Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46905 * 2 1 4 4 H 1.09000 * 109.46836 * 305.04760 * 3 2 1 5 5 C 1.50705 * 109.46858 * 185.05117 * 3 2 1 6 6 H 1.07993 * 119.99948 * 239.99667 * 5 3 2 7 7 C 1.37873 * 119.99666 * 59.99824 * 5 3 2 8 8 N 1.31517 * 120.00811 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99878 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46967 * 60.00076 * 9 7 5 11 11 H 1.48500 * 109.47349 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46926 * 300.00286 * 9 7 5 13 13 N 1.46895 * 109.47154 * 65.05298 * 3 2 1 14 14 C 1.46906 * 110.99636 * 205.38407 * 13 3 2 15 15 H 1.09000 * 109.46968 * 326.16553 * 14 13 3 16 16 C 1.52992 * 109.47333 * 86.16851 * 14 13 3 17 17 C 1.50698 * 109.46840 * 206.16872 * 14 13 3 18 18 C 1.38267 * 119.93940 * 139.99973 * 17 14 13 19 19 C 1.38181 * 120.09825 * 180.02562 * 18 17 14 20 20 C 1.38667 * 119.96599 * 359.97438 * 19 18 17 21 21 O 1.35956 * 120.05773 * 179.72442 * 20 19 18 22 22 C 1.42903 * 117.00249 * 0.02562 * 21 20 19 23 23 C 1.38898 * 119.87728 * 0.02562 * 20 19 18 24 24 F 1.35104 * 120.05030 * 179.97438 * 23 20 19 25 25 C 1.38261 * 119.94039 * 319.97677 * 17 14 13 26 26 H 1.08995 * 109.47616 * 303.86735 * 1 2 3 27 27 H 1.09004 * 109.46983 * 63.86256 * 1 2 3 28 28 H 1.09000 * 109.47134 * 183.85822 * 1 2 3 29 29 H 1.08998 * 109.47196 * 239.99430 * 2 1 3 30 30 H 1.09002 * 109.46573 * 119.99356 * 2 1 3 31 31 H 0.96995 * 120.00865 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00255 * 81.43318 * 13 3 2 33 33 H 1.08994 * 109.47395 * 183.72192 * 16 14 13 34 34 H 1.09003 * 109.47183 * 303.72335 * 16 14 13 35 35 H 1.09008 * 109.47162 * 63.71954 * 16 14 13 36 36 H 1.07994 * 119.94961 * 0.02562 * 18 17 14 37 37 H 1.07991 * 120.01515 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47003 * 59.99838 * 22 21 20 39 39 H 1.08999 * 109.47024 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.46894 * 300.00282 * 22 21 20 41 41 H 1.07999 * 119.98211 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9818 -0.8413 5 6 3.5418 1.4444 -0.1251 6 1 4.1477 1.8887 0.6506 7 6 4.1421 0.8788 -1.2299 8 7 3.4043 0.3381 -2.1748 9 14 6.0037 0.8816 -1.3854 10 1 6.5973 0.1473 -0.2391 11 1 6.3955 0.2185 -2.6550 12 1 6.4982 2.2819 -1.3857 13 7 1.6524 2.0989 1.2557 14 6 1.5646 3.5552 1.0832 15 1 2.3160 3.8818 0.3643 16 6 0.1719 3.9247 0.5688 17 6 1.8074 4.2333 2.4069 18 6 2.5625 5.3903 2.4612 19 6 2.7877 6.0145 3.6733 20 6 2.2553 5.4804 4.8369 21 8 2.4803 6.0899 6.0312 22 6 3.2741 7.2781 6.0138 23 6 1.4969 4.3181 4.7809 24 9 0.9769 3.7943 5.9126 25 6 1.2743 3.6977 3.5647 26 1 -0.3634 0.5726 0.8532 27 1 -0.3633 0.4527 -0.9226 28 1 -0.3633 -1.0253 0.0691 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8266 -0.0595 -2.9523 32 1 2.2906 1.8608 2.0001 33 1 0.1278 4.9969 0.3780 34 1 -0.0298 3.3826 -0.3551 35 1 -0.5745 3.6577 1.3170 36 1 2.9769 5.8067 1.5551 37 1 3.3780 6.9179 3.7142 38 1 2.7908 8.0287 5.3883 39 1 3.3763 7.6616 7.0289 40 1 4.2609 7.0500 5.6108 41 1 0.6849 2.7939 3.5197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -68.484923 kcal Electronic energy + Delta-G solvation = -22292.226076 eV Core-core repulsion = 18893.554743 eV Total energy + Delta-G solvation = -3398.671333 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.60900 -40.04035 -38.15854 -36.08174 -33.35539 -31.50790 -30.62918 -29.62037 -28.58368 -27.23615 -25.96738 -23.29158 -22.76730 -22.27914 -20.09218 -19.39698 -18.28204 -16.86464 -16.73248 -16.42575 -16.13480 -14.99946 -14.88092 -14.83578 -14.65720 -14.20537 -13.80224 -13.54890 -13.11308 -12.76614 -12.60341 -12.39213 -12.09371 -12.03523 -11.76727 -11.47115 -11.29295 -11.17925 -11.10520 -10.90822 -10.77117 -10.65604 -10.44357 -10.11952 -9.58820 -9.51185 -9.06981 -8.79132 -8.38259 -8.00200 -7.31951 -6.01294 -4.14255 1.25500 1.35061 3.09054 3.26340 3.32019 3.34493 3.67740 4.31470 4.37809 4.71729 4.87111 4.94815 4.96348 5.14533 5.23692 5.26496 5.41382 5.43074 5.64273 5.91623 5.99578 6.06579 6.15923 6.22787 6.30329 6.40962 6.52720 6.54073 6.66002 6.72967 6.76989 6.85418 7.12286 7.18572 7.27852 7.44289 7.58647 7.76801 8.07604 8.13038 8.31266 8.63156 8.98136 9.53557 10.98784 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.004719 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.072882 B = 5932.374175 C = 6766.025197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.682 5.682 14 C 0.127 3.873 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.077 4.077 18 C -0.085 4.085 19 C -0.183 4.183 20 C 0.081 3.919 21 O -0.314 6.314 22 C 0.028 3.972 23 C 0.065 3.935 24 F -0.137 7.137 25 C -0.097 4.097 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.090 0.910 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.330 0.670 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 11.664 10.392 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.053 0.947 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.313 5.313 14 C 0.017 3.983 15 H 0.078 0.922 16 C -0.188 4.188 17 C -0.078 4.078 18 C -0.104 4.104 19 C -0.202 4.202 20 C 0.035 3.965 21 O -0.228 6.228 22 C -0.067 4.067 23 C 0.045 3.955 24 F -0.116 7.116 25 C -0.116 4.116 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.431 11.387 10.330 15.752 hybrid contribution 2.230 0.331 -0.150 2.259 sum -1.201 11.717 10.180 15.568 Atomic orbital electron populations 1.21716 0.98999 0.98464 1.00373 1.21490 0.92106 0.99201 1.01653 1.19178 0.92712 0.91251 0.86074 0.94735 1.21833 0.92767 1.38390 1.05529 0.92950 1.24909 0.97779 0.94967 0.95707 1.69861 1.34870 1.38143 1.09375 0.86745 0.86226 0.78157 0.77373 1.20301 1.21239 1.20459 1.61068 1.55356 1.04539 1.10300 1.20322 0.97214 0.89939 0.90830 0.92222 1.21765 0.96212 0.99392 1.01451 1.20052 0.96826 0.95282 0.95669 1.20978 0.97219 0.94904 0.97309 1.21041 1.04846 1.02589 0.91708 1.18963 0.98405 0.93350 0.85733 1.86107 1.68878 1.40391 1.27427 1.23057 0.94475 0.85360 1.03817 1.17012 1.01363 0.93818 0.83282 1.91475 1.85030 1.85943 1.49110 1.21001 1.00505 1.00755 0.89363 0.93089 0.94578 0.95726 0.89200 0.95150 0.92823 0.85281 0.93658 0.91999 0.92747 0.85124 0.84904 0.92620 0.88291 0.92556 0.83065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.85 37.16 0.37 -2.40 16 2 C -0.11 -2.47 5.45 -26.73 -0.15 -2.61 16 3 C 0.22 5.08 1.77 -68.86 -0.12 4.95 16 4 H 0.03 0.90 7.19 -51.93 -0.37 0.53 16 5 C -0.55 -14.23 8.29 -34.44 -0.29 -14.52 16 6 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.42 11.29 55.43 0.63 -23.79 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -13.42 4.84 -102.17 -0.49 -13.92 16 14 C 0.13 2.22 2.62 -68.87 -0.18 2.04 16 15 H 0.06 1.16 7.50 -51.93 -0.39 0.77 16 16 C -0.13 -2.06 9.40 37.15 0.35 -1.71 16 17 C -0.08 -1.20 4.71 -104.60 -0.49 -1.69 16 18 C -0.09 -1.17 9.66 -39.59 -0.38 -1.56 16 19 C -0.18 -2.30 9.04 -39.44 -0.36 -2.65 16 20 C 0.08 1.15 6.69 -39.18 -0.26 0.89 16 21 O -0.31 -4.15 10.36 -19.60 -0.20 -4.36 16 22 C 0.03 0.23 9.81 101.05 0.99 1.22 16 23 C 0.07 1.01 7.31 -39.30 -0.29 0.72 16 24 F -0.14 -2.22 17.11 2.25 0.04 -2.18 16 25 C -0.10 -1.49 8.95 -39.54 -0.35 -1.84 16 26 H 0.05 0.97 7.65 -51.93 -0.40 0.58 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.33 6.64 7.62 -39.29 -0.30 6.34 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.06 7.48 -51.93 -0.39 0.67 16 35 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.13 1.61 8.03 -52.49 -0.42 1.19 16 37 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 38 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 41 H 0.15 2.31 7.71 -52.49 -0.40 1.90 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -27.93 338.98 -7.39 -35.32 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.19 Total: 5.47 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -1.26 Total: -17.41 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.13 Total: -37.71 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.20 Total: -4.36 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.93 -7.39 -35.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.167 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds