Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46905 * 2 1 4 4 H 1.09000 * 109.46836 * 305.04760 * 3 2 1 5 5 C 1.50705 * 109.46858 * 185.05117 * 3 2 1 6 6 H 1.07993 * 119.99948 * 239.99667 * 5 3 2 7 7 C 1.37873 * 119.99666 * 59.99824 * 5 3 2 8 8 N 1.31517 * 120.00811 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99878 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46967 * 60.00076 * 9 7 5 11 11 H 1.48500 * 109.47349 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46926 * 300.00286 * 9 7 5 13 13 N 1.46895 * 109.47154 * 65.05298 * 3 2 1 14 14 C 1.46906 * 110.99636 * 205.38407 * 13 3 2 15 15 H 1.09000 * 109.46968 * 326.16553 * 14 13 3 16 16 C 1.52992 * 109.47333 * 86.16851 * 14 13 3 17 17 C 1.50698 * 109.46840 * 206.16872 * 14 13 3 18 18 C 1.38267 * 119.93940 * 139.99973 * 17 14 13 19 19 C 1.38181 * 120.09825 * 180.02562 * 18 17 14 20 20 C 1.38667 * 119.96599 * 359.97438 * 19 18 17 21 21 O 1.35956 * 120.05773 * 179.72442 * 20 19 18 22 22 C 1.42903 * 117.00249 * 0.02562 * 21 20 19 23 23 C 1.38898 * 119.87728 * 0.02562 * 20 19 18 24 24 F 1.35104 * 120.05030 * 179.97438 * 23 20 19 25 25 C 1.38261 * 119.94039 * 319.97677 * 17 14 13 26 26 H 1.08995 * 109.47616 * 303.86735 * 1 2 3 27 27 H 1.09004 * 109.46983 * 63.86256 * 1 2 3 28 28 H 1.09000 * 109.47134 * 183.85822 * 1 2 3 29 29 H 1.08998 * 109.47196 * 239.99430 * 2 1 3 30 30 H 1.09002 * 109.46573 * 119.99356 * 2 1 3 31 31 H 0.96995 * 120.00865 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00255 * 81.43318 * 13 3 2 33 33 H 1.08994 * 109.47395 * 183.72192 * 16 14 13 34 34 H 1.09003 * 109.47183 * 303.72335 * 16 14 13 35 35 H 1.09008 * 109.47162 * 63.71954 * 16 14 13 36 36 H 1.07994 * 119.94961 * 0.02562 * 18 17 14 37 37 H 1.07991 * 120.01515 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47003 * 59.99838 * 22 21 20 39 39 H 1.08999 * 109.47024 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.46894 * 300.00282 * 22 21 20 41 41 H 1.07999 * 119.98211 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9818 -0.8413 5 6 3.5418 1.4444 -0.1251 6 1 4.1477 1.8887 0.6506 7 6 4.1421 0.8788 -1.2299 8 7 3.4043 0.3381 -2.1748 9 14 6.0037 0.8816 -1.3854 10 1 6.5973 0.1473 -0.2391 11 1 6.3955 0.2185 -2.6550 12 1 6.4982 2.2819 -1.3857 13 7 1.6524 2.0989 1.2557 14 6 1.5646 3.5552 1.0832 15 1 2.3160 3.8818 0.3643 16 6 0.1719 3.9247 0.5688 17 6 1.8074 4.2333 2.4069 18 6 2.5625 5.3903 2.4612 19 6 2.7877 6.0145 3.6733 20 6 2.2553 5.4804 4.8369 21 8 2.4803 6.0899 6.0312 22 6 3.2741 7.2781 6.0138 23 6 1.4969 4.3181 4.7809 24 9 0.9769 3.7943 5.9126 25 6 1.2743 3.6977 3.5647 26 1 -0.3634 0.5726 0.8532 27 1 -0.3633 0.4527 -0.9226 28 1 -0.3633 -1.0253 0.0691 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8266 -0.0595 -2.9523 32 1 2.2906 1.8608 2.0001 33 1 0.1278 4.9969 0.3780 34 1 -0.0298 3.3826 -0.3551 35 1 -0.5745 3.6577 1.3170 36 1 2.9769 5.8067 1.5551 37 1 3.3780 6.9179 3.7142 38 1 2.7908 8.0287 5.3883 39 1 3.3763 7.6616 7.0289 40 1 4.2609 7.0500 5.6108 41 1 0.6849 2.7939 3.5197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -83.749187 kcal Electronic energy + Delta-G solvation = -22292.887984 eV Core-core repulsion = 18893.554743 eV Total energy + Delta-G solvation = -3399.333241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.80479 -41.08931 -39.35334 -37.62290 -34.99591 -33.36885 -31.71936 -31.03780 -29.82627 -28.08657 -27.83295 -24.89969 -23.96408 -23.61281 -21.48046 -21.13627 -19.29356 -18.66029 -17.87260 -17.77502 -17.12629 -16.71086 -16.27088 -16.02512 -15.77171 -15.46900 -15.19088 -15.03715 -14.60017 -14.21487 -13.94951 -13.74007 -13.37197 -13.22173 -13.06920 -13.03549 -12.86351 -12.81619 -12.48440 -12.43633 -12.12770 -11.99301 -11.95793 -11.72657 -11.46187 -11.30675 -10.93676 -10.41609 -9.90269 -9.11031 -9.03601 -8.02473 -6.24005 0.14553 0.23904 1.39629 1.41325 1.47962 2.21340 2.41876 2.56070 3.17556 3.22249 3.60756 3.71402 3.84967 4.11033 4.30554 4.39447 4.40302 4.53560 4.61334 4.65507 4.70659 4.74197 4.82324 4.85394 4.95259 5.00615 5.04902 5.13779 5.20929 5.25409 5.41228 5.47096 5.52439 5.59778 5.67155 5.71064 5.83432 6.14949 6.24514 6.30797 6.43621 6.85410 7.04446 7.47361 8.93690 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.004719 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.072882 B = 5932.374175 C = 6766.025197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.225 3.775 4 H 0.007 0.993 5 C -0.557 4.557 6 H 0.048 0.952 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.672 5.672 14 C 0.131 3.869 15 H 0.037 0.963 16 C -0.124 4.124 17 C -0.091 4.091 18 C -0.083 4.083 19 C -0.172 4.172 20 C 0.084 3.916 21 O -0.334 6.334 22 C 0.016 3.984 23 C 0.042 3.958 24 F -0.147 7.147 25 C -0.098 4.098 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.328 0.672 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.146 0.854 37 H 0.168 0.832 38 H 0.072 0.928 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 13.432 11.401 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.025 0.975 5 C -0.596 4.596 6 H 0.066 0.934 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.302 5.302 14 C 0.021 3.979 15 H 0.055 0.945 16 C -0.181 4.181 17 C -0.092 4.092 18 C -0.102 4.102 19 C -0.190 4.190 20 C 0.038 3.962 21 O -0.248 6.248 22 C -0.078 4.078 23 C 0.022 3.978 24 F -0.125 7.125 25 C -0.117 4.117 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.163 0.837 37 H 0.185 0.815 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.718 13.173 11.354 17.602 hybrid contribution 2.027 -0.126 -0.392 2.068 sum -0.691 13.047 10.962 17.055 Atomic orbital electron populations 1.21570 0.96423 0.99760 1.00530 1.21362 0.94397 0.98587 0.99829 1.18917 0.91331 0.91391 0.86730 0.97509 1.22139 0.94173 1.37980 1.05347 0.93391 1.25595 1.01652 0.94859 0.95586 1.69989 1.36304 1.38825 1.09739 0.85823 0.81590 0.78238 0.77218 1.20120 1.21038 1.19873 1.60998 1.54636 1.06176 1.08373 1.20271 0.97479 0.88424 0.91771 0.94469 1.21702 0.95342 1.00553 1.00548 1.19837 0.98576 0.96389 0.94391 1.21186 0.96307 0.94166 0.98537 1.21332 1.04128 1.03211 0.90371 1.19097 0.97553 0.92817 0.86739 1.86098 1.69586 1.42044 1.27043 1.23436 0.94492 0.83989 1.05868 1.17198 1.02637 0.94938 0.82979 1.91441 1.85346 1.86239 1.49522 1.20886 1.00654 1.00658 0.89515 0.92119 0.95017 0.93953 0.92194 0.95652 0.92959 0.85540 0.91453 0.93883 0.92071 0.83667 0.81466 0.90975 0.86165 0.91434 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.85 71.98 0.71 -4.28 16 2 C -0.10 -4.88 5.45 30.60 0.17 -4.72 16 3 C 0.23 10.83 1.77 44.17 0.08 10.90 16 4 H 0.01 0.37 7.19 -2.39 -0.02 0.36 16 5 C -0.56 -29.45 8.29 25.60 0.21 -29.23 16 6 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -51.16 11.29 21.45 0.24 -50.92 16 9 Si 0.94 42.75 29.54 68.60 2.03 44.78 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 N -0.67 -26.73 4.84 -477.16 -2.31 -29.04 16 14 C 0.13 4.54 2.62 44.16 0.12 4.66 16 15 H 0.04 1.47 7.50 -2.39 -0.02 1.45 16 16 C -0.12 -3.85 9.40 71.98 0.68 -3.18 16 17 C -0.09 -2.73 4.71 -19.85 -0.09 -2.82 16 18 C -0.08 -2.11 9.66 22.26 0.22 -1.90 16 19 C -0.17 -3.80 9.04 22.36 0.20 -3.60 16 20 C 0.08 2.22 6.69 22.53 0.15 2.37 16 21 O -0.33 -8.05 10.36 -93.06 -0.96 -9.02 16 22 C 0.02 0.21 9.81 113.37 1.11 1.32 16 23 C 0.04 1.27 7.31 22.45 0.16 1.44 16 24 F -0.15 -4.74 17.11 44.97 0.77 -3.97 16 25 C -0.10 -2.96 8.95 22.30 0.20 -2.76 16 26 H 0.06 2.28 7.65 -2.39 -0.02 2.26 16 27 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 3.22 5.95 -2.39 -0.01 3.20 16 30 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.33 13.32 7.62 -89.69 -0.68 12.64 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.49 7.48 -2.39 -0.02 1.47 16 35 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.15 3.23 8.03 -2.91 -0.02 3.20 16 37 H 0.17 2.48 6.30 -2.92 -0.02 2.46 16 38 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 39 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.76 7.67 -2.38 -0.02 0.74 16 41 H 0.15 4.45 7.71 -2.91 -0.02 4.43 16 Total: -1.00 -60.47 338.98 4.46 -56.01 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.34 Total: 22.25 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 4.36 Total: -30.10 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.07 Total: -79.96 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.96 Total: -9.02 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.77 Total: -3.97 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -60.47 4.46 -56.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.744 kcal (2) G-P(sol) polarization free energy of solvation -60.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds