Wall clock time and date at job start Tue Mar 31 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 H 1.07997 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47285 * 59.99070 * 8 6 4 10 10 H 1.48494 * 109.47400 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46709 * 299.99808 * 8 6 4 12 12 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 13 13 C 1.50697 * 109.47095 * 293.94952 * 12 2 1 14 14 C 1.38318 * 119.88228 * 269.72693 * 13 12 2 15 15 C 1.38023 * 120.12338 * 179.76707 * 14 13 12 16 16 C 1.39332 * 119.87403 * 0.51000 * 15 14 13 17 17 C 1.48393 * 120.12250 * 179.72350 * 16 15 14 18 18 C 1.39332 * 120.12233 * 179.74004 * 17 16 15 19 19 C 1.38025 * 119.87277 * 179.76590 * 18 17 16 20 20 C 1.38316 * 120.12205 * 0.51600 * 19 18 17 21 21 C 1.38318 * 120.24808 * 359.73954 * 20 19 18 22 22 C 1.38022 * 120.11688 * 0.02562 * 21 20 19 23 23 C 1.39340 * 119.76088 * 359.74519 * 16 15 14 24 24 C 1.38013 * 119.87601 * 359.97438 * 23 16 15 25 25 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 26 26 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 27 27 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 28 28 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 29 29 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 30 30 H 0.96993 * 120.00117 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.47062 * 53.95734 * 12 2 1 32 32 H 1.09003 * 109.46753 * 173.95421 * 12 2 1 33 33 H 1.08003 * 119.93792 * 0.02562 * 14 13 12 34 34 H 1.07992 * 120.05939 * 180.23402 * 15 14 13 35 35 H 1.07999 * 120.06438 * 0.03130 * 18 17 16 36 36 H 1.08000 * 119.93677 * 180.25538 * 19 18 17 37 37 H 1.08000 * 119.87898 * 179.71748 * 20 19 18 38 38 H 1.07998 * 119.94147 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.06256 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.06093 * 179.97438 * 23 16 15 41 41 H 1.08004 * 119.93958 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5818 4.1873 3.1377 9 1 2.1734 3.4304 4.2700 10 1 2.1139 5.5736 3.1378 11 1 0.1045 4.2237 3.2849 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4990 -3.0711 -0.3047 15 6 2.1735 -4.4031 -0.1467 16 6 0.9789 -4.8925 -0.6710 17 6 0.6263 -6.3248 -0.5096 18 6 -0.5708 -6.8131 -1.0292 19 6 -0.8914 -8.1473 -0.8804 20 6 -0.0318 -8.9969 -0.2077 21 6 1.1554 -8.5165 0.3147 22 6 1.4882 -7.1851 0.1676 23 6 0.1167 -4.0321 -1.3477 24 6 0.4496 -2.7008 -1.4948 25 1 -0.3632 -1.0253 0.0709 26 1 -0.3634 0.5739 0.8525 27 1 -0.3633 0.4512 -0.9233 28 1 3.0797 1.3444 -0.1082 29 1 1.5611 1.9274 -0.8309 30 1 2.9863 4.9181 0.7769 31 1 1.5612 -0.3872 -2.0627 32 1 3.0798 -0.6611 -1.1756 33 1 3.4266 -2.6916 0.0978 34 1 2.8455 -5.0656 0.3784 35 1 -1.2445 -6.1497 -1.5512 36 1 -1.8171 -8.5277 -1.2864 37 1 -0.2887 -10.0392 -0.0896 38 1 1.8227 -9.1841 0.8394 39 1 2.4153 -6.8108 0.5762 40 1 -0.8102 -4.4064 -1.7564 41 1 -0.2177 -2.0332 -2.0196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052869777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:26 Heat of formation + Delta-G solvation = 34.162935 kcal Electronic energy + Delta-G solvation = -20300.519850 eV Core-core repulsion = 17337.068887 eV Total energy + Delta-G solvation = -2963.450963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88587 -39.53914 -37.89279 -34.87460 -33.66559 -32.39605 -31.38861 -30.75595 -29.02767 -27.83335 -25.70453 -24.39283 -23.64611 -22.34527 -22.14904 -21.31988 -18.61681 -18.35918 -16.90509 -16.81980 -16.59743 -16.34380 -16.02992 -15.64582 -15.15393 -14.92044 -14.88924 -14.68161 -14.20777 -14.01880 -13.90456 -13.71101 -13.36071 -13.18891 -12.81358 -12.71166 -12.61823 -12.46709 -12.25418 -12.19111 -11.97032 -11.74080 -11.49362 -11.29343 -10.63282 -10.49894 -9.84187 -9.81426 -9.08326 -8.82595 -8.21016 -6.31478 -0.23114 0.51486 0.53495 0.99515 1.40659 1.43956 1.51974 2.39765 2.68411 3.10951 3.14618 3.51866 3.66470 3.79147 3.94883 4.03487 4.12701 4.17248 4.34848 4.36275 4.47491 4.52992 4.54544 4.60133 4.69206 4.73115 4.86143 4.94202 5.04985 5.10139 5.12836 5.16718 5.23206 5.26475 5.38613 5.43630 5.62968 5.63395 5.63981 5.75771 5.83981 6.02378 6.06477 6.13394 6.30444 6.59157 6.83984 7.38009 8.89679 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034034 B = 0.002835 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.503708 B = 9873.359553 C =10011.080163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.091 3.909 13 C -0.076 4.076 14 C -0.109 4.109 15 C -0.113 4.113 16 C -0.060 4.060 17 C -0.059 4.059 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.112 4.112 24 C -0.116 4.116 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.013 0.987 28 H 0.005 0.995 29 H -0.036 1.036 30 H 0.265 0.735 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -25.507 -3.754 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.192 1.192 12 C -0.037 4.037 13 C -0.076 4.076 14 C -0.127 4.127 15 C -0.131 4.131 16 C -0.060 4.060 17 C -0.059 4.059 18 C -0.142 4.142 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.024 0.976 29 H -0.018 1.018 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.540 -25.549 -3.365 26.358 hybrid contribution -0.093 1.544 -0.176 1.557 sum -5.634 -24.005 -3.541 24.910 Atomic orbital electron populations 1.22230 0.87657 1.01056 0.99730 1.62057 1.08283 1.15115 1.41210 1.19409 0.93770 0.83566 0.95136 1.21423 1.35029 0.97529 1.02345 0.92023 1.25918 0.94976 0.97991 1.00744 1.70074 1.39242 1.11934 1.36202 0.85430 0.78844 0.77187 0.79128 1.19370 1.20706 1.19223 1.21049 1.00006 0.90594 0.92023 1.19873 0.95411 0.94290 0.98044 1.21078 1.00000 0.93459 0.98180 1.21368 0.96761 0.95178 0.99791 1.18956 0.95115 0.92713 0.99225 1.18945 0.95781 0.91743 0.99474 1.21488 0.96135 0.96638 0.99980 1.21417 1.00611 0.93084 0.99087 1.21577 0.94296 1.00992 0.97569 1.21409 0.97741 0.95219 0.99880 1.21492 0.99865 0.94092 0.98961 1.21358 0.99958 0.92637 0.99012 1.21107 0.96090 0.95955 1.00319 0.90756 0.92569 0.96819 0.97647 1.01819 0.92621 0.94792 0.91121 0.85853 0.84093 0.84778 0.83750 0.83715 0.83873 0.85030 0.83756 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 8.95 127.69 1.14 2.81 16 2 N -0.54 -24.38 4.74 -931.66 -4.42 -28.80 16 3 C 0.21 11.32 4.72 85.56 0.40 11.73 16 4 C -0.53 -30.37 8.46 25.60 0.22 -30.15 16 5 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 6 C 0.00 0.10 5.46 84.66 0.46 0.56 16 7 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 8 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 C 0.09 3.41 5.11 85.56 0.44 3.84 16 13 C -0.08 -2.40 4.89 -19.83 -0.10 -2.50 16 14 C -0.11 -3.21 9.68 22.24 0.22 -2.99 16 15 C -0.11 -2.87 9.43 22.48 0.21 -2.66 16 16 C -0.06 -1.47 5.88 -20.04 -0.12 -1.58 16 17 C -0.06 -1.27 5.88 -20.04 -0.12 -1.39 16 18 C -0.12 -2.27 9.43 22.48 0.21 -2.06 16 19 C -0.12 -1.84 10.03 22.24 0.22 -1.61 16 20 C -0.13 -1.75 10.04 22.31 0.22 -1.52 16 21 C -0.12 -1.90 10.03 22.24 0.22 -1.68 16 22 C -0.13 -2.38 9.43 22.48 0.21 -2.17 16 23 C -0.11 -2.68 9.43 22.48 0.21 -2.47 16 24 C -0.12 -3.19 7.94 22.24 0.18 -3.02 16 25 H 0.07 2.59 6.16 -2.39 -0.01 2.58 16 26 H 0.06 2.44 6.76 -2.39 -0.02 2.42 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.01 0.32 7.93 -2.39 -0.02 0.30 16 29 H -0.04 -2.11 8.12 -2.39 -0.02 -2.13 16 30 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.03 1.24 8.06 -2.39 -0.02 1.22 16 32 H 0.07 2.68 7.87 -2.39 -0.02 2.66 16 33 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.14 2.88 6.21 -2.91 -0.02 2.86 16 35 H 0.13 2.05 6.21 -2.91 -0.02 2.03 16 36 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.13 2.17 6.21 -2.91 -0.02 2.15 16 40 H 0.14 2.66 6.21 -2.91 -0.02 2.64 16 41 H 0.13 3.23 8.03 -2.91 -0.02 3.21 16 Total: -1.00 -67.02 337.24 3.14 -63.88 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.01 Total: 11.49 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 4.24 Total: -36.86 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -4.14 Total: -85.33 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.02 3.14 -63.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052869777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.039 kcal (2) G-P(sol) polarization free energy of solvation -67.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds