Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46933 * 2 1 4 4 C 1.52998 * 109.46932 * 119.99807 * 2 1 3 5 5 N 1.46506 * 109.47320 * 65.00364 * 4 2 1 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 2 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46927 * 59.99717 * 11 9 7 13 13 H 1.48496 * 109.47287 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47040 * 299.99940 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 2 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 N 1.46491 * 109.46957 * 179.72354 * 17 15 5 19 19 C 1.34343 * 126.76294 * 125.00176 * 18 17 15 20 20 N 1.30891 * 108.21329 * 179.97438 * 19 18 17 21 21 C 1.33652 * 109.76881 * 359.97438 * 20 19 18 22 22 N 1.39602 * 125.60764 * 179.97438 * 21 20 19 23 23 N 1.31206 * 108.77693 * 359.72425 * 21 20 19 24 24 H 1.08998 * 109.47363 * 60.00456 * 1 2 3 25 25 H 1.09003 * 109.47300 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47278 * 299.99945 * 1 2 3 27 27 H 1.08999 * 109.46720 * 239.99572 * 2 1 3 28 28 H 1.09009 * 109.46993 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47271 * 299.99434 * 3 2 1 30 30 H 1.08995 * 109.47288 * 60.00238 * 3 2 1 31 31 H 1.08994 * 109.47354 * 305.00255 * 4 2 1 32 32 H 1.09001 * 109.47139 * 184.99829 * 4 2 1 33 33 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 34 34 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 35 35 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 37 37 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 38 38 H 1.07997 * 125.89247 * 0.02795 * 19 18 17 39 39 H 0.96998 * 120.00343 * 359.97438 * 22 21 20 40 40 H 0.97008 * 119.99943 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1329 1.1906 6 6 0.3746 -2.5659 1.7613 7 6 0.5716 -2.9407 3.2075 8 1 1.5507 -2.8637 3.6568 9 6 -0.4981 -3.3821 3.9573 10 7 -1.6903 -3.4764 3.4101 11 14 -0.2540 -3.8461 5.7502 12 1 0.2497 -2.6687 6.5020 13 1 -1.5492 -4.2851 6.3287 14 1 0.7317 -4.9527 5.8453 15 6 2.4715 -3.0331 0.6116 16 8 2.1504 -4.2016 0.5627 17 6 3.7888 -2.5886 0.0301 18 7 4.4908 -3.7460 -0.5299 19 6 4.9533 -3.8762 -1.7845 20 7 5.5185 -5.0519 -1.8922 21 6 5.4370 -5.7011 -0.7268 22 7 5.9326 -6.9813 -0.4732 23 7 4.8192 -4.9352 0.1410 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2617 2.1369 32 1 3.1263 -0.6443 1.2952 33 1 -0.3484 -1.7531 1.6919 34 1 0.0042 -3.4298 1.2093 35 1 -2.4428 -3.7865 3.9376 36 1 3.6098 -1.8563 -0.7573 37 1 4.3982 -2.1381 0.8135 38 1 4.8734 -3.1378 -2.5685 39 1 6.3810 -7.4760 -1.1768 40 1 5.8285 -7.3762 0.4067 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040331012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = 61.244136 kcal Electronic energy + Delta-G solvation = -22531.432119 eV Core-core repulsion = 19190.598973 eV Total energy + Delta-G solvation = -3340.833146 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72502 -39.25308 -36.48115 -34.85911 -33.61917 -32.68535 -32.25678 -30.43390 -28.47765 -26.92135 -26.71361 -25.41544 -22.99030 -21.82519 -21.08222 -20.33849 -18.59220 -17.33139 -16.74657 -16.46758 -16.43231 -15.77540 -15.28254 -14.91523 -14.66920 -14.57018 -14.12862 -13.78054 -13.73009 -13.13978 -12.58998 -12.42422 -12.15524 -12.04637 -11.65558 -11.48366 -11.40990 -11.06999 -10.95554 -10.94917 -10.74424 -10.55706 -10.33079 -10.14404 -9.70406 -9.64916 -9.57634 -9.00155 -8.42806 -8.00795 -7.71349 -6.05270 -4.09486 1.95076 2.41948 3.22582 3.31728 3.36252 3.38154 3.40852 3.59854 3.83575 4.43406 4.59911 4.72182 4.78424 4.98381 5.08014 5.15718 5.28164 5.31659 5.39911 5.59800 5.71985 5.79262 6.03132 6.06159 6.08494 6.09323 6.22598 6.45296 6.59760 6.62507 6.88452 7.06756 7.39272 7.49055 7.53132 7.57468 7.90803 8.22118 8.30331 8.60186 8.86127 9.00662 9.55329 11.02721 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.005926 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.190521 B = 4724.038697 C = 6507.285894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.111 3.889 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.492 3.508 16 O -0.509 6.509 17 C 0.112 3.888 18 N -0.360 5.360 19 C 0.269 3.731 20 N -0.576 5.576 21 C 0.457 3.543 22 N -0.830 5.830 23 N -0.330 5.330 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.216 0.784 39 H 0.410 0.590 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.736 7.453 -9.617 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.202 4.202 4 C -0.014 4.014 5 N -0.325 5.325 6 C 0.127 3.873 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.276 3.724 16 O -0.383 6.383 17 C -0.015 4.015 18 N -0.151 5.151 19 C -0.028 4.028 20 N -0.311 5.311 21 C 0.086 3.914 22 N -0.387 5.387 23 N -0.167 5.167 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.233 0.767 39 H 0.240 0.760 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 11.271 6.584 -9.128 15.929 hybrid contribution 0.030 -0.241 0.994 1.023 sum 11.301 6.343 -8.135 15.301 Atomic orbital electron populations 1.21932 0.94428 1.03181 1.01120 1.21605 0.97391 0.95879 0.98516 1.21792 1.00525 0.95911 1.01986 1.21624 0.98878 0.82425 0.98442 1.48203 1.21823 1.06082 1.56391 1.19407 0.78259 0.96398 0.93244 1.21400 0.95059 1.44603 0.95499 0.92567 1.24910 0.95045 0.95338 0.98684 1.69912 0.99837 1.46942 1.36717 0.86579 0.77366 0.79004 0.84613 1.20258 1.21186 1.20194 1.20107 0.85182 0.86816 0.80339 1.90772 1.73804 1.16856 1.56870 1.21744 0.93839 0.84766 1.01145 1.49543 1.43264 1.13397 1.08874 1.25714 0.93504 0.95381 0.88209 1.70142 1.29640 1.06271 1.25005 1.20495 0.93893 0.89296 0.87758 1.40846 1.68089 1.12662 1.17083 1.78461 1.25767 0.94362 1.18110 0.93535 0.91224 0.92398 0.91744 0.92860 0.92734 0.92364 0.89487 0.91810 0.93958 0.94152 0.92678 0.86147 0.87207 0.76724 0.76038 0.75778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.18 37.16 0.30 -1.76 16 2 C -0.11 -1.34 3.12 -90.62 -0.28 -1.62 16 3 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 4 C 0.11 1.58 4.71 -4.04 -0.02 1.56 16 5 N -0.59 -11.61 2.28 -175.06 -0.40 -12.01 16 6 C 0.25 6.16 4.23 -5.20 -0.02 6.13 16 7 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 11 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 15 C 0.49 9.85 7.71 -10.98 -0.08 9.77 16 16 O -0.51 -13.10 15.33 5.55 0.09 -13.01 16 17 C 0.11 1.54 5.58 -5.20 -0.03 1.51 16 18 N -0.36 -5.75 3.40 -63.83 -0.22 -5.97 16 19 C 0.27 3.58 12.61 -90.68 -1.14 2.44 16 20 N -0.58 -9.09 11.21 -14.98 -0.17 -9.26 16 21 C 0.46 7.77 9.44 -321.17 -3.03 4.74 16 22 N -0.83 -10.68 9.13 30.00 0.27 -10.40 16 23 N -0.33 -6.37 11.85 29.99 0.36 -6.02 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.18 5.89 -51.93 -0.31 0.88 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.70 7.32 -51.93 -0.38 0.32 16 28 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 33 H 0.04 1.05 5.98 -51.93 -0.31 0.74 16 34 H 0.04 1.17 7.42 -51.93 -0.39 0.79 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 36 H 0.12 1.10 7.24 -51.93 -0.38 0.72 16 37 H 0.11 1.32 7.40 -51.93 -0.38 0.94 16 38 H 0.22 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.41 4.16 8.96 -40.82 -0.37 3.79 16 40 H 0.41 4.77 8.96 -40.82 -0.37 4.40 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -37.71 335.53 -9.39 -47.11 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.71 Total: 4.78 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -4.39 Total: 8.42 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: 0.58 Total: -69.33 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.71 -9.39 -47.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040331012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.351 kcal (2) G-P(sol) polarization free energy of solvation -37.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds