Wall clock time and date at job start Tue Mar 31 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 H 1.09006 * 109.46858 * 304.14630 * 3 2 1 5 5 C 1.50704 * 109.46767 * 184.14952 * 3 2 1 6 6 H 1.07995 * 119.99827 * 244.22112 * 5 3 2 7 7 C 1.37876 * 119.99942 * 64.22605 * 5 3 2 8 8 N 1.31517 * 120.00045 * 7.64576 * 7 5 3 9 9 Si 1.86804 * 120.00095 * 187.63931 * 7 5 3 10 10 H 1.48499 * 109.46646 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47002 * 119.99788 * 9 7 5 12 12 H 1.48496 * 109.47113 * 240.00228 * 9 7 5 13 13 N 1.46896 * 109.47204 * 64.14906 * 3 2 1 14 14 C 1.46901 * 110.99796 * 205.84509 * 13 3 2 15 15 H 1.09002 * 109.47071 * 322.46151 * 14 13 3 16 16 C 1.53003 * 109.46964 * 82.45710 * 14 13 3 17 17 C 1.50695 * 109.47539 * 202.45645 * 14 13 3 18 18 C 1.38259 * 119.95446 * 339.72978 * 17 14 13 19 19 C 1.38130 * 120.07823 * 179.72288 * 18 17 14 20 20 C 1.38770 * 119.99553 * 0.54776 * 19 18 17 21 21 O 1.35901 * 120.04377 * 179.74071 * 20 19 18 22 22 C 1.42903 * 116.99811 * 359.97438 * 21 20 19 23 23 C 1.38673 * 119.91378 * 359.72788 * 20 19 18 24 24 C 1.38378 * 119.91950 * 359.97438 * 23 20 19 25 25 F 1.35100 * 119.99598 * 180.02562 * 24 23 20 26 26 H 1.09003 * 109.47239 * 304.24289 * 1 2 3 27 27 H 1.09000 * 109.47154 * 64.23799 * 1 2 3 28 28 H 1.08997 * 109.47214 * 184.23941 * 1 2 3 29 29 H 1.08993 * 109.47205 * 239.99483 * 2 1 3 30 30 H 1.09000 * 109.46836 * 119.99155 * 2 1 3 31 31 H 0.97002 * 120.00133 * 4.66757 * 8 7 5 32 32 H 1.00899 * 110.99939 * 81.89846 * 13 3 2 33 33 H 1.09002 * 109.47406 * 184.57629 * 16 14 13 34 34 H 1.09006 * 109.47278 * 304.57294 * 16 14 13 35 35 H 1.08996 * 109.47185 * 64.57171 * 16 14 13 36 36 H 1.08002 * 119.95904 * 359.97438 * 18 17 14 37 37 H 1.08005 * 120.00307 * 180.24447 * 19 18 17 38 38 H 1.08998 * 109.46676 * 179.97438 * 22 21 20 39 39 H 1.08991 * 109.47218 * 299.99660 * 22 21 20 40 40 H 1.08999 * 109.47188 * 59.99504 * 22 21 20 41 41 H 1.08001 * 120.03634 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6172 1.9774 -0.8506 5 6 3.5435 1.4437 -0.1028 6 1 4.1400 1.8305 0.7102 7 6 4.1575 0.9512 -1.2348 8 7 3.4357 0.6204 -2.2833 9 14 6.0145 0.7538 -1.2794 10 1 6.5901 1.1931 0.0171 11 1 6.3552 -0.6725 -1.5138 12 1 6.5743 1.5833 -2.3765 13 7 1.6339 2.1055 1.2464 14 6 1.5381 3.5598 1.0620 15 1 2.3366 3.8955 0.4004 16 6 0.1828 3.9071 0.4427 17 6 1.6705 4.2453 2.3975 18 6 1.4325 3.5396 3.5623 19 6 1.5587 4.1639 4.7880 20 6 1.9137 5.5039 4.8507 21 8 2.0330 6.1205 6.0559 22 6 1.7778 5.3287 7.2178 23 6 2.1468 6.2130 3.6820 24 6 2.0253 5.5825 2.4563 25 9 2.2526 6.2717 1.3167 26 1 -0.3634 0.5783 0.8495 27 1 -0.3633 0.4467 -0.9255 28 1 -0.3633 -1.0248 0.0760 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.4799 0.7858 -2.2859 32 1 2.2652 1.8774 1.9996 33 1 0.1432 4.9756 0.2308 34 1 0.0528 3.3480 -0.4840 35 1 -0.6131 3.6451 1.1397 36 1 1.1515 2.4979 3.5140 37 1 1.3764 3.6104 5.6973 38 1 1.9082 5.9406 8.1103 39 1 0.7563 4.9502 7.1824 40 1 2.4747 4.4911 7.2470 41 1 2.4236 7.2559 3.7286 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:12 Heat of formation + Delta-G solvation = -69.969796 kcal Electronic energy + Delta-G solvation = -22486.721909 eV Core-core repulsion = 19087.986187 eV Total energy + Delta-G solvation = -3398.735722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.73909 -40.15552 -38.06959 -36.30054 -33.64604 -31.49062 -30.79275 -29.71299 -28.45560 -27.34237 -25.52417 -23.37218 -23.00479 -22.17457 -20.16596 -19.66914 -18.48010 -17.15307 -16.84220 -16.01444 -15.98815 -15.64632 -15.30980 -14.73122 -14.55582 -14.00276 -13.76829 -13.60794 -13.04904 -12.87894 -12.70934 -12.47796 -12.33652 -12.19920 -12.03555 -11.85123 -11.29386 -11.15747 -10.90176 -10.81241 -10.74397 -10.59978 -10.31755 -10.16537 -9.79061 -9.70692 -8.91066 -8.81943 -8.32180 -8.09078 -7.35439 -6.34034 -4.11570 1.20089 1.35216 3.02213 3.42517 3.44679 3.58291 3.63738 4.49449 4.51071 4.71600 4.82532 4.94260 4.94791 4.98419 5.17978 5.24099 5.33338 5.37996 5.51029 5.84638 5.95388 6.06261 6.08409 6.18153 6.22996 6.27063 6.35526 6.41099 6.48335 6.62649 6.67147 6.79822 6.85172 6.93333 7.17560 7.24502 7.32938 7.55678 7.92800 8.04632 8.41830 8.57239 8.81667 9.60900 10.98701 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.004786 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.875462 B = 5849.453041 C = 6219.636040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C 0.202 3.798 4 H 0.027 0.973 5 C -0.626 4.626 6 H 0.048 0.952 7 C 0.028 3.972 8 N -0.907 5.907 9 Si 1.064 2.936 10 H -0.291 1.291 11 H -0.286 1.286 12 H -0.288 1.288 13 N -0.676 5.676 14 C 0.130 3.870 15 H 0.060 0.940 16 C -0.129 4.129 17 C -0.137 4.137 18 C -0.040 4.040 19 C -0.218 4.218 20 C 0.142 3.858 21 O -0.318 6.318 22 C 0.028 3.972 23 C -0.192 4.192 24 C 0.140 3.860 25 F -0.131 7.131 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.028 0.972 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.273 0.727 32 H 0.331 0.669 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 7.696 15.050 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C 0.093 3.907 4 H 0.045 0.955 5 C -0.665 4.665 6 H 0.066 0.934 7 C -0.177 4.177 8 N -0.543 5.543 9 Si 0.893 3.107 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.215 1.215 13 N -0.307 5.307 14 C 0.020 3.980 15 H 0.078 0.922 16 C -0.187 4.187 17 C -0.139 4.139 18 C -0.058 4.058 19 C -0.237 4.237 20 C 0.097 3.903 21 O -0.231 6.231 22 C -0.067 4.067 23 C -0.211 4.211 24 C 0.120 3.880 25 F -0.109 7.109 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.165 0.835 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.834 7.263 13.997 16.494 hybrid contribution -0.187 0.705 0.829 1.104 sum -5.021 7.968 14.826 17.565 Atomic orbital electron populations 1.21729 0.98280 0.98948 1.00841 1.21531 0.92846 0.99347 1.00921 1.19278 0.93685 0.90571 0.87125 0.95509 1.22650 0.92240 1.46506 1.05126 0.93415 1.25661 1.06453 0.93398 0.92211 1.70728 1.09178 1.44345 1.30025 0.83622 0.74948 0.76827 0.75260 1.21705 1.21226 1.21493 1.61006 1.55071 1.05020 1.09598 1.20146 0.97698 0.89629 0.90574 0.92209 1.21724 0.96271 0.99787 1.00878 1.20193 1.03566 0.92411 0.97696 1.20841 0.94506 1.00634 0.89830 1.21285 1.09010 0.93997 0.99404 1.18551 0.95844 0.90971 0.84934 1.86037 1.85201 1.39376 1.12490 1.23064 1.00982 0.96677 0.86005 1.20114 1.10487 1.01556 0.88987 1.17141 0.99750 0.89735 0.81378 1.91506 1.91878 1.79178 1.48379 0.92468 0.94482 0.95277 0.91808 0.93983 0.91577 0.85184 0.93460 0.92064 0.92714 0.83481 0.85077 0.88310 0.92511 0.92443 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.85 37.16 0.37 -2.34 16 2 C -0.11 -2.44 5.31 -26.73 -0.14 -2.59 16 3 C 0.20 4.80 1.41 -68.86 -0.10 4.70 16 4 H 0.03 0.71 6.27 -51.93 -0.33 0.38 16 5 C -0.63 -16.89 8.25 -34.44 -0.28 -17.17 16 6 H 0.05 1.31 7.71 -52.49 -0.40 0.91 16 7 C 0.03 0.79 5.19 -17.82 -0.09 0.70 16 8 N -0.91 -26.52 12.80 55.43 0.71 -25.81 16 9 Si 1.06 25.12 29.91 -169.99 -5.08 20.04 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.68 -13.51 4.62 -102.16 -0.47 -13.98 16 14 C 0.13 2.46 2.37 -68.86 -0.16 2.30 16 15 H 0.06 1.34 7.49 -51.93 -0.39 0.95 16 16 C -0.13 -2.22 9.37 37.16 0.35 -1.88 16 17 C -0.14 -2.27 4.99 -104.53 -0.52 -2.79 16 18 C -0.04 -0.57 8.88 -39.61 -0.35 -0.93 16 19 C -0.22 -2.72 9.04 -39.42 -0.36 -3.08 16 20 C 0.14 1.88 6.69 -39.22 -0.26 1.61 16 21 O -0.32 -3.72 10.50 -19.43 -0.20 -3.93 16 22 C 0.03 0.21 9.81 101.05 0.99 1.20 16 23 C -0.19 -2.73 9.97 -39.37 -0.39 -3.12 16 24 C 0.14 2.26 7.24 -39.44 -0.29 1.97 16 25 F -0.13 -2.24 16.66 2.25 0.04 -2.21 16 26 H 0.06 1.05 7.61 -51.93 -0.40 0.66 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 1.61 6.27 -51.93 -0.33 1.29 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.27 7.94 6.21 -40.82 -0.25 7.68 16 32 H 0.33 6.59 6.80 -39.29 -0.27 6.33 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.13 7.20 -51.93 -0.37 0.75 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.15 2.05 6.76 -52.49 -0.35 1.69 16 37 H 0.13 1.27 6.30 -52.48 -0.33 0.94 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 40 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 41 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -29.23 335.02 -7.18 -36.41 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.97 Total: 5.84 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -1.24 Total: -21.40 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.24 Total: -39.79 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.20 Total: -3.93 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.23 -7.18 -36.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.556 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds