Wall clock time and date at job start Tue Mar 31 2020 05:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47027 * 2 1 4 4 C 1.33389 * 125.20991 * 89.99803 * 3 2 1 5 5 C 1.38419 * 114.92382 * 179.79276 * 4 3 2 6 6 C 1.33387 * 114.92437 * 0.43000 * 5 4 3 7 7 C 1.50700 * 125.20783 * 179.85850 * 6 5 4 8 8 N 1.46897 * 109.46881 * 91.77732 * 7 6 5 9 9 C 1.46904 * 110.99927 * 195.23855 * 8 7 6 10 10 C 1.50697 * 109.47146 * 156.58691 * 9 8 7 11 11 H 1.07997 * 120.00376 * 354.06332 * 10 9 8 12 12 C 1.37876 * 119.99700 * 174.06478 * 10 9 8 13 13 N 1.31510 * 120.00204 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99934 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47153 * 59.99788 * 14 12 10 16 16 H 1.48493 * 109.47313 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46871 * 300.00013 * 14 12 10 18 18 C 1.46897 * 111.00141 * 71.28399 * 8 7 6 19 19 C 1.53003 * 109.47236 * 201.20975 * 18 8 7 20 20 C 1.52998 * 109.47342 * 59.74766 * 19 18 8 21 21 C 1.52999 * 109.47554 * 179.75263 * 19 18 8 22 22 S 1.75888 * 109.58938 * 359.59361 * 6 5 4 23 23 H 1.08993 * 109.47267 * 60.00616 * 1 2 3 24 24 H 1.09008 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47745 * 299.99959 * 1 2 3 26 26 H 1.08993 * 109.47210 * 239.99575 * 2 1 3 27 27 H 1.09001 * 109.46980 * 119.99313 * 2 1 3 28 28 H 1.07999 * 122.53536 * 0.02562 * 4 3 2 29 29 H 1.08004 * 122.53919 * 180.27293 * 5 4 3 30 30 H 1.08999 * 109.46845 * 331.77726 * 7 6 5 31 31 H 1.08991 * 109.47158 * 211.77487 * 7 6 5 32 32 H 1.08999 * 109.46682 * 276.58330 * 9 8 7 33 33 H 1.08992 * 109.47218 * 36.58315 * 9 8 7 34 34 H 0.97001 * 119.99979 * 180.02562 * 13 12 10 35 35 H 1.09007 * 109.47165 * 321.20307 * 18 8 7 36 36 H 1.08992 * 109.47371 * 81.20525 * 18 8 7 37 37 H 1.09004 * 109.47078 * 299.75352 * 19 18 8 38 38 H 1.08997 * 109.47104 * 185.77423 * 20 19 18 39 39 H 1.08997 * 109.47459 * 305.77680 * 20 19 18 40 40 H 1.09000 * 109.47148 * 65.77617 * 20 19 18 41 41 H 1.09004 * 109.46843 * 59.99648 * 21 19 18 42 42 H 1.08990 * 109.47206 * 179.97438 * 21 19 18 43 43 H 1.09004 * 109.47001 * 300.00136 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1459 1.0898 5 6 2.7468 3.4284 0.8427 6 6 2.8541 3.7480 -0.4479 7 6 3.3246 5.0782 -0.9773 8 7 4.7765 5.0323 -1.1960 9 6 5.3271 6.3843 -1.3605 10 6 6.7931 6.3756 -1.0115 11 1 7.2468 5.4826 -0.6076 12 6 7.5552 7.5077 -1.2077 13 7 7.0029 8.5950 -1.6999 14 14 9.3722 7.4972 -0.7743 15 1 10.0657 6.4550 -1.5733 16 1 9.9612 8.8262 -1.0776 17 1 9.5344 7.2017 0.6719 18 6 5.1088 4.1847 -2.3488 19 6 6.5654 3.7285 -2.2435 20 6 6.7595 2.9366 -0.9489 21 6 6.9097 2.8406 -3.4410 22 16 2.3697 2.3769 -1.4373 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.1526 1.7601 2.0894 29 1 2.9961 4.1190 1.6348 30 1 3.0905 5.8601 -0.2549 31 1 2.8218 5.2923 -1.9203 32 1 5.2019 6.7041 -2.3950 33 1 4.8006 7.0738 -0.7008 34 1 7.5391 9.3914 -1.8383 35 1 4.4549 3.3126 -2.3591 36 1 4.9715 4.7526 -3.2689 37 1 7.2197 4.6003 -2.2376 38 1 7.8159 2.6997 -0.8228 39 1 6.4175 3.5331 -0.1032 40 1 6.1834 2.0126 -0.9983 41 1 6.7715 3.4049 -4.3633 42 1 7.9475 2.5160 -3.3661 43 1 6.2555 1.9688 -3.4469 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:43 Heat of formation + Delta-G solvation = 0.949705 kcal Electronic energy + Delta-G solvation = -20405.353990 eV Core-core repulsion = 17575.906744 eV Total energy + Delta-G solvation = -2829.447245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.59687 -38.53190 -35.52296 -34.93313 -34.12621 -30.83086 -28.87390 -27.82272 -27.23447 -25.88561 -24.16642 -22.99405 -22.45976 -20.73504 -19.54099 -18.42708 -17.71216 -16.88406 -16.56436 -16.18173 -15.69146 -15.34884 -15.10179 -14.88463 -14.49534 -14.15698 -13.99368 -13.91658 -13.58658 -13.31717 -13.17542 -12.95096 -12.75971 -12.75301 -12.64338 -12.48719 -12.33755 -12.17060 -11.94784 -11.78802 -11.65291 -11.50352 -11.43708 -11.28953 -10.98326 -10.50126 -9.35203 -9.26537 -8.99464 -8.13054 -6.18733 0.13541 0.73947 1.14375 1.42500 1.44480 1.51837 1.91297 2.43651 3.18475 3.37603 3.85682 3.93720 4.11788 4.20564 4.25206 4.36927 4.47795 4.50227 4.57163 4.63862 4.70890 4.75601 4.80880 4.92202 4.93331 5.04067 5.04814 5.11002 5.12189 5.14236 5.21356 5.28778 5.38057 5.38118 5.42616 5.51144 5.67268 5.72290 5.78203 5.84521 6.13850 6.39114 6.62169 6.95170 7.47447 8.97037 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025429 B = 0.004540 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.860069 B = 6166.466863 C = 6535.386480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.174 4.174 4 C -0.142 4.142 5 C -0.128 4.128 6 C -0.171 4.171 7 C 0.122 3.878 8 N -0.526 5.526 9 C 0.207 3.793 10 C -0.501 4.501 11 H 0.077 0.923 12 C 0.001 3.999 13 N -0.939 5.939 14 Si 0.956 3.044 15 H -0.267 1.267 16 H -0.288 1.288 17 H -0.269 1.269 18 C 0.074 3.926 19 C -0.104 4.104 20 C -0.118 4.118 21 C -0.137 4.137 22 S 0.078 5.922 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.157 0.843 29 H 0.137 0.863 30 H 0.081 0.919 31 H 0.030 0.970 32 H -0.033 1.033 33 H 0.000 1.000 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.004 0.996 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 -17.655 2.363 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.291 4.291 4 C -0.172 4.172 5 C -0.158 4.158 6 C -0.288 4.288 7 C -0.008 4.008 8 N -0.249 5.249 9 C 0.081 3.919 10 C -0.539 4.539 11 H 0.095 0.905 12 C -0.196 4.196 13 N -0.580 5.580 14 Si 0.782 3.218 15 H -0.192 1.192 16 H -0.214 1.214 17 H -0.194 1.194 18 C -0.054 4.054 19 C -0.122 4.122 20 C -0.175 4.175 21 C -0.195 4.195 22 S 0.342 5.658 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.175 0.825 29 H 0.155 0.845 30 H 0.099 0.901 31 H 0.048 0.952 32 H -0.016 1.016 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.022 0.978 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.986 -17.932 1.175 20.559 hybrid contribution 0.650 1.667 0.764 1.946 sum -9.336 -16.265 1.938 18.854 Atomic orbital electron populations 1.21768 0.93643 1.02786 1.01990 1.20189 0.96642 0.88191 1.04013 1.24834 1.07892 1.01604 0.94790 1.20194 1.03305 0.93516 1.00187 1.20227 1.02082 0.97830 0.95709 1.24244 1.08193 0.99389 0.97016 1.20514 0.88971 0.92448 0.98853 1.62070 1.09027 1.13354 1.40485 1.19503 0.95216 0.84213 0.92951 1.21543 0.94108 0.98018 1.40247 0.90476 1.25817 1.02944 0.95234 0.95641 1.70083 1.37843 1.03081 1.47020 0.85623 0.80038 0.77089 0.79072 1.19222 1.21380 1.19409 1.22121 0.97680 0.95802 0.89812 1.21288 0.96090 0.99067 0.95790 1.21499 0.99819 0.98650 0.97523 1.21767 1.01635 0.99181 0.96929 1.84076 1.65106 1.05677 1.10950 0.93372 0.90386 0.92436 0.90501 0.88612 0.82543 0.84542 0.90099 0.95208 1.01570 0.98167 0.93054 0.90740 0.97754 0.91139 0.93645 0.93231 0.93221 0.93623 0.92043 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 71.98 0.71 -1.27 16 2 C -0.05 -0.82 6.43 29.85 0.19 -0.62 16 3 C -0.17 -3.96 5.76 24.59 0.14 -3.82 16 4 C -0.14 -3.40 10.05 21.22 0.21 -3.19 16 5 C -0.13 -3.72 10.05 21.21 0.21 -3.50 16 6 C -0.17 -5.47 5.52 24.59 0.14 -5.33 16 7 C 0.12 4.56 5.44 85.56 0.47 5.03 16 8 N -0.53 -22.69 3.48 -905.40 -3.15 -25.84 16 9 C 0.21 10.96 4.79 85.56 0.41 11.37 16 10 C -0.50 -27.67 7.10 25.60 0.18 -27.48 16 11 H 0.08 4.15 5.42 -2.91 -0.02 4.13 16 12 C 0.00 0.05 5.46 84.66 0.46 0.51 16 13 N -0.94 -56.64 13.29 21.45 0.28 -56.36 16 14 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 C 0.07 2.95 4.28 86.30 0.37 3.32 16 19 C -0.10 -3.97 2.43 -10.79 -0.03 -4.00 16 20 C -0.12 -4.19 8.52 71.98 0.61 -3.57 16 21 C -0.14 -4.23 9.19 71.98 0.66 -3.57 16 22 S 0.08 2.11 21.41 -56.49 -1.21 0.90 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 29 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.08 3.06 7.67 -2.39 -0.02 3.04 16 31 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 32 H -0.03 -1.96 7.64 -2.39 -0.02 -1.98 16 33 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.07 2.63 5.35 -2.38 -0.01 2.62 16 36 H 0.00 0.18 7.66 -2.39 -0.02 0.16 16 37 H 0.07 3.26 5.27 -2.38 -0.01 3.25 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 2.00 6.90 -2.39 -0.02 1.98 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -62.10 351.35 3.65 -58.44 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.96 Total: 12.59 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 4.75 Total: -36.15 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -2.87 Total: -82.20 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.21 Total: 0.90 kcal Total: -62.10 3.65 -58.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.394 kcal (2) G-P(sol) polarization free energy of solvation -62.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds