Wall clock time and date at job start Tue Mar 31 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46834 * 2 1 4 4 H 1.09000 * 109.47142 * 179.49817 * 3 2 1 5 5 C 1.50700 * 109.47332 * 299.49715 * 3 2 1 6 6 H 1.07999 * 120.00474 * 119.99716 * 5 3 2 7 7 C 1.37881 * 119.99521 * 300.00597 * 5 3 2 8 8 N 1.31514 * 120.00383 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99526 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47536 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47132 * 119.99842 * 9 7 5 12 12 H 1.48505 * 109.47312 * 239.99546 * 9 7 5 13 13 N 1.46904 * 109.47462 * 59.49994 * 3 2 1 14 14 C 1.46900 * 110.99973 * 85.94124 * 13 3 2 15 15 H 1.08996 * 109.47062 * 327.27475 * 14 13 3 16 16 C 1.53001 * 109.46686 * 87.27558 * 14 13 3 17 17 C 1.50697 * 109.46914 * 207.27216 * 14 13 3 18 18 C 1.38250 * 119.96152 * 340.02557 * 17 14 13 19 19 C 1.38131 * 120.08384 * 180.02562 * 18 17 14 20 20 C 1.38771 * 119.99258 * 0.02562 * 19 18 17 21 21 O 1.35901 * 120.04128 * 180.02562 * 20 19 18 22 22 C 1.42902 * 116.99675 * 359.95605 * 21 20 19 23 23 C 1.38667 * 119.91563 * 359.95876 * 20 19 18 24 24 C 1.38384 * 119.91797 * 0.02562 * 23 20 19 25 25 F 1.35106 * 119.99387 * 179.97438 * 24 23 20 26 26 H 1.09006 * 109.47502 * 296.20579 * 1 2 3 27 27 H 1.09001 * 109.47596 * 56.21074 * 1 2 3 28 28 H 1.09000 * 109.47314 * 176.20863 * 1 2 3 29 29 H 1.08992 * 109.47546 * 240.00024 * 2 1 3 30 30 H 1.09002 * 109.46935 * 119.99409 * 2 1 3 31 31 H 0.96996 * 119.99592 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99478 * 209.89823 * 13 3 2 33 33 H 1.09000 * 109.46900 * 179.97438 * 16 14 13 34 34 H 1.09000 * 109.47317 * 299.99346 * 16 14 13 35 35 H 1.09003 * 109.47179 * 59.99911 * 16 14 13 36 36 H 1.08004 * 119.96004 * 359.97438 * 18 17 14 37 37 H 1.08002 * 120.00457 * 179.97438 * 19 18 17 38 38 H 1.08989 * 109.47443 * 299.99681 * 22 21 20 39 39 H 1.09000 * 109.46925 * 60.00626 * 22 21 20 40 40 H 1.09005 * 109.46605 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.04002 * 180.28852 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0090 5 6 1.5478 2.1493 -1.2366 6 1 0.9260 3.0277 -1.1453 7 6 1.8912 1.6745 -2.4847 8 7 2.6486 0.6051 -2.5960 9 14 1.2806 2.5502 -4.0176 10 1 0.4514 3.7175 -3.6238 11 1 2.4419 3.0149 -4.8180 12 1 0.4625 1.6141 -4.8298 13 7 1.5404 2.1386 1.1933 14 6 2.4267 1.9143 2.3432 15 1 2.8665 0.9194 2.2743 16 6 3.5390 2.9649 2.3421 17 6 1.6322 2.0252 3.6189 18 6 0.4191 2.6882 3.6214 19 6 -0.3110 2.7918 4.7894 20 6 0.1734 2.2304 5.9624 21 8 -0.5443 2.3312 7.1120 22 6 -1.7888 3.0300 7.0406 23 6 1.3901 1.5651 5.9596 24 6 2.1184 1.4632 4.7873 25 9 3.3042 0.8157 4.7830 26 1 -0.3634 0.4538 0.9221 27 1 -0.3634 0.5715 -0.8541 28 1 -0.3634 -1.0254 -0.0680 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.8904 0.2714 -3.4740 32 1 1.4229 3.1245 1.0141 33 1 4.1964 2.7989 3.1955 34 1 4.1137 2.8848 1.4194 35 1 3.0991 3.9599 2.4110 36 1 0.0421 3.1265 2.7091 37 1 -1.2584 3.3104 4.7900 38 1 -1.6118 4.0549 6.7150 39 1 -2.4455 2.5306 6.3282 40 1 -2.2585 3.0368 8.0242 41 1 1.7668 1.1233 6.8703 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:10 Heat of formation + Delta-G solvation = -64.369104 kcal Electronic energy + Delta-G solvation = -22461.830031 eV Core-core repulsion = 19063.337173 eV Total energy + Delta-G solvation = -3398.492858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.71315 -40.07004 -37.97861 -36.20363 -33.56515 -31.29113 -30.69999 -29.57071 -28.15948 -27.25664 -25.81773 -23.32269 -23.28154 -22.23941 -20.51399 -18.86658 -18.41836 -16.86663 -16.55891 -15.93728 -15.89288 -15.36002 -15.21332 -14.92855 -14.53410 -13.95621 -13.79334 -13.48374 -13.01169 -12.86385 -12.67921 -12.36075 -12.24777 -12.19928 -11.96296 -11.75339 -11.45612 -10.99036 -10.93975 -10.80401 -10.65345 -10.51964 -10.31542 -10.04700 -9.72635 -9.38169 -8.77952 -8.73862 -8.49104 -8.00987 -7.28786 -6.03047 -4.08637 1.28181 1.45637 3.08294 3.27135 3.35809 3.38566 3.72964 4.38260 4.56056 4.78762 4.88587 4.99109 5.01486 5.07288 5.26732 5.28291 5.34726 5.44533 5.61652 5.68722 5.81032 5.99480 6.14083 6.28554 6.34809 6.44198 6.53371 6.59444 6.67512 6.71256 6.84104 6.87959 7.25878 7.30858 7.34048 7.49425 7.73331 7.78301 7.84302 8.25148 8.36787 8.63528 9.00551 9.56272 11.02848 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.004289 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.884440 B = 6527.035907 C = 6977.763998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.003 0.997 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.677 5.677 14 C 0.124 3.876 15 H 0.083 0.917 16 C -0.171 4.171 17 C -0.123 4.123 18 C -0.026 4.026 19 C -0.220 4.220 20 C 0.140 3.860 21 O -0.319 6.319 22 C 0.028 3.972 23 C -0.194 4.194 24 C 0.133 3.867 25 F -0.135 7.135 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.012 0.988 29 H 0.087 0.913 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.146 0.854 37 H 0.130 0.870 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 4.529 15.746 17.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.021 0.979 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.307 5.307 14 C 0.013 3.987 15 H 0.101 0.899 16 C -0.230 4.230 17 C -0.125 4.125 18 C -0.044 4.044 19 C -0.239 4.239 20 C 0.094 3.906 21 O -0.232 6.232 22 C -0.067 4.067 23 C -0.214 4.214 24 C 0.113 3.887 25 F -0.113 7.113 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.105 0.895 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.353 3.802 15.945 17.244 hybrid contribution 0.470 0.880 -1.218 1.574 sum -4.883 4.682 14.727 16.206 Atomic orbital electron populations 1.21439 0.97559 0.97369 1.01246 1.21447 0.95010 0.98307 0.99444 1.19140 0.93101 0.91332 0.85428 0.97891 1.21198 1.31605 1.11935 0.90294 0.92269 1.24880 0.95045 0.94980 0.98914 1.69894 1.36503 1.22662 1.23555 0.86540 0.78534 0.79664 0.83241 1.19805 1.21189 1.21053 1.60774 1.48255 1.15871 1.05838 1.20252 0.90506 0.99241 0.88717 0.89899 1.22424 0.99268 0.99173 1.02101 1.20075 0.97415 1.00714 0.94249 1.20784 0.91866 0.94337 0.97407 1.21309 1.02718 1.07084 0.92823 1.18545 0.91139 0.95582 0.85284 1.86027 1.33358 1.72919 1.30934 1.23050 0.83755 0.96191 1.03690 1.20068 0.95426 1.07442 0.98428 1.17154 0.82383 0.95486 0.93649 1.91487 1.43692 1.79002 1.97139 0.93952 0.92578 0.96881 0.89510 0.97233 0.93008 0.85069 0.93073 0.91660 0.92762 0.83670 0.85245 0.92559 0.92451 0.88407 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.52 37.16 0.35 -2.29 16 2 C -0.10 -2.49 5.57 -26.73 -0.15 -2.64 16 3 C 0.22 5.19 2.10 -68.86 -0.14 5.05 16 4 H 0.00 0.09 7.28 -51.93 -0.38 -0.29 16 5 C -0.51 -13.21 7.29 -34.44 -0.25 -13.47 16 6 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 9 Si 0.89 20.74 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.68 -13.34 4.12 -102.17 -0.42 -13.76 16 14 C 0.12 2.21 2.32 -68.87 -0.16 2.05 16 15 H 0.08 1.65 6.99 -51.93 -0.36 1.29 16 16 C -0.17 -2.78 9.13 37.16 0.34 -2.44 16 17 C -0.12 -1.97 5.09 -104.53 -0.53 -2.50 16 18 C -0.03 -0.37 9.32 -39.62 -0.37 -0.74 16 19 C -0.22 -2.80 9.04 -39.42 -0.36 -3.15 16 20 C 0.14 1.85 6.68 -39.23 -0.26 1.58 16 21 O -0.32 -3.77 10.50 -19.43 -0.20 -3.97 16 22 C 0.03 0.22 9.81 101.05 0.99 1.21 16 23 C -0.19 -2.72 9.97 -39.37 -0.39 -3.11 16 24 C 0.13 2.07 7.24 -39.44 -0.29 1.79 16 25 F -0.13 -2.18 16.66 2.25 0.04 -2.14 16 26 H 0.04 0.89 7.71 -51.93 -0.40 0.49 16 27 H 0.06 1.33 7.10 -51.93 -0.37 0.96 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 30 H 0.01 0.21 7.53 -51.93 -0.39 -0.18 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.33 6.32 7.55 -39.29 -0.30 6.02 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.15 7.61 -51.93 -0.40 0.76 16 35 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 36 H 0.15 2.08 6.90 -52.48 -0.36 1.72 16 37 H 0.13 1.31 6.30 -52.49 -0.33 0.98 16 38 H 0.06 0.38 7.66 -51.94 -0.40 -0.02 16 39 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -27.90 334.71 -7.29 -35.19 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.04 Total: 5.07 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.31 Total: -17.07 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.21 Total: -37.84 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.20 Total: -3.97 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.90 -7.29 -35.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.174 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds