Wall clock time and date at job start Tue Mar 31 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35955 * 117.00202 * 2 1 4 4 C 1.38660 * 120.06337 * 359.72235 * 3 2 1 5 5 C 1.38180 * 119.96956 * 180.27641 * 4 3 2 6 6 C 1.38260 * 120.09703 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93600 * 180.02562 * 6 5 4 8 8 N 1.46891 * 109.47358 * 263.69391 * 7 6 5 9 9 C 1.46901 * 111.00349 * 198.66300 * 8 7 6 10 10 C 1.50694 * 109.47658 * 163.28303 * 9 8 7 11 11 H 1.08003 * 119.99613 * 357.68866 * 10 9 8 12 12 C 1.37878 * 120.00285 * 177.67997 * 10 9 8 13 13 N 1.31517 * 119.99894 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99977 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47173 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47263 * 120.00385 * 14 12 10 17 17 H 1.48506 * 109.47201 * 240.00277 * 14 12 10 18 18 C 1.46897 * 111.00152 * 74.70872 * 8 7 6 19 19 C 1.53000 * 109.47281 * 70.52987 * 18 8 7 20 20 C 1.53007 * 109.47434 * 190.52905 * 18 8 7 21 21 C 1.38253 * 120.12550 * 0.04802 * 6 5 4 22 22 C 1.38335 * 120.03200 * 359.95136 * 21 6 5 23 23 F 1.35098 * 120.04866 * 180.02562 * 22 21 6 24 24 H 1.09005 * 109.47359 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47333 * 300.00139 * 1 2 3 26 26 H 1.08994 * 109.47007 * 59.99821 * 1 2 3 27 27 H 1.07995 * 120.01080 * 0.25804 * 4 3 2 28 28 H 1.08000 * 119.94750 * 179.97438 * 5 4 3 29 29 H 1.09007 * 109.46844 * 23.69875 * 7 6 5 30 30 H 1.09005 * 109.46735 * 143.69231 * 7 6 5 31 31 H 1.09003 * 109.47195 * 283.28469 * 9 8 7 32 32 H 1.09000 * 109.46643 * 43.28324 * 9 8 7 33 33 H 0.96993 * 119.99592 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.47672 * 310.52919 * 18 8 7 35 35 H 1.08999 * 109.47137 * 68.12153 * 19 18 8 36 36 H 1.09003 * 109.47195 * 188.12540 * 19 18 8 37 37 H 1.09006 * 109.47101 * 308.12082 * 19 18 8 38 38 H 1.09005 * 109.46822 * 51.70850 * 20 18 8 39 39 H 1.08999 * 109.47241 * 171.70981 * 20 18 8 40 40 H 1.08993 * 109.46969 * 291.70856 * 20 18 8 41 41 H 1.07998 * 119.98320 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 -0.0058 5 6 1.9217 3.6052 -0.0116 6 6 3.3024 3.6776 -0.0110 7 6 3.9851 5.0211 -0.0167 8 7 4.3434 5.3825 -1.3947 9 6 5.3729 6.4302 -1.4135 10 6 6.0059 6.4881 -2.7798 11 1 5.7027 5.7893 -3.5454 12 6 6.9720 7.4333 -3.0525 13 7 7.3414 8.2840 -2.1201 14 14 7.7562 7.5055 -4.7464 15 1 7.1701 6.4480 -5.6087 16 1 7.5012 8.8365 -5.3537 17 1 9.2203 7.2897 -4.6237 18 6 3.1571 5.7964 -2.1558 19 6 2.6699 7.1531 -1.6431 20 6 3.5168 5.9108 -3.6386 21 6 4.0580 2.5198 -0.0057 22 6 3.4333 1.2855 0.0001 23 9 4.1713 0.1539 0.0058 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2138 2.3200 -0.0061 28 1 1.3342 4.5114 -0.0165 29 1 3.3104 5.7732 0.3925 30 1 4.8876 4.9726 0.5926 31 1 4.9159 7.3928 -1.1837 32 1 6.1358 6.2032 -0.6689 33 1 8.0213 8.9486 -2.3119 34 1 2.3676 5.0555 -2.0297 35 1 3.3994 7.9215 -1.8991 36 1 1.7120 7.3932 -2.1045 37 1 2.5512 7.1110 -0.5603 38 1 4.0002 4.9907 -3.9673 39 1 2.6099 6.0729 -4.2210 40 1 4.1967 6.7503 -3.7838 41 1 5.1363 2.5790 -0.0057 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:02 Heat of formation + Delta-G solvation = -64.459073 kcal Electronic energy + Delta-G solvation = -22422.581175 eV Core-core repulsion = 19024.084416 eV Total energy + Delta-G solvation = -3398.496759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.80983 -41.07832 -39.71163 -38.10922 -34.67471 -33.17787 -31.69389 -31.24659 -29.36833 -28.21570 -27.67941 -25.72846 -24.11012 -23.64822 -22.38598 -20.24368 -19.21295 -18.50958 -17.86533 -17.70496 -17.14940 -16.77497 -16.52005 -16.01592 -15.78364 -15.65069 -15.27466 -15.11674 -14.78002 -14.42271 -14.11936 -13.75953 -13.34576 -13.14517 -13.07682 -13.01760 -12.76891 -12.58806 -12.56231 -12.37918 -12.27980 -12.07017 -11.94658 -11.86962 -11.71222 -11.17451 -10.85942 -10.46322 -9.87977 -9.12776 -8.81909 -8.10305 -6.12601 0.16405 0.25772 1.41220 1.43967 1.55340 2.23283 2.44006 2.56112 3.21997 3.24447 3.49431 3.71359 3.85100 4.11515 4.21648 4.29594 4.39245 4.42085 4.43362 4.50359 4.55139 4.60467 4.75347 4.77513 4.92737 4.95181 5.04484 5.08927 5.11839 5.20403 5.21342 5.31015 5.38262 5.59067 5.65222 5.68357 5.80209 5.83137 6.20540 6.33615 6.52025 6.76606 7.00258 7.51424 9.00142 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.004203 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.077446 B = 6660.487606 C = 7042.742131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.085 3.915 4 C -0.170 4.170 5 C -0.078 4.078 6 C -0.077 4.077 7 C 0.091 3.909 8 N -0.536 5.536 9 C 0.200 3.800 10 C -0.501 4.501 11 H 0.075 0.925 12 C 0.000 4.000 13 N -0.937 5.937 14 Si 0.952 3.048 15 H -0.264 1.264 16 H -0.282 1.282 17 H -0.286 1.286 18 C 0.088 3.912 19 C -0.174 4.174 20 C -0.141 4.141 21 C -0.103 4.103 22 C 0.039 3.961 23 F -0.150 7.150 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.171 0.829 28 H 0.153 0.847 29 H 0.055 0.945 30 H 0.065 0.935 31 H -0.010 1.010 32 H -0.007 1.007 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.301 -11.087 4.664 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.039 3.961 4 C -0.188 4.188 5 C -0.096 4.096 6 C -0.078 4.078 7 C -0.037 4.037 8 N -0.260 5.260 9 C 0.074 3.926 10 C -0.539 4.539 11 H 0.093 0.907 12 C -0.197 4.197 13 N -0.579 5.579 14 Si 0.778 3.222 15 H -0.188 1.188 16 H -0.208 1.208 17 H -0.212 1.212 18 C -0.020 4.020 19 C -0.233 4.233 20 C -0.199 4.199 21 C -0.123 4.123 22 C 0.020 3.980 23 F -0.129 7.129 24 H 0.137 0.863 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.189 0.811 28 H 0.170 0.830 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.007 0.993 32 H 0.012 0.988 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.880 -11.606 4.457 20.965 hybrid contribution 0.857 0.921 -0.278 1.288 sum -16.023 -10.686 4.179 19.708 Atomic orbital electron populations 1.23440 0.75663 1.05847 1.02834 1.86098 1.24184 1.25836 1.88834 1.19077 0.90268 0.86598 1.00184 1.21364 1.01520 0.90088 1.05850 1.21185 0.93118 0.98472 0.96841 1.19595 0.93895 0.93865 1.00469 1.21007 0.99037 0.92605 0.91044 1.62264 1.10263 1.42103 1.11353 1.19524 0.88826 0.88102 0.96100 1.21787 1.19141 1.14557 0.98441 0.90684 1.25743 0.97655 0.95893 1.00388 1.70085 1.32511 1.20462 1.34877 0.85581 0.78088 0.77945 0.80555 1.18774 1.20763 1.21186 1.21552 0.91466 0.94799 0.94182 1.22342 1.01199 0.98825 1.00910 1.22125 1.00572 1.02192 0.94983 1.20892 1.01104 0.89986 1.00277 1.17207 0.86914 0.82518 1.11379 1.91430 1.77029 1.49696 1.94696 0.86334 0.90895 0.91203 0.81141 0.82973 0.92677 0.91635 0.99270 0.98847 0.93198 0.89745 0.94525 0.90734 0.92591 0.94160 0.92424 0.91834 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.92 10.36 -93.04 -0.96 -8.88 16 3 C 0.09 2.19 6.69 22.53 0.15 2.34 16 4 C -0.17 -3.41 9.04 22.36 0.20 -3.21 16 5 C -0.08 -1.75 8.38 22.26 0.19 -1.56 16 6 C -0.08 -2.24 4.99 -19.86 -0.10 -2.34 16 7 C 0.09 3.03 5.02 85.56 0.43 3.46 16 8 N -0.54 -21.64 4.42 -880.07 -3.89 -25.53 16 9 C 0.20 10.10 4.48 85.55 0.38 10.48 16 10 C -0.50 -27.12 6.68 25.60 0.17 -26.95 16 11 H 0.08 4.01 5.36 -2.91 -0.02 3.99 16 12 C 0.00 0.01 5.46 84.65 0.46 0.47 16 13 N -0.94 -55.63 13.29 21.45 0.28 -55.35 16 14 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 18 C 0.09 3.08 2.83 44.92 0.13 3.21 16 19 C -0.17 -5.70 8.32 71.98 0.60 -5.10 16 20 C -0.14 -5.32 7.69 71.98 0.55 -4.76 16 21 C -0.10 -3.23 9.70 22.30 0.22 -3.01 16 22 C 0.04 1.21 7.31 22.45 0.16 1.38 16 23 F -0.15 -5.01 17.11 44.97 0.77 -4.24 16 24 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.07 0.65 7.67 -2.38 -0.02 0.63 16 26 H 0.07 0.68 7.65 -2.39 -0.02 0.66 16 27 H 0.17 2.10 6.30 -2.91 -0.02 2.08 16 28 H 0.15 2.70 8.02 -2.91 -0.02 2.67 16 29 H 0.06 1.67 6.03 -2.38 -0.01 1.66 16 30 H 0.07 2.33 7.64 -2.38 -0.02 2.31 16 31 H -0.01 -0.55 5.69 -2.39 -0.01 -0.57 16 32 H -0.01 -0.37 7.68 -2.39 -0.02 -0.38 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.08 2.54 6.31 -2.39 -0.02 2.52 16 35 H 0.04 1.47 6.49 -2.39 -0.02 1.45 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.68 6.26 -2.38 -0.01 1.67 16 38 H 0.04 1.59 7.48 -2.38 -0.02 1.57 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 2.81 5.45 -2.39 -0.01 2.80 16 41 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -65.79 327.24 3.92 -61.87 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.03 Total: 10.19 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 4.66 Total: -24.28 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.60 Total: -80.87 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.96 Total: -8.88 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.77 Total: -4.24 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.79 3.92 -61.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.586 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds