Wall clock time and date at job start Tue Mar 31 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47085 * 2 1 4 4 H 1.09001 * 109.46956 * 178.99239 * 3 2 1 5 5 C 1.50702 * 109.46920 * 298.99002 * 3 2 1 6 6 H 1.07996 * 119.99456 * 120.00536 * 5 3 2 7 7 C 1.37878 * 120.00054 * 299.99595 * 5 3 2 8 8 N 1.31511 * 119.99614 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99832 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47350 * 89.99612 * 9 7 5 11 11 H 1.48502 * 109.46547 * 209.99613 * 9 7 5 12 12 H 1.48503 * 109.47236 * 329.99101 * 9 7 5 13 13 N 1.46898 * 109.46939 * 58.99246 * 3 2 1 14 14 C 1.46903 * 111.00389 * 85.83922 * 13 3 2 15 15 H 1.09000 * 109.46462 * 327.23350 * 14 13 3 16 16 C 1.52994 * 109.47065 * 87.23373 * 14 13 3 17 17 C 1.50697 * 109.46877 * 207.23764 * 14 13 3 18 18 C 1.38258 * 119.94246 * 319.99607 * 17 14 13 19 19 C 1.38183 * 120.09835 * 179.97438 * 18 17 14 20 20 C 1.38656 * 119.96517 * 0.02562 * 19 18 17 21 21 O 1.35960 * 120.05774 * 180.02562 * 20 19 18 22 22 C 1.42898 * 117.00009 * 359.97438 * 21 20 19 23 23 C 1.38898 * 119.87967 * 359.97438 * 20 19 18 24 24 F 1.35101 * 120.04918 * 180.02562 * 23 20 19 25 25 C 1.38265 * 119.93511 * 139.99726 * 17 14 13 26 26 H 1.08995 * 109.46977 * 296.15503 * 1 2 3 27 27 H 1.08997 * 109.47283 * 56.15890 * 1 2 3 28 28 H 1.09009 * 109.46821 * 176.15634 * 1 2 3 29 29 H 1.08997 * 109.47018 * 239.99886 * 2 1 3 30 30 H 1.09004 * 109.47112 * 120.00104 * 2 1 3 31 31 H 0.97002 * 119.99580 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99655 * 209.78674 * 13 3 2 33 33 H 1.09001 * 109.47251 * 180.02562 * 16 14 13 34 34 H 1.08995 * 109.47426 * 300.00258 * 16 14 13 35 35 H 1.08997 * 109.47004 * 60.00518 * 16 14 13 36 36 H 1.08007 * 119.94712 * 0.02562 * 18 17 14 37 37 H 1.07995 * 120.01219 * 180.29497 * 19 18 17 38 38 H 1.09003 * 109.46903 * 179.97438 * 22 21 20 39 39 H 1.08995 * 109.47571 * 300.00342 * 22 21 20 40 40 H 1.09005 * 109.46889 * 60.00670 * 22 21 20 41 41 H 1.08004 * 119.98054 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0181 5 6 1.5582 2.1456 -1.2428 6 1 0.9358 3.0242 -1.1591 7 6 1.9121 1.6672 -2.4866 8 7 1.4911 2.2806 -3.5711 9 14 2.9882 0.1472 -2.6311 10 1 2.1301 -1.0636 -2.6839 11 1 3.8010 0.2323 -3.8710 12 1 3.8891 0.0646 -1.4534 13 7 1.5305 2.1419 1.1871 14 6 2.4058 1.9191 2.3456 15 1 2.8442 0.9231 2.2834 16 6 3.5202 2.9674 2.3520 17 6 1.5999 2.0349 3.6137 18 6 0.6311 3.0145 3.7286 19 6 -0.1102 3.1233 4.8897 20 6 0.1180 2.2491 5.9414 21 8 -0.6106 2.3540 7.0845 22 6 -1.5949 3.3888 7.1337 23 6 1.0916 1.2653 5.8247 24 9 1.3164 0.4114 6.8472 25 6 1.8307 1.1611 4.6601 26 1 -0.3633 0.4530 0.9224 27 1 -0.3634 0.5723 -0.8535 28 1 -0.3633 -1.0255 -0.0689 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7398 1.9438 -4.4461 32 1 1.4163 3.1277 1.0046 33 1 4.1699 2.8018 3.2113 34 1 4.1030 2.8837 1.4348 35 1 3.0817 3.9633 2.4142 36 1 0.4529 3.6953 2.9092 37 1 -0.8699 3.8860 4.9761 38 1 -2.1029 3.3614 8.0978 39 1 -1.1111 4.3570 7.0049 40 1 -2.3220 3.2369 6.3359 41 1 2.5883 0.3970 4.5680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:06 Heat of formation + Delta-G solvation = -75.508911 kcal Electronic energy + Delta-G solvation = -22356.993710 eV Core-core repulsion = 18958.017795 eV Total energy + Delta-G solvation = -3398.975916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.79640 -41.05388 -39.43356 -37.84975 -35.14724 -33.62605 -31.75429 -31.06299 -29.65256 -28.11392 -27.95171 -24.98170 -24.45777 -23.63460 -21.96265 -20.80176 -19.32236 -18.63051 -17.90422 -17.53418 -17.24206 -17.10184 -16.01581 -15.93261 -15.69560 -15.61152 -15.28949 -15.10687 -14.88031 -14.64857 -14.25713 -13.79756 -13.71958 -13.51300 -13.27872 -12.93024 -12.85758 -12.66134 -12.45811 -12.35200 -12.12967 -12.01306 -11.90202 -11.78022 -11.61697 -11.20431 -10.88809 -10.66870 -9.87560 -9.12025 -8.97946 -8.25798 -6.26818 0.19686 0.29332 1.33054 1.36463 1.45344 2.24464 2.34005 2.60480 3.10887 3.19379 3.51305 3.81313 3.89796 4.12934 4.24541 4.31808 4.41261 4.41798 4.44711 4.45689 4.49465 4.59782 4.70865 4.74398 4.79776 4.88795 4.99343 5.05387 5.14969 5.20297 5.24309 5.32855 5.38269 5.47650 5.59739 5.69149 5.71081 5.78860 6.07736 6.33672 6.57485 6.71701 6.91161 7.38680 8.90319 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.004136 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.583113 B = 6768.373429 C = 6957.267283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C 0.193 3.807 4 H -0.002 1.002 5 C -0.502 4.502 6 H 0.045 0.955 7 C 0.020 3.980 8 N -0.946 5.946 9 Si 0.938 3.062 10 H -0.272 1.272 11 H -0.303 1.303 12 H -0.250 1.250 13 N -0.665 5.665 14 C 0.122 3.878 15 H 0.078 0.922 16 C -0.169 4.169 17 C -0.069 4.069 18 C -0.067 4.067 19 C -0.175 4.175 20 C 0.080 3.920 21 O -0.335 6.335 22 C 0.017 3.983 23 C 0.042 3.958 24 F -0.147 7.147 25 C -0.114 4.114 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.340 0.660 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 1.259 19.936 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.154 4.154 3 C 0.084 3.916 4 H 0.016 0.984 5 C -0.541 4.541 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.586 5.586 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.231 1.231 12 H -0.174 1.174 13 N -0.296 5.296 14 C 0.012 3.988 15 H 0.096 0.904 16 C -0.227 4.227 17 C -0.070 4.070 18 C -0.085 4.085 19 C -0.194 4.194 20 C 0.034 3.966 21 O -0.249 6.249 22 C -0.077 4.077 23 C 0.023 3.977 24 F -0.126 7.126 25 C -0.134 4.134 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.179 0.821 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.947 0.617 20.140 20.243 hybrid contribution 1.044 -0.068 -0.913 1.389 sum -0.903 0.549 19.227 19.256 Atomic orbital electron populations 1.21348 0.95141 0.99045 1.01776 1.21759 0.97811 0.97523 0.98301 1.19369 0.92413 0.91697 0.88144 0.98428 1.21244 1.30661 1.12036 0.90136 0.93659 1.25610 0.97038 0.99530 0.95563 1.70021 1.47677 1.42557 0.98396 0.86005 0.79532 0.80680 0.77086 1.19802 1.23113 1.17435 1.60510 1.48951 1.16213 1.03890 1.20430 0.90736 0.99502 0.88164 0.90375 1.22399 0.98888 0.99389 1.02069 1.19594 0.97682 0.95412 0.94290 1.20995 0.93454 0.97365 0.96725 1.21346 1.03773 1.01370 0.92883 1.19104 0.93456 0.95979 0.88067 1.86084 1.49820 1.54994 1.33988 1.23406 0.89792 0.89312 1.05175 1.17118 1.00527 0.92769 0.87312 1.91437 1.94176 1.68966 1.58053 1.20931 1.00379 1.00951 0.91094 0.91877 0.94625 0.94209 0.95325 0.92617 0.92757 0.84128 0.90904 0.93357 0.91704 0.84318 0.82118 0.86207 0.91161 0.91546 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 9.52 71.98 0.69 -3.94 16 2 C -0.12 -4.75 5.27 30.59 0.16 -4.59 16 3 C 0.19 8.30 1.70 44.17 0.07 8.37 16 4 H 0.00 -0.08 6.34 -2.39 -0.02 -0.09 16 5 C -0.50 -26.55 7.89 25.60 0.20 -26.35 16 6 H 0.05 2.64 7.85 -2.91 -0.02 2.62 16 7 C 0.02 1.13 5.45 84.66 0.46 1.59 16 8 N -0.95 -57.24 13.96 21.45 0.30 -56.94 16 9 Si 0.94 44.07 24.38 68.60 1.67 45.75 16 10 H -0.27 -12.42 6.86 99.48 0.68 -11.74 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 12 H -0.25 -10.89 6.53 99.48 0.65 -10.24 16 13 N -0.67 -23.46 4.74 -477.17 -2.26 -25.72 16 14 C 0.12 3.51 2.59 44.17 0.11 3.63 16 15 H 0.08 2.31 7.04 -2.39 -0.02 2.29 16 16 C -0.17 -4.37 9.12 71.98 0.66 -3.71 16 17 C -0.07 -1.80 4.96 -19.85 -0.10 -1.90 16 18 C -0.07 -1.62 9.32 22.26 0.21 -1.41 16 19 C -0.18 -3.79 9.04 22.36 0.20 -3.58 16 20 C 0.08 2.00 6.69 22.53 0.15 2.15 16 21 O -0.33 -7.82 10.36 -93.09 -0.96 -8.78 16 22 C 0.02 0.22 9.81 113.37 1.11 1.34 16 23 C 0.04 1.16 7.31 22.45 0.16 1.33 16 24 F -0.15 -4.33 17.11 44.97 0.77 -3.56 16 25 C -0.11 -2.93 9.64 22.30 0.21 -2.71 16 26 H 0.06 2.39 7.70 -2.39 -0.02 2.37 16 27 H 0.03 1.62 7.12 -2.39 -0.02 1.61 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.03 1.25 3.25 -2.39 -0.01 1.24 16 30 H 0.06 2.01 7.53 -2.39 -0.02 1.99 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.34 12.09 7.36 -89.69 -0.66 11.43 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.40 7.61 -2.39 -0.02 1.38 16 35 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 36 H 0.14 3.22 7.31 -2.91 -0.02 3.20 16 37 H 0.16 2.50 6.30 -2.91 -0.02 2.48 16 38 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.73 7.67 -2.39 -0.02 0.71 16 40 H 0.07 0.76 7.66 -2.38 -0.02 0.74 16 41 H 0.15 3.34 8.03 -2.91 -0.02 3.32 16 Total: -1.00 -63.59 328.98 4.12 -59.47 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.30 Total: 19.58 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 4.31 Total: -29.80 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.96 Total: -82.66 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.96 Total: -8.78 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.77 Total: -3.56 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.67 Total: 45.75 kcal Total: -63.59 4.12 -59.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.043 kcal (2) G-P(sol) polarization free energy of solvation -63.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds