Wall clock time and date at job start Tue Mar 31 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 H 1.07997 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47285 * 59.99070 * 8 6 4 10 10 H 1.48494 * 109.47400 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46709 * 299.99808 * 8 6 4 12 12 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 13 13 C 1.50697 * 109.47095 * 293.94952 * 12 2 1 14 14 C 1.38318 * 119.88228 * 269.72693 * 13 12 2 15 15 C 1.38023 * 120.12338 * 179.76707 * 14 13 12 16 16 C 1.39332 * 119.87403 * 0.51000 * 15 14 13 17 17 C 1.48393 * 120.12250 * 179.72350 * 16 15 14 18 18 C 1.39332 * 120.12233 * 179.74004 * 17 16 15 19 19 C 1.38025 * 119.87277 * 179.76590 * 18 17 16 20 20 C 1.38316 * 120.12205 * 0.51600 * 19 18 17 21 21 C 1.38318 * 120.24808 * 359.73954 * 20 19 18 22 22 C 1.38022 * 120.11688 * 0.02562 * 21 20 19 23 23 C 1.39340 * 119.76088 * 359.74519 * 16 15 14 24 24 C 1.38013 * 119.87601 * 359.97438 * 23 16 15 25 25 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 26 26 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 27 27 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 28 28 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 29 29 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 30 30 H 0.96993 * 120.00117 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.47062 * 53.95734 * 12 2 1 32 32 H 1.09003 * 109.46753 * 173.95421 * 12 2 1 33 33 H 1.08003 * 119.93792 * 0.02562 * 14 13 12 34 34 H 1.07992 * 120.05939 * 180.23402 * 15 14 13 35 35 H 1.07999 * 120.06438 * 0.03130 * 18 17 16 36 36 H 1.08000 * 119.93677 * 180.25538 * 19 18 17 37 37 H 1.08000 * 119.87898 * 179.71748 * 20 19 18 38 38 H 1.07998 * 119.94147 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.06256 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.06093 * 179.97438 * 23 16 15 41 41 H 1.08004 * 119.93958 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5818 4.1873 3.1377 9 1 2.1734 3.4304 4.2700 10 1 2.1139 5.5736 3.1378 11 1 0.1045 4.2237 3.2849 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4990 -3.0711 -0.3047 15 6 2.1735 -4.4031 -0.1467 16 6 0.9789 -4.8925 -0.6710 17 6 0.6263 -6.3248 -0.5096 18 6 -0.5708 -6.8131 -1.0292 19 6 -0.8914 -8.1473 -0.8804 20 6 -0.0318 -8.9969 -0.2077 21 6 1.1554 -8.5165 0.3147 22 6 1.4882 -7.1851 0.1676 23 6 0.1167 -4.0321 -1.3477 24 6 0.4496 -2.7008 -1.4948 25 1 -0.3632 -1.0253 0.0709 26 1 -0.3634 0.5739 0.8525 27 1 -0.3633 0.4512 -0.9233 28 1 3.0797 1.3444 -0.1082 29 1 1.5611 1.9274 -0.8309 30 1 2.9863 4.9181 0.7769 31 1 1.5612 -0.3872 -2.0627 32 1 3.0798 -0.6611 -1.1756 33 1 3.4266 -2.6916 0.0978 34 1 2.8455 -5.0656 0.3784 35 1 -1.2445 -6.1497 -1.5512 36 1 -1.8171 -8.5277 -1.2864 37 1 -0.2887 -10.0392 -0.0896 38 1 1.8227 -9.1841 0.8394 39 1 2.4153 -6.8108 0.5762 40 1 -0.8102 -4.4064 -1.7564 41 1 -0.2177 -2.0332 -2.0196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052869777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:26 Heat of formation + Delta-G solvation = 49.957267 kcal Electronic energy + Delta-G solvation = -20299.834956 eV Core-core repulsion = 17337.068887 eV Total energy + Delta-G solvation = -2962.766069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94879 -38.56728 -36.32852 -33.15226 -32.22767 -31.54222 -30.50200 -29.59358 -27.09976 -26.43518 -24.10027 -23.50880 -22.41357 -21.43472 -20.72696 -20.04381 -17.64294 -16.40990 -16.01552 -15.54130 -15.33785 -14.85366 -14.51168 -14.31279 -14.15007 -13.86578 -13.62403 -13.45436 -13.32180 -13.01027 -12.60611 -12.19669 -11.92718 -11.60976 -11.46807 -11.36126 -11.03832 -11.02173 -10.88331 -10.64972 -10.54681 -10.41103 -9.86370 -9.59025 -9.22690 -9.13580 -8.76584 -8.43782 -7.92229 -7.24249 -6.02792 -4.04108 0.66086 1.22195 1.57987 1.92486 3.33859 3.37638 3.40929 3.56961 4.09106 4.43743 4.53981 4.61122 4.76562 4.85758 5.04473 5.11342 5.13869 5.24256 5.26178 5.29094 5.34700 5.56710 5.63181 5.76100 5.82947 5.89745 6.00621 6.14234 6.19637 6.24398 6.26758 6.29408 6.32131 6.36290 6.56048 6.74409 6.76216 6.81519 6.90269 7.13407 7.27341 7.32895 7.79263 8.07070 8.18946 8.53627 9.03268 9.59932 11.08056 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034034 B = 0.002835 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.503708 B = 9873.359553 C =10011.080163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.086 3.914 13 C -0.053 4.053 14 C -0.098 4.098 15 C -0.109 4.109 16 C -0.065 4.065 17 C -0.032 4.032 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.110 4.110 24 C -0.113 4.113 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.010 0.990 28 H 0.030 0.970 29 H -0.009 1.009 30 H 0.262 0.738 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 -23.052 -4.547 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.042 4.042 13 C -0.053 4.053 14 C -0.117 4.117 15 C -0.127 4.127 16 C -0.065 4.065 17 C -0.032 4.032 18 C -0.134 4.134 19 C -0.136 4.136 20 C -0.146 4.146 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.132 4.132 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.028 0.972 28 H 0.048 0.952 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.186 -23.068 -4.151 23.810 hybrid contribution -0.496 0.986 0.118 1.110 sum -4.682 -22.082 -4.033 22.930 Atomic orbital electron populations 1.22287 0.88890 0.99806 1.00409 1.62157 1.07100 1.17610 1.38941 1.19756 0.95403 0.81364 0.96709 1.21121 1.34879 0.96889 1.01685 0.91894 1.24991 0.95306 0.97323 0.97009 1.69947 1.38347 1.11508 1.34102 0.86549 0.78702 0.78312 0.83784 1.20141 1.21355 1.20286 1.21094 1.00549 0.89207 0.93332 1.20083 0.93835 0.95876 0.95535 1.21007 1.00059 0.92643 0.97969 1.21160 0.96107 0.95679 0.99712 1.18671 0.95582 0.91695 1.00538 1.18874 0.94458 0.92364 0.97500 1.21263 0.96408 0.95643 1.00052 1.21081 0.99620 0.93570 0.99347 1.21173 0.94845 0.99701 0.98881 1.21088 0.97078 0.95465 0.99947 1.21282 0.99643 0.93381 0.98998 1.21097 0.99036 0.93330 0.99322 1.21012 0.96662 0.95053 1.00475 0.93286 0.90768 0.97169 0.95175 0.99085 0.92864 0.94961 0.90414 0.85573 0.86077 0.85742 0.86056 0.86254 0.86019 0.85651 0.86194 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 8.95 60.07 0.54 1.23 16 2 N -0.53 -11.66 4.74 -245.83 -1.17 -12.82 16 3 C 0.19 5.04 4.72 -4.98 -0.02 5.01 16 4 C -0.51 -14.33 8.46 -34.44 -0.29 -14.63 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.09 1.56 5.11 -4.98 -0.03 1.54 16 13 C -0.05 -0.83 4.89 -104.56 -0.51 -1.34 16 14 C -0.10 -1.44 9.68 -39.63 -0.38 -1.83 16 15 C -0.11 -1.42 9.43 -39.25 -0.37 -1.79 16 16 C -0.06 -0.84 5.88 -104.90 -0.62 -1.45 16 17 C -0.03 -0.37 5.88 -104.90 -0.62 -0.99 16 18 C -0.12 -1.19 9.43 -39.25 -0.37 -1.56 16 19 C -0.12 -1.06 10.03 -39.63 -0.40 -1.45 16 20 C -0.13 -1.10 10.04 -39.52 -0.40 -1.49 16 21 C -0.12 -1.06 10.03 -39.63 -0.40 -1.46 16 22 C -0.12 -1.20 9.43 -39.25 -0.37 -1.57 16 23 C -0.11 -1.41 9.43 -39.25 -0.37 -1.78 16 24 C -0.11 -1.61 7.94 -39.63 -0.31 -1.92 16 25 H 0.05 0.87 6.16 -51.93 -0.32 0.55 16 26 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 29 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 32 H 0.08 1.39 7.87 -51.93 -0.41 0.98 16 33 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.12 1.31 6.21 -52.49 -0.33 0.98 16 35 H 0.12 1.11 6.21 -52.49 -0.33 0.78 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 1.14 6.21 -52.49 -0.33 0.81 16 40 H 0.12 1.25 6.21 -52.49 -0.33 0.92 16 41 H 0.12 1.58 8.03 -52.48 -0.42 1.16 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -30.86 337.24 -11.06 -41.92 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.68 Total: -0.86 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -5.01 Total: -24.01 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.43 Total: -38.87 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.86 -11.06 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052869777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.882 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds