Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35955 * 117.00202 * 2 1 4 4 C 1.38660 * 120.06337 * 359.72235 * 3 2 1 5 5 C 1.38180 * 119.96956 * 180.27641 * 4 3 2 6 6 C 1.38260 * 120.09703 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93600 * 180.02562 * 6 5 4 8 8 N 1.46891 * 109.47358 * 263.69391 * 7 6 5 9 9 C 1.46901 * 111.00349 * 198.66300 * 8 7 6 10 10 C 1.50694 * 109.47658 * 163.28303 * 9 8 7 11 11 H 1.08003 * 119.99613 * 357.68866 * 10 9 8 12 12 C 1.37878 * 120.00285 * 177.67997 * 10 9 8 13 13 N 1.31517 * 119.99894 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99977 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47173 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47263 * 120.00385 * 14 12 10 17 17 H 1.48506 * 109.47201 * 240.00277 * 14 12 10 18 18 C 1.46897 * 111.00152 * 74.70872 * 8 7 6 19 19 C 1.53000 * 109.47281 * 70.52987 * 18 8 7 20 20 C 1.53007 * 109.47434 * 190.52905 * 18 8 7 21 21 C 1.38253 * 120.12550 * 0.04802 * 6 5 4 22 22 C 1.38335 * 120.03200 * 359.95136 * 21 6 5 23 23 F 1.35098 * 120.04866 * 180.02562 * 22 21 6 24 24 H 1.09005 * 109.47359 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47333 * 300.00139 * 1 2 3 26 26 H 1.08994 * 109.47007 * 59.99821 * 1 2 3 27 27 H 1.07995 * 120.01080 * 0.25804 * 4 3 2 28 28 H 1.08000 * 119.94750 * 179.97438 * 5 4 3 29 29 H 1.09007 * 109.46844 * 23.69875 * 7 6 5 30 30 H 1.09005 * 109.46735 * 143.69231 * 7 6 5 31 31 H 1.09003 * 109.47195 * 283.28469 * 9 8 7 32 32 H 1.09000 * 109.46643 * 43.28324 * 9 8 7 33 33 H 0.96993 * 119.99592 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.47672 * 310.52919 * 18 8 7 35 35 H 1.08999 * 109.47137 * 68.12153 * 19 18 8 36 36 H 1.09003 * 109.47195 * 188.12540 * 19 18 8 37 37 H 1.09006 * 109.47101 * 308.12082 * 19 18 8 38 38 H 1.09005 * 109.46822 * 51.70850 * 20 18 8 39 39 H 1.08999 * 109.47241 * 171.70981 * 20 18 8 40 40 H 1.08993 * 109.46969 * 291.70856 * 20 18 8 41 41 H 1.07998 * 119.98320 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 -0.0058 5 6 1.9217 3.6052 -0.0116 6 6 3.3024 3.6776 -0.0110 7 6 3.9851 5.0211 -0.0167 8 7 4.3434 5.3825 -1.3947 9 6 5.3729 6.4302 -1.4135 10 6 6.0059 6.4881 -2.7798 11 1 5.7027 5.7893 -3.5454 12 6 6.9720 7.4333 -3.0525 13 7 7.3414 8.2840 -2.1201 14 14 7.7562 7.5055 -4.7464 15 1 7.1701 6.4480 -5.6087 16 1 7.5012 8.8365 -5.3537 17 1 9.2203 7.2897 -4.6237 18 6 3.1571 5.7964 -2.1558 19 6 2.6699 7.1531 -1.6431 20 6 3.5168 5.9108 -3.6386 21 6 4.0580 2.5198 -0.0057 22 6 3.4333 1.2855 0.0001 23 9 4.1713 0.1539 0.0058 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2138 2.3200 -0.0061 28 1 1.3342 4.5114 -0.0165 29 1 3.3104 5.7732 0.3925 30 1 4.8876 4.9726 0.5926 31 1 4.9159 7.3928 -1.1837 32 1 6.1358 6.2032 -0.6689 33 1 8.0213 8.9486 -2.3119 34 1 2.3676 5.0555 -2.0297 35 1 3.3994 7.9215 -1.8991 36 1 1.7120 7.3932 -2.1045 37 1 2.5512 7.1110 -0.5603 38 1 4.0002 4.9907 -3.9673 39 1 2.6099 6.0729 -4.2210 40 1 4.1967 6.7503 -3.7838 41 1 5.1363 2.5790 -0.0057 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = -46.834862 kcal Electronic energy + Delta-G solvation = -22421.816932 eV Core-core repulsion = 19024.084416 eV Total energy + Delta-G solvation = -3397.732516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.61049 -40.04650 -38.39924 -36.86427 -32.66208 -31.84713 -30.62821 -29.80314 -27.99614 -27.06329 -26.15671 -24.33732 -22.73120 -22.11733 -21.22125 -18.74185 -18.20019 -16.86669 -16.69606 -16.27631 -16.14772 -15.25387 -14.98081 -14.77465 -14.66500 -14.21093 -14.10877 -13.91596 -13.25089 -13.11821 -12.56772 -12.28474 -12.18418 -12.12556 -11.57976 -11.45096 -11.29736 -11.17045 -11.10158 -11.05153 -10.68326 -10.67502 -10.57430 -10.28219 -10.16115 -9.40587 -8.97259 -8.78765 -8.37846 -8.02943 -7.20479 -6.00956 -3.97608 1.24550 1.34593 3.08330 3.31288 3.39768 3.44110 3.64879 4.31028 4.44421 4.69358 4.84698 4.93682 4.95044 5.07755 5.22317 5.29484 5.33673 5.39052 5.61780 5.66423 5.79101 5.87598 5.97055 6.02233 6.09899 6.19538 6.28666 6.33540 6.52864 6.61386 6.71419 6.73639 6.76684 6.98765 7.23724 7.27189 7.41896 7.49151 7.86162 8.13611 8.21889 8.56705 9.07705 9.62568 11.09699 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.004203 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.077446 B = 6660.487606 C = 7042.742131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.082 3.918 4 C -0.183 4.183 5 C -0.087 4.087 6 C -0.064 4.064 7 C 0.087 3.913 8 N -0.525 5.525 9 C 0.185 3.815 10 C -0.501 4.501 11 H 0.076 0.924 12 C 0.052 3.948 13 N -0.900 5.900 14 Si 0.891 3.109 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.090 3.910 19 C -0.183 4.183 20 C -0.146 4.146 21 C -0.093 4.093 22 C 0.067 3.933 23 F -0.137 7.137 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.007 0.993 32 H 0.024 0.976 33 H 0.259 0.741 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.026 0.974 40 H 0.096 0.904 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.165 -10.327 5.185 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.036 3.964 4 C -0.202 4.202 5 C -0.106 4.106 6 C -0.065 4.065 7 C -0.041 4.041 8 N -0.249 5.249 9 C 0.060 3.940 10 C -0.539 4.539 11 H 0.094 0.906 12 C -0.148 4.148 13 N -0.540 5.540 14 Si 0.719 3.281 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.019 4.019 19 C -0.242 4.242 20 C -0.203 4.203 21 C -0.112 4.112 22 C 0.047 3.953 23 F -0.115 7.115 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.024 0.976 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.114 0.886 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.719 -10.825 4.980 18.171 hybrid contribution 0.012 0.785 -0.480 0.920 sum -13.707 -10.039 4.500 17.576 Atomic orbital electron populations 1.23051 0.78401 1.03855 1.01375 1.86108 1.21342 1.26161 1.89172 1.18935 0.90778 0.85373 1.01324 1.21016 0.99818 0.91501 1.07834 1.20933 0.94193 0.96975 0.98500 1.19783 0.92809 0.95469 0.98413 1.21055 0.98973 0.91031 0.93069 1.62385 1.09769 1.43848 1.08929 1.19892 0.88408 0.87659 0.98013 1.21487 1.19572 1.15188 0.97666 0.90611 1.24981 0.96869 0.95979 0.97006 1.69966 1.31597 1.19527 1.32943 0.86547 0.79259 0.77763 0.84543 1.19576 1.21243 1.21138 1.21448 0.91761 0.93458 0.95209 1.22461 1.00977 1.00811 0.99964 1.22249 1.00013 1.04447 0.93551 1.20949 1.01460 0.89335 0.99453 1.16985 0.85802 0.82983 1.09506 1.91475 1.76519 1.49146 1.94397 0.88295 0.92655 0.92566 0.84958 0.85453 0.94154 0.90260 0.97572 0.95784 0.93128 0.92422 0.90837 0.93659 0.93721 0.92790 0.95467 0.88557 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.09 10.36 -19.60 -0.20 -4.29 16 3 C 0.08 1.14 6.69 -39.18 -0.26 0.88 16 4 C -0.18 -2.21 9.04 -39.45 -0.36 -2.56 16 5 C -0.09 -1.14 8.38 -39.59 -0.33 -1.47 16 6 C -0.06 -0.96 4.99 -104.61 -0.52 -1.48 16 7 C 0.09 1.46 5.02 -4.98 -0.03 1.44 16 8 N -0.53 -10.58 4.42 -229.52 -1.01 -11.60 16 9 C 0.18 4.50 4.48 -4.98 -0.02 4.48 16 10 C -0.50 -13.22 6.68 -34.44 -0.23 -13.45 16 11 H 0.08 1.99 5.36 -52.48 -0.28 1.71 16 12 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 13 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 14 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.09 1.65 2.83 -67.71 -0.19 1.46 16 19 C -0.18 -3.17 8.32 37.16 0.31 -2.86 16 20 C -0.15 -2.82 7.69 37.16 0.29 -2.54 16 21 C -0.09 -1.43 9.70 -39.54 -0.38 -1.82 16 22 C 0.07 1.04 7.31 -39.30 -0.29 0.75 16 23 F -0.14 -2.24 17.11 2.25 0.04 -2.20 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 26 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 27 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 28 H 0.13 1.46 8.02 -52.49 -0.42 1.04 16 29 H 0.04 0.64 6.03 -51.92 -0.31 0.33 16 30 H 0.08 1.35 7.64 -51.93 -0.40 0.95 16 31 H 0.01 0.17 5.69 -51.93 -0.30 -0.13 16 32 H 0.02 0.63 7.68 -51.93 -0.40 0.24 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.06 0.97 6.31 -51.93 -0.33 0.65 16 35 H 0.07 1.48 6.49 -51.93 -0.34 1.15 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.72 6.26 -51.93 -0.33 0.39 16 38 H 0.05 1.09 7.48 -51.93 -0.39 0.70 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 2.13 5.45 -51.93 -0.28 1.85 16 41 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -29.44 327.24 -7.37 -36.81 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.72 Total: 0.00 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -1.12 Total: -14.63 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.28 Total: -36.79 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.20 Total: -4.29 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.44 -7.37 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.024 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds