Wall clock time and date at job start Tue Mar 31 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 111.00167 * 2 1 4 4 C 1.52995 * 109.47183 * 293.95623 * 3 2 1 5 5 C 1.50693 * 109.47179 * 179.97438 * 4 3 2 6 6 H 1.08008 * 119.99890 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00105 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00297 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99883 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46961 * 60.00302 * 9 7 5 11 11 H 1.48500 * 109.46950 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47359 * 300.00415 * 9 7 5 13 13 C 1.46900 * 110.99839 * 123.95822 * 2 1 3 14 14 C 1.52997 * 109.47077 * 66.04433 * 13 2 1 15 15 C 1.53008 * 109.46999 * 179.97438 * 14 13 2 16 16 O 1.42895 * 109.47006 * 179.97438 * 15 14 13 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 1.09005 * 109.46969 * 296.04615 * 1 2 3 25 25 H 1.08998 * 109.47081 * 56.04269 * 1 2 3 26 26 H 1.08994 * 109.47402 * 176.04268 * 1 2 3 27 27 H 1.09001 * 109.46730 * 53.95665 * 3 2 1 28 28 H 1.08994 * 109.46847 * 173.95686 * 3 2 1 29 29 H 1.09001 * 109.47322 * 299.99679 * 4 3 2 30 30 H 1.09000 * 109.47420 * 59.99894 * 4 3 2 31 31 H 0.97000 * 120.00707 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.46777 * 306.04104 * 13 2 1 33 33 H 1.08995 * 109.47064 * 186.04276 * 13 2 1 34 34 H 1.08997 * 109.47586 * 60.00166 * 14 13 2 35 35 H 1.09003 * 109.47359 * 299.99305 * 14 13 2 36 36 H 1.09005 * 109.46539 * 60.00054 * 15 14 13 37 37 H 1.08995 * 109.46786 * 300.00191 * 15 14 13 38 38 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 39 39 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 40 40 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 41 41 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1710 3.4645 -1.3179 6 1 2.7192 3.8325 -0.4631 7 6 1.9659 4.2817 -2.4093 8 7 1.2989 3.8336 -3.4503 9 14 2.6341 6.0262 -2.4086 10 1 4.1112 5.9903 -2.2600 11 1 2.2809 6.6920 -3.6881 12 1 2.0410 6.7831 -1.2770 13 6 1.9954 -0.7661 1.1375 14 6 1.6314 -2.2426 0.9702 15 6 2.1802 -3.0407 2.1547 16 8 1.8397 -4.4196 1.9987 17 6 2.2560 -5.2721 2.9725 18 6 2.9720 -4.7895 4.0581 19 6 3.3989 -5.6576 5.0442 20 6 3.1028 -7.0072 4.9550 21 9 3.5156 -7.8542 5.9231 22 6 2.3837 -7.4895 3.8746 23 6 1.9600 -6.6244 2.8843 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3634 -1.0251 -0.0709 27 1 1.5612 1.9273 0.8310 28 1 3.0797 1.3443 0.1082 29 1 2.0658 1.5016 -2.1491 30 1 0.5472 2.0845 -1.4264 31 1 1.1542 4.4086 -4.2180 32 1 1.5611 -0.3873 2.0627 33 1 3.0796 -0.6613 1.1756 34 1 2.0657 -2.6214 0.0450 35 1 0.5471 -2.3475 0.9323 36 1 1.7462 -2.6620 3.0801 37 1 3.2645 -2.9357 2.1923 38 1 3.1987 -3.7361 4.1305 39 1 3.9598 -5.2828 5.8876 40 1 2.1537 -8.5425 3.8060 41 1 1.3988 -7.0007 2.0418 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045943810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:24 Heat of formation + Delta-G solvation = -66.714573 kcal Electronic energy + Delta-G solvation = -20509.290042 eV Core-core repulsion = 17110.695477 eV Total energy + Delta-G solvation = -3398.594565 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.12720 -40.41440 -37.92637 -37.20579 -33.56269 -32.38372 -31.57204 -29.83651 -29.12364 -26.73254 -25.50499 -23.83830 -22.97835 -22.15034 -20.83582 -19.92019 -18.59772 -17.66989 -16.94202 -16.59817 -16.41064 -15.82348 -15.20700 -15.05352 -14.91114 -14.54881 -14.24740 -13.98200 -13.76100 -13.63484 -13.28783 -12.92200 -12.64084 -12.24890 -12.18384 -11.79762 -11.65430 -11.29458 -11.17275 -11.08366 -11.02685 -10.88561 -10.58314 -10.49462 -9.87305 -9.58394 -9.40056 -9.15265 -8.43746 -8.34218 -7.79378 -6.00627 -4.03330 0.76606 0.85814 2.82015 3.20144 3.32315 3.36923 3.38982 3.95919 4.27545 4.34177 4.40367 4.51952 4.71367 4.72762 4.84690 4.99223 5.07635 5.15430 5.30921 5.35016 5.41287 5.50228 5.64566 5.73731 5.76148 5.77028 5.86991 5.90326 6.05921 6.16010 6.24022 6.34631 6.42672 6.50751 6.93326 7.05671 7.44568 7.52014 7.76555 7.87619 8.06410 8.41656 9.03634 9.60204 11.10645 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.051517 B = 0.002078 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.377900 B =13469.799563 C =13826.471695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.063 3.937 4 C 0.027 3.973 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.059 3.941 14 C -0.116 4.116 15 C 0.060 3.940 16 O -0.309 6.309 17 C 0.128 3.872 18 C -0.183 4.183 19 C -0.111 4.111 20 C 0.053 3.947 21 F -0.143 7.143 22 C -0.113 4.113 23 C -0.126 4.126 24 H 0.017 0.983 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.025 0.975 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -20.736 15.757 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.070 4.070 14 C -0.154 4.154 15 C -0.016 4.016 16 O -0.222 6.222 17 C 0.082 3.918 18 C -0.202 4.202 19 C -0.130 4.130 20 C 0.033 3.967 21 F -0.122 7.122 22 C -0.132 4.132 23 C -0.145 4.145 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.454 -20.956 14.999 25.811 hybrid contribution 0.280 1.416 1.058 1.790 sum 1.733 -19.540 16.057 25.350 Atomic orbital electron populations 1.22448 0.87981 1.01106 1.01051 1.62043 1.07759 1.16112 1.40674 1.22362 0.98525 0.84967 1.00529 1.19099 0.96963 0.94022 0.90899 1.21149 1.35331 0.97814 1.01946 0.92871 1.24997 0.95296 0.98484 0.95558 1.69955 1.40679 1.36520 1.06014 0.86650 0.79434 0.84648 0.77193 1.20227 1.21265 1.20317 1.21935 1.00339 0.92080 0.92660 1.21555 1.02273 0.94049 0.97478 1.22906 1.00266 0.78267 1.00130 1.86111 1.73503 1.18869 1.43754 1.19081 0.94049 0.90484 0.88221 1.21192 1.02881 1.00981 0.95096 1.20954 1.00610 0.91461 1.00008 1.17581 1.02340 0.87946 0.88812 1.91488 1.88836 1.70399 1.61480 1.20962 0.98362 1.00869 0.92975 1.20326 1.03477 0.90063 1.00626 0.96417 0.90180 0.92275 0.96178 0.92102 0.95684 0.96403 0.92914 0.95326 0.90866 0.89782 0.90724 0.91965 0.91644 0.84301 0.84489 0.84101 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.13 60.07 0.55 0.91 16 2 N -0.54 -9.55 4.76 -242.93 -1.16 -10.70 16 3 C 0.06 1.30 4.90 -3.83 -0.02 1.28 16 4 C 0.03 0.71 4.90 -27.89 -0.14 0.57 16 5 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 6 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 14 C -0.12 -1.33 5.51 -26.73 -0.15 -1.47 16 15 C 0.06 0.57 4.74 37.16 0.18 0.74 16 16 O -0.31 -3.34 10.14 -19.58 -0.20 -3.54 16 17 C 0.13 1.24 6.69 -39.23 -0.26 0.98 16 18 C -0.18 -1.57 9.04 -39.44 -0.36 -1.92 16 19 C -0.11 -0.92 10.02 -39.53 -0.40 -1.32 16 20 C 0.05 0.47 7.30 -39.42 -0.29 0.19 16 21 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 22 C -0.11 -0.90 10.02 -39.53 -0.40 -1.30 16 23 C -0.13 -1.08 9.99 -39.44 -0.39 -1.48 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 1.48 6.30 -51.93 -0.33 1.15 16 26 H 0.06 0.82 6.47 -51.93 -0.34 0.49 16 27 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 29 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.02 0.48 6.47 -51.93 -0.34 0.15 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 33 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 36 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 37 H 0.07 0.55 7.67 -51.93 -0.40 0.16 16 38 H 0.14 0.97 6.30 -52.49 -0.33 0.64 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 342.23 15.07 5.16 5.16 Total: -1.00 -30.68 342.23 -8.76 -39.43 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -6.21 Total: -3.96 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.10 Total: -15.53 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.42 Total: -36.72 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.20 Total: -3.54 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.68 -8.76 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045943810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.281 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds