Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46933 * 2 1 4 4 C 1.52998 * 109.46932 * 119.99807 * 2 1 3 5 5 N 1.46506 * 109.47320 * 65.00364 * 4 2 1 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 2 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46927 * 59.99717 * 11 9 7 13 13 H 1.48496 * 109.47287 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47040 * 299.99940 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 2 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 N 1.46491 * 109.46957 * 179.72354 * 17 15 5 19 19 C 1.34343 * 126.76294 * 125.00176 * 18 17 15 20 20 N 1.30891 * 108.21329 * 179.97438 * 19 18 17 21 21 C 1.33652 * 109.76881 * 359.97438 * 20 19 18 22 22 N 1.39602 * 125.60764 * 179.97438 * 21 20 19 23 23 N 1.31206 * 108.77693 * 359.72425 * 21 20 19 24 24 H 1.08998 * 109.47363 * 60.00456 * 1 2 3 25 25 H 1.09003 * 109.47300 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47278 * 299.99945 * 1 2 3 27 27 H 1.08999 * 109.46720 * 239.99572 * 2 1 3 28 28 H 1.09009 * 109.46993 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47271 * 299.99434 * 3 2 1 30 30 H 1.08995 * 109.47288 * 60.00238 * 3 2 1 31 31 H 1.08994 * 109.47354 * 305.00255 * 4 2 1 32 32 H 1.09001 * 109.47139 * 184.99829 * 4 2 1 33 33 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 34 34 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 35 35 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 37 37 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 38 38 H 1.07997 * 125.89247 * 0.02795 * 19 18 17 39 39 H 0.96998 * 120.00343 * 359.97438 * 22 21 20 40 40 H 0.97008 * 119.99943 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1329 1.1906 6 6 0.3746 -2.5659 1.7613 7 6 0.5716 -2.9407 3.2075 8 1 1.5507 -2.8637 3.6568 9 6 -0.4981 -3.3821 3.9573 10 7 -1.6903 -3.4764 3.4101 11 14 -0.2540 -3.8461 5.7502 12 1 0.2497 -2.6687 6.5020 13 1 -1.5492 -4.2851 6.3287 14 1 0.7317 -4.9527 5.8453 15 6 2.4715 -3.0331 0.6116 16 8 2.1504 -4.2016 0.5627 17 6 3.7888 -2.5886 0.0301 18 7 4.4908 -3.7460 -0.5299 19 6 4.9533 -3.8762 -1.7845 20 7 5.5185 -5.0519 -1.8922 21 6 5.4370 -5.7011 -0.7268 22 7 5.9326 -6.9813 -0.4732 23 7 4.8192 -4.9352 0.1410 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2617 2.1369 32 1 3.1263 -0.6443 1.2952 33 1 -0.3484 -1.7531 1.6919 34 1 0.0042 -3.4298 1.2093 35 1 -2.4428 -3.7865 3.9376 36 1 3.6098 -1.8563 -0.7573 37 1 4.3982 -2.1381 0.8135 38 1 4.8734 -3.1378 -2.5685 39 1 6.3810 -7.4760 -1.1768 40 1 5.8285 -7.3762 0.4067 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040331012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = 35.851724 kcal Electronic energy + Delta-G solvation = -22532.533217 eV Core-core repulsion = 19190.598973 eV Total energy + Delta-G solvation = -3341.934244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.85139 -40.75820 -37.80781 -36.01462 -35.33789 -34.15007 -33.70427 -31.64165 -30.15355 -28.08870 -27.89829 -26.80781 -24.77240 -23.03867 -22.26509 -21.40202 -20.01175 -18.70201 -18.47710 -17.97220 -17.51829 -17.14596 -16.62596 -16.44437 -16.14507 -15.78507 -15.39019 -15.01830 -14.89178 -14.40848 -14.24081 -13.70700 -13.59843 -13.40272 -13.04705 -12.91986 -12.71264 -12.65139 -12.54195 -12.16446 -12.07052 -12.05329 -11.81335 -11.49217 -11.48470 -10.88683 -10.84394 -10.63256 -10.51186 -9.38828 -9.14536 -8.23103 -6.36868 0.86272 1.32834 1.37149 1.37607 1.44274 1.76302 2.20514 2.29375 2.40940 2.68344 3.06378 3.49251 3.67226 3.88012 3.98816 4.09551 4.17789 4.30017 4.39755 4.68373 4.75241 4.88403 4.98297 5.00744 5.06938 5.11748 5.20463 5.24875 5.35992 5.46875 5.49152 5.56021 5.62146 5.85595 5.98025 6.08256 6.47121 6.58213 6.70126 6.78246 7.27929 7.46683 7.52823 8.83132 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.005926 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.190521 B = 4724.038697 C = 6507.285894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.103 3.897 5 N -0.594 5.594 6 C 0.265 3.735 7 C -0.542 4.542 8 H 0.049 0.951 9 C 0.009 3.991 10 N -0.928 5.928 11 Si 0.961 3.039 12 H -0.258 1.258 13 H -0.278 1.278 14 H -0.283 1.283 15 C 0.481 3.519 16 O -0.580 6.580 17 C 0.124 3.876 18 N -0.373 5.373 19 C 0.287 3.713 20 N -0.599 5.599 21 C 0.446 3.554 22 N -0.819 5.819 23 N -0.394 5.394 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.039 0.961 34 H -0.014 1.014 35 H 0.266 0.734 36 H 0.180 0.820 37 H 0.135 0.865 38 H 0.276 0.724 39 H 0.421 0.579 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.984 9.928 -10.540 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.195 4.195 4 C -0.019 4.019 5 N -0.325 5.325 6 C 0.144 3.856 7 C -0.581 4.581 8 H 0.068 0.932 9 C -0.190 4.190 10 N -0.567 5.567 11 Si 0.786 3.214 12 H -0.182 1.182 13 H -0.203 1.203 14 H -0.209 1.209 15 C 0.268 3.732 16 O -0.459 6.459 17 C -0.001 4.001 18 N -0.165 5.165 19 C -0.009 4.009 20 N -0.333 5.333 21 C 0.074 3.926 22 N -0.378 5.378 23 N -0.232 5.232 24 H 0.086 0.914 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.057 0.943 34 H 0.004 0.996 35 H 0.075 0.925 36 H 0.198 0.802 37 H 0.152 0.848 38 H 0.291 0.709 39 H 0.253 0.747 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 13.556 9.111 -10.062 19.184 hybrid contribution -0.700 -1.000 1.211 1.719 sum 12.857 8.110 -8.850 17.590 Atomic orbital electron populations 1.21916 0.96747 1.00484 1.01602 1.21563 0.95325 0.97934 0.97669 1.21744 1.02189 0.93188 1.02357 1.22007 1.01451 0.79088 0.99323 1.48158 1.19995 1.08645 1.55676 1.18776 0.81153 0.94209 0.91466 1.21730 0.94741 1.44637 0.97000 0.93234 1.25791 0.94792 0.95227 1.03187 1.70033 1.00610 1.47724 1.38374 0.85571 0.77369 0.78918 0.79580 1.18219 1.20282 1.20926 1.21264 0.86885 0.85778 0.79310 1.90739 1.75702 1.19919 1.59565 1.21934 0.89665 0.84865 1.03618 1.49599 1.44053 1.13102 1.09700 1.26903 0.90611 0.95342 0.88079 1.70185 1.31063 1.07465 1.24624 1.20920 0.93465 0.90148 0.88059 1.40900 1.67440 1.11696 1.17761 1.78331 1.27846 0.96461 1.20543 0.91429 0.95421 0.93580 0.89861 0.90127 0.91495 0.92975 0.91193 0.87468 0.94308 0.99556 0.92506 0.80246 0.84770 0.70902 0.74667 0.75344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.18 71.98 0.59 -3.49 16 2 C -0.11 -2.15 3.12 -10.80 -0.03 -2.18 16 3 C -0.14 -1.83 9.19 71.98 0.66 -1.16 16 4 C 0.10 2.72 4.71 86.38 0.41 3.13 16 5 N -0.59 -23.42 2.28 -826.15 -1.88 -25.30 16 6 C 0.27 14.04 4.23 85.63 0.36 14.41 16 7 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.01 0.52 5.46 84.66 0.46 0.99 16 10 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 11 Si 0.96 45.92 29.54 68.60 2.03 47.94 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 15 C 0.48 19.18 7.71 87.66 0.68 19.85 16 16 O -0.58 -31.18 15.33 -3.04 -0.05 -31.22 16 17 C 0.12 3.01 5.58 85.64 0.48 3.49 16 18 N -0.37 -11.09 3.40 -355.85 -1.21 -12.30 16 19 C 0.29 6.63 12.61 180.37 2.27 8.91 16 20 N -0.60 -17.78 11.21 -201.31 -2.26 -20.03 16 21 C 0.45 14.98 9.44 260.92 2.46 17.44 16 22 N -0.82 -21.02 9.13 -59.01 -0.54 -21.56 16 23 N -0.39 -15.16 11.85 -59.03 -0.70 -15.86 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.03 0.96 5.89 -2.39 -0.01 0.95 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.42 7.32 -2.39 -0.02 1.41 16 28 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 32 H 0.11 1.91 6.43 -2.39 -0.02 1.89 16 33 H 0.04 2.06 5.98 -2.39 -0.01 2.04 16 34 H -0.01 -0.86 7.42 -2.38 -0.02 -0.88 16 35 H 0.27 15.36 8.31 -92.72 -0.77 14.59 16 36 H 0.18 2.12 7.24 -2.38 -0.02 2.11 16 37 H 0.13 2.63 7.40 -2.39 -0.02 2.61 16 38 H 0.28 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.42 8.35 8.96 -92.71 -0.83 7.52 16 40 H 0.42 9.80 8.96 -92.70 -0.83 8.97 16 Total: -1.00 -90.84 335.53 3.67 -87.17 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.59 Total: 17.58 kcal Atomic # 6 Polarization: 21.51 SS G_CDS: 8.58 Total: 30.09 kcal Atomic # 7 Polarization: -145.25 SS G_CDS: -6.30 Total: -151.56 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.05 Total: -31.22 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -90.84 3.67 -87.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040331012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.019 kcal (2) G-P(sol) polarization free energy of solvation -90.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds