581 1.02549 1.37687 0.94059 0.91690 1.26569 1.04292 0.92696 0.94306 1.69921 1.38758 1.35793 1.02479 0.85329 0.77306 0.79086 0.78737 1.19120 1.19255 1.18619 1.20695 0.94873 1.07024 0.99391 1.20067 0.97340 1.04889 0.96785 1.20024 0.94479 1.00293 0.94709 1.21230 0.95909 1.00356 0.97070 1.21424 0.93170 0.99489 0.99975 1.21502 1.01089 0.99347 0.92610 1.21429 0.94380 0.99506 0.98774 1.21091 0.94394 1.00448 0.98202 0.92597 0.93199 0.93323 0.90544 0.91634 0.77106 0.86830 0.88513 0.90842 0.88935 0.86895 0.85621 0.83977 0.83705 0.83999 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 8.22 71.98 0.59 -4.18 16 2 C -0.12 -3.13 5.59 30.59 0.17 -2.96 16 3 C 0.20 5.74 2.42 44.25 0.11 5.85 16 4 H 0.06 2.06 6.30 -2.39 -0.02 2.04 16 5 N -0.74 -24.37 5.10 -322.08 -1.64 -26.01 16 6 C 0.12 4.93 5.49 38.67 0.21 5.14 16 7 C -0.16 -7.50 6.62 22.15 0.15 -7.36 16 8 C -0.14 -7.79 8.63 22.47 0.19 -7.59 16 9 C 0.04 2.08 5.57 -21.27 -0.12 1.96 16 10 C -0.51 -28.92 9.03 23.38 0.21 -28.71 16 11 H 0.06 3.61 7.91 -2.91 -0.02 3.59 16 12 C 0.03 1.77 5.13 85.23 0.44 2.21 16 13 N -0.84 -46.35 10.98 21.82 0.24 -46.11 16 14 Si 0.97 40.64 29.60 68.60 2.03 42.67 16 15 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 18 C -0.20 -10.14 9.74 22.47 0.22 -9.92 16 19 C -0.17 -7.46 9.82 22.15 0.22 -7.24 16 20 C -0.09 -2.33 4.95 -19.86 -0.10 -2.43 16 21 C -0.13 -2.86 9.67 22.27 0.22 -2.64 16 22 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 24 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.12 -2.69 9.06 22.27 0.20 -2.49 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.85 5.40 -2.39 -0.01 1.84 16 28 H 0.05 1.57 6.34 -2.38 -0.02 1.55 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.39 11.49 6.86 -92.71 -0.64 10.85 16 32 H 0.11 4.75 3.99 -2.91 -0.01 4.73 16 33 H 0.10 5.51 6.18 -2.91 -0.02 5.49 16 34 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 35 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.13 2.63 8.04 -2.91 -0.02 2.60 16 38 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 40 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.12 2.53 6.91 -2.91 -0.02 2.51 16 Total: -1.00 -62.66 328.02 4.40 -58.26 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: 0.40 Total: 37.52 kcal Atomic # 6 Polarization: -69.71 SS G_CDS: 3.38 Total: -66.33 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.40 Total: -72.12 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -62.66 4.40 -58.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.550 kcal (2) G-P(sol) polarization free energy of solvation -62.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds