Wall clock time and date at job start Tue Mar 31 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46834 * 2 1 4 4 H 1.09000 * 109.47142 * 179.49817 * 3 2 1 5 5 C 1.50700 * 109.47332 * 299.49715 * 3 2 1 6 6 H 1.07999 * 120.00474 * 119.99716 * 5 3 2 7 7 C 1.37881 * 119.99521 * 300.00597 * 5 3 2 8 8 N 1.31514 * 120.00383 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99526 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47536 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47132 * 119.99842 * 9 7 5 12 12 H 1.48505 * 109.47312 * 239.99546 * 9 7 5 13 13 N 1.46904 * 109.47462 * 59.49994 * 3 2 1 14 14 C 1.46900 * 110.99973 * 85.94124 * 13 3 2 15 15 H 1.08996 * 109.47062 * 327.27475 * 14 13 3 16 16 C 1.53001 * 109.46686 * 87.27558 * 14 13 3 17 17 C 1.50697 * 109.46914 * 207.27216 * 14 13 3 18 18 C 1.38250 * 119.96152 * 340.02557 * 17 14 13 19 19 C 1.38131 * 120.08384 * 180.02562 * 18 17 14 20 20 C 1.38771 * 119.99258 * 0.02562 * 19 18 17 21 21 O 1.35901 * 120.04128 * 180.02562 * 20 19 18 22 22 C 1.42902 * 116.99675 * 359.95605 * 21 20 19 23 23 C 1.38667 * 119.91563 * 359.95876 * 20 19 18 24 24 C 1.38384 * 119.91797 * 0.02562 * 23 20 19 25 25 F 1.35106 * 119.99387 * 179.97438 * 24 23 20 26 26 H 1.09006 * 109.47502 * 296.20579 * 1 2 3 27 27 H 1.09001 * 109.47596 * 56.21074 * 1 2 3 28 28 H 1.09000 * 109.47314 * 176.20863 * 1 2 3 29 29 H 1.08992 * 109.47546 * 240.00024 * 2 1 3 30 30 H 1.09002 * 109.46935 * 119.99409 * 2 1 3 31 31 H 0.96996 * 119.99592 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99478 * 209.89823 * 13 3 2 33 33 H 1.09000 * 109.46900 * 179.97438 * 16 14 13 34 34 H 1.09000 * 109.47317 * 299.99346 * 16 14 13 35 35 H 1.09003 * 109.47179 * 59.99911 * 16 14 13 36 36 H 1.08004 * 119.96004 * 359.97438 * 18 17 14 37 37 H 1.08002 * 120.00457 * 179.97438 * 19 18 17 38 38 H 1.08989 * 109.47443 * 299.99681 * 22 21 20 39 39 H 1.09000 * 109.46925 * 60.00626 * 22 21 20 40 40 H 1.09005 * 109.46605 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.04002 * 180.28852 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0090 5 6 1.5478 2.1493 -1.2366 6 1 0.9260 3.0277 -1.1453 7 6 1.8912 1.6745 -2.4847 8 7 2.6486 0.6051 -2.5960 9 14 1.2806 2.5502 -4.0176 10 1 0.4514 3.7175 -3.6238 11 1 2.4419 3.0149 -4.8180 12 1 0.4625 1.6141 -4.8298 13 7 1.5404 2.1386 1.1933 14 6 2.4267 1.9143 2.3432 15 1 2.8665 0.9194 2.2743 16 6 3.5390 2.9649 2.3421 17 6 1.6322 2.0252 3.6189 18 6 0.4191 2.6882 3.6214 19 6 -0.3110 2.7918 4.7894 20 6 0.1734 2.2304 5.9624 21 8 -0.5443 2.3312 7.1120 22 6 -1.7888 3.0300 7.0406 23 6 1.3901 1.5651 5.9596 24 6 2.1184 1.4632 4.7873 25 9 3.3042 0.8157 4.7830 26 1 -0.3634 0.4538 0.9221 27 1 -0.3634 0.5715 -0.8541 28 1 -0.3634 -1.0254 -0.0680 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.8904 0.2714 -3.4740 32 1 1.4229 3.1245 1.0141 33 1 4.1964 2.7989 3.1955 34 1 4.1137 2.8848 1.4194 35 1 3.0991 3.9599 2.4110 36 1 0.0421 3.1265 2.7091 37 1 -1.2584 3.3104 4.7900 38 1 -1.6118 4.0549 6.7150 39 1 -2.4455 2.5306 6.3282 40 1 -2.2585 3.0368 8.0242 41 1 1.7668 1.1233 6.8703 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:10 Heat of formation + Delta-G solvation = -79.406955 kcal Electronic energy + Delta-G solvation = -22462.482121 eV Core-core repulsion = 19063.337173 eV Total energy + Delta-G solvation = -3399.144948 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.92875 -41.06898 -39.25003 -37.65987 -35.24047 -33.17324 -31.77812 -31.00341 -29.49412 -28.07897 -27.67538 -25.16312 -24.50625 -23.44057 -21.89075 -20.63562 -19.44270 -18.48421 -17.85006 -16.98573 -16.97544 -16.81403 -16.51871 -16.31361 -15.74809 -15.58479 -15.24152 -14.89997 -14.63797 -14.28271 -13.86222 -13.75964 -13.60916 -13.50415 -13.24360 -13.10167 -12.84045 -12.76234 -12.51492 -12.32497 -12.05498 -11.93797 -11.80404 -11.66927 -11.49639 -11.30249 -10.75307 -10.51989 -9.83307 -9.13953 -8.95434 -8.06584 -6.18394 0.18054 0.35190 1.43036 1.46182 1.56124 2.23614 2.44857 2.62714 3.22777 3.42815 3.52181 3.83830 3.92014 4.07913 4.27315 4.28331 4.35295 4.47024 4.50529 4.54408 4.65518 4.72500 4.80378 4.81104 4.90032 4.97924 5.07343 5.11464 5.20740 5.32704 5.36648 5.42074 5.54446 5.61107 5.74523 5.75614 5.83778 5.92171 6.30379 6.39327 6.52041 6.82130 7.07859 7.50549 8.98961 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.004289 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.884440 B = 6527.035907 C = 6977.763998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.100 4.100 3 C 0.226 3.774 4 H -0.034 1.034 5 C -0.517 4.517 6 H 0.063 0.937 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.954 3.046 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.665 5.665 14 C 0.129 3.871 15 H 0.054 0.946 16 C -0.162 4.162 17 C -0.140 4.140 18 C -0.030 4.030 19 C -0.210 4.210 20 C 0.145 3.855 21 O -0.329 6.329 22 C 0.016 3.984 23 C -0.198 4.198 24 C 0.119 3.881 25 F -0.145 7.145 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.010 0.990 31 H 0.259 0.741 32 H 0.337 0.663 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.121 0.879 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 5.957 17.063 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C 0.117 3.883 4 H -0.016 1.016 5 C -0.555 4.555 6 H 0.081 0.919 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.296 5.296 14 C 0.018 3.982 15 H 0.072 0.928 16 C -0.221 4.221 17 C -0.142 4.142 18 C -0.048 4.048 19 C -0.228 4.228 20 C 0.099 3.901 21 O -0.242 6.242 22 C -0.078 4.078 23 C -0.218 4.218 24 C 0.099 3.901 25 F -0.123 7.123 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.165 0.835 37 H 0.178 0.822 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.522 5.248 17.287 19.570 hybrid contribution 1.093 0.445 -1.485 1.897 sum -6.429 5.693 15.802 17.985 Atomic orbital electron populations 1.21291 0.95750 0.98182 1.01050 1.21333 0.96491 0.98090 0.97974 1.18874 0.90868 0.91743 0.86786 1.01610 1.21472 1.31138 1.11911 0.91018 0.91886 1.25628 0.95286 0.95613 1.01805 1.70040 1.37745 1.24064 1.24003 0.85567 0.77925 0.78781 0.79696 1.18693 1.21245 1.21115 1.60668 1.48335 1.15875 1.04686 1.20123 0.90939 0.98146 0.89016 0.92773 1.22320 0.98830 0.99571 1.01389 1.19881 0.98289 1.02725 0.93264 1.20837 0.91385 0.94277 0.98309 1.21557 1.03368 1.06198 0.91720 1.18631 0.90842 0.94586 0.86006 1.86035 1.34758 1.73281 1.30174 1.23414 0.82193 0.96525 1.05647 1.20224 0.95803 1.07510 0.98229 1.17290 0.82491 0.96089 0.94213 1.91457 1.44342 1.79330 1.97220 0.92741 0.94124 0.95392 0.92486 0.97161 0.93185 0.84465 0.92058 0.93769 0.91127 0.83530 0.82214 0.91285 0.91612 0.86036 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.52 71.98 0.69 -3.94 16 2 C -0.10 -4.93 5.57 30.59 0.17 -4.76 16 3 C 0.23 11.06 2.10 44.17 0.09 11.15 16 4 H -0.03 -1.87 7.28 -2.39 -0.02 -1.89 16 5 C -0.52 -26.85 7.29 25.60 0.19 -26.66 16 6 H 0.06 3.17 7.60 -2.91 -0.02 3.15 16 7 C 0.02 0.84 5.30 84.66 0.45 1.29 16 8 N -0.92 -52.41 11.32 21.45 0.24 -52.17 16 9 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.67 -26.30 4.12 -477.16 -1.97 -28.27 16 14 C 0.13 4.66 2.32 44.17 0.10 4.76 16 15 H 0.05 2.26 6.99 -2.39 -0.02 2.24 16 16 C -0.16 -5.35 9.13 71.98 0.66 -4.70 16 17 C -0.14 -4.40 5.09 -19.81 -0.10 -4.50 16 18 C -0.03 -0.81 9.32 22.25 0.21 -0.60 16 19 C -0.21 -4.68 9.04 22.37 0.20 -4.48 16 20 C 0.15 3.45 6.68 22.50 0.15 3.60 16 21 O -0.33 -6.73 10.50 -92.43 -0.97 -7.70 16 22 C 0.02 0.19 9.81 113.37 1.11 1.30 16 23 C -0.20 -5.25 9.97 22.41 0.22 -5.03 16 24 C 0.12 3.64 7.24 22.36 0.16 3.80 16 25 F -0.14 -4.74 16.66 44.97 0.75 -3.99 16 26 H 0.05 2.23 7.71 -2.38 -0.02 2.21 16 27 H 0.04 1.89 7.10 -2.39 -0.02 1.87 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 3.16 6.06 -2.39 -0.01 3.15 16 30 H 0.01 0.47 7.53 -2.39 -0.02 0.45 16 31 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.34 12.67 7.55 -89.69 -0.68 11.99 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.62 7.61 -2.39 -0.02 1.60 16 35 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 36 H 0.15 3.90 6.90 -2.91 -0.02 3.88 16 37 H 0.16 2.53 6.30 -2.91 -0.02 2.52 16 38 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 39 H 0.07 0.67 7.66 -2.39 -0.02 0.66 16 40 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -60.44 334.71 4.74 -55.70 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.36 Total: 20.61 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 4.30 Total: -28.77 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.72 Total: -80.43 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.97 Total: -7.70 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.75 Total: -3.99 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -60.44 4.74 -55.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.706 kcal (2) G-P(sol) polarization free energy of solvation -60.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds