Wall clock time and date at job start Tue Mar 31 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47085 * 2 1 4 4 H 1.09001 * 109.46956 * 178.99239 * 3 2 1 5 5 C 1.50702 * 109.46920 * 298.99002 * 3 2 1 6 6 H 1.07996 * 119.99456 * 120.00536 * 5 3 2 7 7 C 1.37878 * 120.00054 * 299.99595 * 5 3 2 8 8 N 1.31511 * 119.99614 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99832 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47350 * 89.99612 * 9 7 5 11 11 H 1.48502 * 109.46547 * 209.99613 * 9 7 5 12 12 H 1.48503 * 109.47236 * 329.99101 * 9 7 5 13 13 N 1.46898 * 109.46939 * 58.99246 * 3 2 1 14 14 C 1.46903 * 111.00389 * 85.83922 * 13 3 2 15 15 H 1.09000 * 109.46462 * 327.23350 * 14 13 3 16 16 C 1.52994 * 109.47065 * 87.23373 * 14 13 3 17 17 C 1.50697 * 109.46877 * 207.23764 * 14 13 3 18 18 C 1.38258 * 119.94246 * 319.99607 * 17 14 13 19 19 C 1.38183 * 120.09835 * 179.97438 * 18 17 14 20 20 C 1.38656 * 119.96517 * 0.02562 * 19 18 17 21 21 O 1.35960 * 120.05774 * 180.02562 * 20 19 18 22 22 C 1.42898 * 117.00009 * 359.97438 * 21 20 19 23 23 C 1.38898 * 119.87967 * 359.97438 * 20 19 18 24 24 F 1.35101 * 120.04918 * 180.02562 * 23 20 19 25 25 C 1.38265 * 119.93511 * 139.99726 * 17 14 13 26 26 H 1.08995 * 109.46977 * 296.15503 * 1 2 3 27 27 H 1.08997 * 109.47283 * 56.15890 * 1 2 3 28 28 H 1.09009 * 109.46821 * 176.15634 * 1 2 3 29 29 H 1.08997 * 109.47018 * 239.99886 * 2 1 3 30 30 H 1.09004 * 109.47112 * 120.00104 * 2 1 3 31 31 H 0.97002 * 119.99580 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99655 * 209.78674 * 13 3 2 33 33 H 1.09001 * 109.47251 * 180.02562 * 16 14 13 34 34 H 1.08995 * 109.47426 * 300.00258 * 16 14 13 35 35 H 1.08997 * 109.47004 * 60.00518 * 16 14 13 36 36 H 1.08007 * 119.94712 * 0.02562 * 18 17 14 37 37 H 1.07995 * 120.01219 * 180.29497 * 19 18 17 38 38 H 1.09003 * 109.46903 * 179.97438 * 22 21 20 39 39 H 1.08995 * 109.47571 * 300.00342 * 22 21 20 40 40 H 1.09005 * 109.46889 * 60.00670 * 22 21 20 41 41 H 1.08004 * 119.98054 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0181 5 6 1.5582 2.1456 -1.2428 6 1 0.9358 3.0242 -1.1591 7 6 1.9121 1.6672 -2.4866 8 7 1.4911 2.2806 -3.5711 9 14 2.9882 0.1472 -2.6311 10 1 2.1301 -1.0636 -2.6839 11 1 3.8010 0.2323 -3.8710 12 1 3.8891 0.0646 -1.4534 13 7 1.5305 2.1419 1.1871 14 6 2.4058 1.9191 2.3456 15 1 2.8442 0.9231 2.2834 16 6 3.5202 2.9674 2.3520 17 6 1.5999 2.0349 3.6137 18 6 0.6311 3.0145 3.7286 19 6 -0.1102 3.1233 4.8897 20 6 0.1180 2.2491 5.9414 21 8 -0.6106 2.3540 7.0845 22 6 -1.5949 3.3888 7.1337 23 6 1.0916 1.2653 5.8247 24 9 1.3164 0.4114 6.8472 25 6 1.8307 1.1611 4.6601 26 1 -0.3633 0.4530 0.9224 27 1 -0.3634 0.5723 -0.8535 28 1 -0.3633 -1.0255 -0.0689 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7398 1.9438 -4.4461 32 1 1.4163 3.1277 1.0046 33 1 4.1699 2.8018 3.2113 34 1 4.1030 2.8837 1.4348 35 1 3.0817 3.9633 2.4142 36 1 0.4529 3.6953 2.9092 37 1 -0.8699 3.8860 4.9761 38 1 -2.1029 3.3614 8.0978 39 1 -1.1111 4.3570 7.0049 40 1 -2.3220 3.2369 6.3359 41 1 2.5883 0.3970 4.5680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:06 Heat of formation + Delta-G solvation = -57.341416 kcal Electronic energy + Delta-G solvation = -22356.205909 eV Core-core repulsion = 18958.017795 eV Total energy + Delta-G solvation = -3398.188114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.69835 -40.07634 -38.28977 -36.45333 -33.60031 -31.70345 -30.72863 -29.83621 -28.43246 -27.23491 -26.24866 -23.36064 -23.17080 -22.59203 -20.64587 -19.22655 -18.35293 -17.06153 -16.69000 -16.26516 -16.17244 -15.51141 -15.05942 -14.82336 -14.49621 -14.29075 -14.03570 -13.71947 -13.28030 -12.95408 -12.79410 -12.63232 -12.43247 -12.31281 -12.06604 -12.00111 -11.49334 -11.29439 -11.08029 -10.92270 -10.78813 -10.59179 -10.38970 -10.20262 -10.01499 -9.34126 -8.99307 -8.86174 -8.60974 -8.03343 -7.53690 -6.13063 -4.11968 1.21191 1.32626 3.06423 3.25411 3.34377 3.36138 3.63800 4.24202 4.35930 4.64375 4.74802 4.96260 4.98845 5.11260 5.20537 5.24754 5.29146 5.33647 5.47185 5.51068 5.65727 5.81893 5.95085 6.11605 6.14535 6.18769 6.21640 6.28107 6.40798 6.48614 6.65141 6.69937 6.76909 6.91234 7.10053 7.21791 7.24930 7.46660 7.57815 7.87799 8.27920 8.56288 8.91171 9.49596 10.99696 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.004136 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.583113 B = 6768.373429 C = 6957.267283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.187 3.813 4 H 0.003 0.997 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.667 5.667 14 C 0.119 3.881 15 H 0.081 0.919 16 C -0.174 4.174 17 C -0.059 4.059 18 C -0.064 4.064 19 C -0.182 4.182 20 C 0.081 3.919 21 O -0.315 6.315 22 C 0.028 3.972 23 C 0.065 3.935 24 F -0.139 7.139 25 C -0.116 4.116 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.019 0.981 29 H 0.041 0.959 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.340 0.660 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 1.727 17.959 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.298 5.298 14 C 0.008 3.992 15 H 0.099 0.901 16 C -0.233 4.233 17 C -0.060 4.060 18 C -0.083 4.083 19 C -0.200 4.200 20 C 0.036 3.964 21 O -0.229 6.229 22 C -0.067 4.067 23 C 0.045 3.955 24 F -0.117 7.117 25 C -0.136 4.136 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.015 1.082 18.122 18.266 hybrid contribution 1.169 -0.322 -0.417 1.283 sum -0.846 0.761 17.705 17.741 Atomic orbital electron populations 1.21457 0.95552 0.98275 1.02880 1.21761 0.97438 0.98176 0.97740 1.19578 0.92916 0.91217 0.88503 0.97958 1.20995 1.32489 1.13273 0.88382 0.90370 1.24882 0.95489 0.96705 0.95745 1.69883 1.45371 1.40468 0.97822 0.86878 0.80824 0.83862 0.76798 1.20407 1.22617 1.19395 1.60587 1.48213 1.16499 1.04452 1.20444 0.90615 0.99217 0.88940 0.90084 1.22471 0.99261 0.99472 1.02079 1.19753 0.96990 0.94459 0.94792 1.20862 0.93625 0.97590 0.96179 1.21123 1.03708 1.01290 0.93910 1.18937 0.93756 0.96279 0.87467 1.86097 1.49100 1.53392 1.34300 1.23065 0.90349 0.89803 1.03508 1.16873 0.99452 0.92052 0.87111 1.91467 1.94011 1.68585 1.57661 1.20860 1.00311 1.00933 0.91464 0.92661 0.91439 0.96202 0.94118 0.95137 0.92602 0.84061 0.92823 0.91749 0.92384 0.84710 0.84808 0.88299 0.92571 0.92437 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.52 37.16 0.35 -2.23 16 2 C -0.11 -2.44 5.27 -26.73 -0.14 -2.58 16 3 C 0.19 4.10 1.70 -68.87 -0.12 3.99 16 4 H 0.00 0.07 6.34 -51.93 -0.33 -0.26 16 5 C -0.51 -13.41 7.89 -34.44 -0.27 -13.68 16 6 H 0.08 2.21 7.85 -52.49 -0.41 1.80 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -26.46 13.96 55.43 0.77 -25.69 16 9 Si 0.89 21.51 24.38 -169.99 -4.14 17.37 16 10 H -0.28 -6.66 6.86 56.52 0.39 -6.27 16 11 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.67 -12.17 4.74 -102.17 -0.48 -12.65 16 14 C 0.12 1.82 2.59 -68.87 -0.18 1.65 16 15 H 0.08 1.30 7.04 -51.93 -0.37 0.93 16 16 C -0.17 -2.42 9.12 37.15 0.34 -2.08 16 17 C -0.06 -0.83 4.96 -104.61 -0.52 -1.35 16 18 C -0.06 -0.84 9.32 -39.59 -0.37 -1.21 16 19 C -0.18 -2.19 9.04 -39.45 -0.36 -2.55 16 20 C 0.08 1.10 6.69 -39.18 -0.26 0.84 16 21 O -0.32 -4.00 10.36 -19.61 -0.20 -4.20 16 22 C 0.03 0.22 9.81 101.05 0.99 1.21 16 23 C 0.06 0.94 7.31 -39.30 -0.29 0.65 16 24 F -0.14 -2.10 17.11 2.25 0.04 -2.06 16 25 C -0.12 -1.60 9.64 -39.54 -0.38 -1.98 16 26 H 0.05 1.10 7.70 -51.93 -0.40 0.70 16 27 H 0.07 1.56 7.12 -51.93 -0.37 1.19 16 28 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.04 0.93 3.25 -51.93 -0.17 0.77 16 30 H 0.03 0.59 7.53 -51.93 -0.39 0.20 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.34 6.16 7.36 -39.29 -0.29 5.87 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.98 7.61 -51.93 -0.40 0.59 16 35 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 36 H 0.14 1.69 7.31 -52.48 -0.38 1.31 16 37 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 40 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 41 H 0.14 1.68 8.03 -52.48 -0.42 1.26 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -29.46 328.98 -6.28 -35.74 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.92 Total: 3.92 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -1.29 Total: -17.38 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.29 Total: -38.34 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.46 -6.28 -35.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.599 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds