Wall clock time and date at job start Tue Mar 31 2020 05:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47027 * 2 1 4 4 C 1.33389 * 125.20991 * 89.99803 * 3 2 1 5 5 C 1.38419 * 114.92382 * 179.79276 * 4 3 2 6 6 C 1.33387 * 114.92437 * 0.43000 * 5 4 3 7 7 C 1.50700 * 125.20783 * 179.85850 * 6 5 4 8 8 N 1.46897 * 109.46881 * 91.77732 * 7 6 5 9 9 C 1.46904 * 110.99927 * 195.23855 * 8 7 6 10 10 C 1.50697 * 109.47146 * 156.58691 * 9 8 7 11 11 H 1.07997 * 120.00376 * 354.06332 * 10 9 8 12 12 C 1.37876 * 119.99700 * 174.06478 * 10 9 8 13 13 N 1.31510 * 120.00204 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99934 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47153 * 59.99788 * 14 12 10 16 16 H 1.48493 * 109.47313 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46871 * 300.00013 * 14 12 10 18 18 C 1.46897 * 111.00141 * 71.28399 * 8 7 6 19 19 C 1.53003 * 109.47236 * 201.20975 * 18 8 7 20 20 C 1.52998 * 109.47342 * 59.74766 * 19 18 8 21 21 C 1.52999 * 109.47554 * 179.75263 * 19 18 8 22 22 S 1.75888 * 109.58938 * 359.59361 * 6 5 4 23 23 H 1.08993 * 109.47267 * 60.00616 * 1 2 3 24 24 H 1.09008 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47745 * 299.99959 * 1 2 3 26 26 H 1.08993 * 109.47210 * 239.99575 * 2 1 3 27 27 H 1.09001 * 109.46980 * 119.99313 * 2 1 3 28 28 H 1.07999 * 122.53536 * 0.02562 * 4 3 2 29 29 H 1.08004 * 122.53919 * 180.27293 * 5 4 3 30 30 H 1.08999 * 109.46845 * 331.77726 * 7 6 5 31 31 H 1.08991 * 109.47158 * 211.77487 * 7 6 5 32 32 H 1.08999 * 109.46682 * 276.58330 * 9 8 7 33 33 H 1.08992 * 109.47218 * 36.58315 * 9 8 7 34 34 H 0.97001 * 119.99979 * 180.02562 * 13 12 10 35 35 H 1.09007 * 109.47165 * 321.20307 * 18 8 7 36 36 H 1.08992 * 109.47371 * 81.20525 * 18 8 7 37 37 H 1.09004 * 109.47078 * 299.75352 * 19 18 8 38 38 H 1.08997 * 109.47104 * 185.77423 * 20 19 18 39 39 H 1.08997 * 109.47459 * 305.77680 * 20 19 18 40 40 H 1.09000 * 109.47148 * 65.77617 * 20 19 18 41 41 H 1.09004 * 109.46843 * 59.99648 * 21 19 18 42 42 H 1.08990 * 109.47206 * 179.97438 * 21 19 18 43 43 H 1.09004 * 109.47001 * 300.00136 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1459 1.0898 5 6 2.7468 3.4284 0.8427 6 6 2.8541 3.7480 -0.4479 7 6 3.3246 5.0782 -0.9773 8 7 4.7765 5.0323 -1.1960 9 6 5.3271 6.3843 -1.3605 10 6 6.7931 6.3756 -1.0115 11 1 7.2468 5.4826 -0.6076 12 6 7.5552 7.5077 -1.2077 13 7 7.0029 8.5950 -1.6999 14 14 9.3722 7.4972 -0.7743 15 1 10.0657 6.4550 -1.5733 16 1 9.9612 8.8262 -1.0776 17 1 9.5344 7.2017 0.6719 18 6 5.1088 4.1847 -2.3488 19 6 6.5654 3.7285 -2.2435 20 6 6.7595 2.9366 -0.9489 21 6 6.9097 2.8406 -3.4410 22 16 2.3697 2.3769 -1.4373 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.1526 1.7601 2.0894 29 1 2.9961 4.1190 1.6348 30 1 3.0905 5.8601 -0.2549 31 1 2.8218 5.2923 -1.9203 32 1 5.2019 6.7041 -2.3950 33 1 4.8006 7.0738 -0.7008 34 1 7.5391 9.3914 -1.8383 35 1 4.4549 3.3126 -2.3591 36 1 4.9715 4.7526 -3.2689 37 1 7.2197 4.6003 -2.2376 38 1 7.8159 2.6997 -0.8228 39 1 6.4175 3.5331 -0.1032 40 1 6.1834 2.0126 -0.9983 41 1 6.7715 3.4049 -4.3633 42 1 7.9475 2.5160 -3.3661 43 1 6.2555 1.9688 -3.4469 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043419651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:43 Heat of formation + Delta-G solvation = 14.324820 kcal Electronic energy + Delta-G solvation = -20404.774001 eV Core-core repulsion = 17575.906744 eV Total energy + Delta-G solvation = -2828.867257 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.21187 -37.17820 -34.24932 -33.36139 -32.45611 -29.43057 -27.08782 -26.40527 -25.95371 -24.36623 -22.77736 -21.96582 -20.79085 -19.20626 -18.30635 -16.76870 -16.23473 -15.20361 -15.13142 -14.58777 -14.27974 -14.04035 -13.90820 -13.72573 -13.08640 -12.91518 -12.50758 -12.28027 -12.19525 -11.93739 -11.80795 -11.71198 -11.62967 -11.23354 -11.19477 -11.03318 -10.91511 -10.62352 -10.55992 -10.36041 -10.17957 -10.06778 -9.89474 -9.41584 -9.13961 -8.38878 -8.19431 -8.11046 -7.24955 -5.99899 -3.98813 1.26536 1.86150 2.27158 3.03741 3.34713 3.38951 3.42085 4.44254 4.74949 4.95692 5.01512 5.18223 5.22176 5.33897 5.43986 5.60667 5.67448 5.70653 5.72361 5.79684 5.86222 5.97274 5.99988 6.05023 6.11419 6.16772 6.31451 6.34823 6.45215 6.48675 6.58015 6.63901 6.73199 6.83592 6.85711 7.18298 7.26559 7.33584 7.44309 7.88074 8.12319 8.20160 8.55194 9.08398 9.63157 11.10336 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025429 B = 0.004540 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.860069 B = 6166.466863 C = 6535.386480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C -0.192 4.192 4 C -0.130 4.130 5 C -0.133 4.133 6 C -0.139 4.139 7 C 0.120 3.880 8 N -0.526 5.526 9 C 0.192 3.808 10 C -0.499 4.499 11 H 0.074 0.926 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.071 3.929 19 C -0.101 4.101 20 C -0.128 4.128 21 C -0.144 4.144 22 S 0.081 5.919 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.032 0.968 32 H -0.001 1.001 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.108 0.892 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.179 -14.569 1.604 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.309 4.309 4 C -0.161 4.161 5 C -0.163 4.163 6 C -0.257 4.257 7 C -0.011 4.011 8 N -0.250 5.250 9 C 0.067 3.933 10 C -0.538 4.538 11 H 0.092 0.908 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.202 1.202 18 C -0.057 4.057 19 C -0.120 4.120 20 C -0.185 4.185 21 C -0.202 4.202 22 S 0.345 5.655 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.017 0.983 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.126 0.874 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.016 -14.825 0.413 17.896 hybrid contribution 0.778 0.787 0.979 1.478 sum -9.238 -14.038 1.391 16.862 Atomic orbital electron populations 1.21782 0.94726 1.01528 1.02392 1.20018 0.95814 0.90240 1.02778 1.24379 1.09851 1.00597 0.96050 1.20002 1.03024 0.94357 0.98734 1.20012 1.03225 0.96900 0.96168 1.24535 1.05537 0.99519 0.96078 1.20597 0.90755 0.90709 0.98991 1.62116 1.07051 1.15864 1.40016 1.19842 0.95521 0.82249 0.95664 1.21265 0.93368 0.98041 1.41106 0.90809 1.24990 0.98496 0.95589 0.95610 1.69946 1.36187 1.02402 1.45504 0.86647 0.85302 0.76991 0.79045 1.20202 1.21504 1.20190 1.22089 0.96685 0.95721 0.91228 1.21347 0.97396 0.99637 0.93613 1.21622 0.98951 0.98689 0.99237 1.21838 1.00398 0.99252 0.98686 1.84137 1.64966 1.06225 1.10182 0.92550 0.92417 0.92406 0.91182 0.90440 0.85075 0.84436 0.89380 0.95005 0.98278 0.95925 0.92985 0.92864 0.95914 0.87369 0.94708 0.90756 0.94920 0.93463 0.93324 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.05 -0.48 6.43 -27.89 -0.18 -0.66 16 3 C -0.19 -2.45 5.76 -36.01 -0.21 -2.65 16 4 C -0.13 -1.72 10.05 -41.21 -0.41 -2.14 16 5 C -0.13 -2.00 10.05 -41.21 -0.41 -2.42 16 6 C -0.14 -2.24 5.52 -36.00 -0.20 -2.44 16 7 C 0.12 2.16 5.44 -4.98 -0.03 2.13 16 8 N -0.53 -10.99 3.48 -237.53 -0.83 -11.81 16 9 C 0.19 4.82 4.79 -4.98 -0.02 4.79 16 10 C -0.50 -13.39 7.10 -34.44 -0.24 -13.63 16 11 H 0.07 1.95 5.42 -52.49 -0.28 1.67 16 12 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 13 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.07 1.40 4.28 -3.82 -0.02 1.38 16 19 C -0.10 -1.97 2.43 -90.62 -0.22 -2.19 16 20 C -0.13 -2.37 8.52 37.16 0.32 -2.05 16 21 C -0.14 -2.35 9.19 37.16 0.34 -2.01 16 22 S 0.08 1.16 21.41 -107.50 -2.30 -1.14 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 30 H 0.09 1.57 7.67 -51.93 -0.40 1.18 16 31 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 32 H 0.00 -0.02 7.64 -51.93 -0.40 -0.41 16 33 H 0.02 0.60 7.58 -51.93 -0.39 0.21 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.05 0.96 5.35 -51.93 -0.28 0.68 16 36 H 0.02 0.47 7.66 -51.93 -0.40 0.07 16 37 H 0.11 2.47 5.27 -51.93 -0.27 2.19 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.53 6.90 -51.93 -0.36 1.17 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -28.25 351.35 -10.54 -38.79 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.41 Total: -0.59 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -1.02 Total: -21.35 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.09 Total: -37.38 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.30 Total: -1.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.25 -10.54 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.115 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds