Wall clock time and date at job start Tue Mar 31 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 H 1.09006 * 109.46858 * 304.14630 * 3 2 1 5 5 C 1.50704 * 109.46767 * 184.14952 * 3 2 1 6 6 H 1.07995 * 119.99827 * 244.22112 * 5 3 2 7 7 C 1.37876 * 119.99942 * 64.22605 * 5 3 2 8 8 N 1.31517 * 120.00045 * 7.64576 * 7 5 3 9 9 Si 1.86804 * 120.00095 * 187.63931 * 7 5 3 10 10 H 1.48499 * 109.46646 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47002 * 119.99788 * 9 7 5 12 12 H 1.48496 * 109.47113 * 240.00228 * 9 7 5 13 13 N 1.46896 * 109.47204 * 64.14906 * 3 2 1 14 14 C 1.46901 * 110.99796 * 205.84509 * 13 3 2 15 15 H 1.09002 * 109.47071 * 322.46151 * 14 13 3 16 16 C 1.53003 * 109.46964 * 82.45710 * 14 13 3 17 17 C 1.50695 * 109.47539 * 202.45645 * 14 13 3 18 18 C 1.38259 * 119.95446 * 339.72978 * 17 14 13 19 19 C 1.38130 * 120.07823 * 179.72288 * 18 17 14 20 20 C 1.38770 * 119.99553 * 0.54776 * 19 18 17 21 21 O 1.35901 * 120.04377 * 179.74071 * 20 19 18 22 22 C 1.42903 * 116.99811 * 359.97438 * 21 20 19 23 23 C 1.38673 * 119.91378 * 359.72788 * 20 19 18 24 24 C 1.38378 * 119.91950 * 359.97438 * 23 20 19 25 25 F 1.35100 * 119.99598 * 180.02562 * 24 23 20 26 26 H 1.09003 * 109.47239 * 304.24289 * 1 2 3 27 27 H 1.09000 * 109.47154 * 64.23799 * 1 2 3 28 28 H 1.08997 * 109.47214 * 184.23941 * 1 2 3 29 29 H 1.08993 * 109.47205 * 239.99483 * 2 1 3 30 30 H 1.09000 * 109.46836 * 119.99155 * 2 1 3 31 31 H 0.97002 * 120.00133 * 4.66757 * 8 7 5 32 32 H 1.00899 * 110.99939 * 81.89846 * 13 3 2 33 33 H 1.09002 * 109.47406 * 184.57629 * 16 14 13 34 34 H 1.09006 * 109.47278 * 304.57294 * 16 14 13 35 35 H 1.08996 * 109.47185 * 64.57171 * 16 14 13 36 36 H 1.08002 * 119.95904 * 359.97438 * 18 17 14 37 37 H 1.08005 * 120.00307 * 180.24447 * 19 18 17 38 38 H 1.08998 * 109.46676 * 179.97438 * 22 21 20 39 39 H 1.08991 * 109.47218 * 299.99660 * 22 21 20 40 40 H 1.08999 * 109.47188 * 59.99504 * 22 21 20 41 41 H 1.08001 * 120.03634 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6172 1.9774 -0.8506 5 6 3.5435 1.4437 -0.1028 6 1 4.1400 1.8305 0.7102 7 6 4.1575 0.9512 -1.2348 8 7 3.4357 0.6204 -2.2833 9 14 6.0145 0.7538 -1.2794 10 1 6.5901 1.1931 0.0171 11 1 6.3552 -0.6725 -1.5138 12 1 6.5743 1.5833 -2.3765 13 7 1.6339 2.1055 1.2464 14 6 1.5381 3.5598 1.0620 15 1 2.3366 3.8955 0.4004 16 6 0.1828 3.9071 0.4427 17 6 1.6705 4.2453 2.3975 18 6 1.4325 3.5396 3.5623 19 6 1.5587 4.1639 4.7880 20 6 1.9137 5.5039 4.8507 21 8 2.0330 6.1205 6.0559 22 6 1.7778 5.3287 7.2178 23 6 2.1468 6.2130 3.6820 24 6 2.0253 5.5825 2.4563 25 9 2.2526 6.2717 1.3167 26 1 -0.3634 0.5783 0.8495 27 1 -0.3633 0.4467 -0.9255 28 1 -0.3633 -1.0248 0.0760 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.4799 0.7858 -2.2859 32 1 2.2652 1.8774 1.9996 33 1 0.1432 4.9756 0.2308 34 1 0.0528 3.3480 -0.4840 35 1 -0.6131 3.6451 1.1397 36 1 1.1515 2.4979 3.5140 37 1 1.3764 3.6104 5.6973 38 1 1.9082 5.9406 8.1103 39 1 0.7563 4.9502 7.1824 40 1 2.4747 4.4911 7.2470 41 1 2.4236 7.2559 3.7286 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:12 Heat of formation + Delta-G solvation = -86.656845 kcal Electronic energy + Delta-G solvation = -22487.445514 eV Core-core repulsion = 19087.986187 eV Total energy + Delta-G solvation = -3399.459326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01513 -41.17293 -39.36631 -37.80778 -35.31085 -33.39648 -31.88031 -31.16551 -29.74779 -28.14974 -27.40921 -25.03085 -24.39578 -23.40535 -21.67503 -21.36174 -19.54457 -19.09566 -18.03137 -17.19838 -16.99024 -16.89060 -16.41086 -16.26540 -15.74708 -15.67496 -15.46654 -15.06103 -14.73916 -14.19605 -14.05135 -13.84903 -13.74847 -13.39783 -13.20991 -13.17234 -12.90198 -12.65522 -12.57530 -12.33178 -12.01295 -11.98052 -11.95351 -11.81286 -11.58640 -11.44629 -10.86991 -10.45086 -9.93489 -9.25734 -9.14652 -8.51498 -6.33245 0.08023 0.22711 1.49198 1.56648 1.72316 2.16814 2.52092 2.53898 3.16788 3.31904 3.42553 3.71824 3.74849 3.98912 4.22904 4.27702 4.40763 4.44277 4.44998 4.47824 4.51851 4.59339 4.69764 4.77703 4.80198 4.93675 4.94639 5.03389 5.04107 5.21870 5.22907 5.25835 5.32858 5.42668 5.52109 5.63945 5.71344 5.96321 6.00438 6.32477 6.47869 6.58123 6.76737 7.46760 8.76697 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.004786 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.875462 B = 5849.453041 C = 6219.636040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C 0.208 3.792 4 H -0.003 1.003 5 C -0.633 4.633 6 H 0.038 0.962 7 C -0.020 4.020 8 N -0.929 5.929 9 Si 1.107 2.893 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.285 1.285 13 N -0.657 5.657 14 C 0.135 3.865 15 H 0.015 0.985 16 C -0.121 4.121 17 C -0.158 4.158 18 C -0.040 4.040 19 C -0.205 4.205 20 C 0.150 3.850 21 O -0.327 6.327 22 C 0.015 3.985 23 C -0.196 4.196 24 C 0.121 3.879 25 F -0.145 7.145 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.333 0.667 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 7.642 18.009 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.140 4.140 3 C 0.099 3.901 4 H 0.015 0.985 5 C -0.672 4.672 6 H 0.056 0.944 7 C -0.220 4.220 8 N -0.566 5.566 9 Si 0.931 3.069 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.212 1.212 13 N -0.287 5.287 14 C 0.024 3.976 15 H 0.033 0.967 16 C -0.178 4.178 17 C -0.160 4.160 18 C -0.058 4.058 19 C -0.223 4.223 20 C 0.104 3.896 21 O -0.241 6.241 22 C -0.079 4.079 23 C -0.215 4.215 24 C 0.101 3.899 25 F -0.124 7.124 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.188 7.216 16.985 19.169 hybrid contribution -0.101 0.800 0.066 0.809 sum -5.289 8.016 17.051 19.569 Atomic orbital electron populations 1.21598 0.95333 1.00578 1.01050 1.21375 0.95420 0.97779 0.99403 1.19083 0.91906 0.91418 0.87737 0.98486 1.22975 0.94048 1.45618 1.04570 0.94388 1.26915 1.09992 0.93071 0.92012 1.70833 1.08741 1.46148 1.30919 0.83051 0.70690 0.77304 0.75858 1.20343 1.20208 1.21157 1.60970 1.54248 1.05655 1.07806 1.20011 0.96994 0.88829 0.91739 0.96742 1.21642 0.95923 1.00023 1.00251 1.20006 1.06169 0.92817 0.96987 1.20917 0.94374 1.00764 0.89786 1.21573 1.07127 0.93797 0.99816 1.18634 0.94508 0.91099 0.85400 1.86049 1.84807 1.40448 1.12781 1.23449 1.02104 0.97349 0.84996 1.20256 1.10284 1.02264 0.88740 1.17334 1.01013 0.89824 0.81719 1.91464 1.92193 1.79434 1.49307 0.91310 0.95031 0.93030 0.94882 0.93799 0.92771 0.84980 0.92673 0.93887 0.90954 0.82918 0.81626 0.85960 0.91107 0.91458 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.85 71.98 0.71 -4.10 16 2 C -0.10 -4.62 5.31 30.60 0.16 -4.46 16 3 C 0.21 10.18 1.41 44.17 0.06 10.24 16 4 H 0.00 -0.15 6.27 -2.38 -0.01 -0.17 16 5 C -0.63 -35.02 8.25 25.60 0.21 -34.81 16 6 H 0.04 2.13 7.71 -2.91 -0.02 2.11 16 7 C -0.02 -1.12 5.19 84.65 0.44 -0.68 16 8 N -0.93 -55.94 12.80 21.45 0.27 -55.66 16 9 Si 1.11 51.02 29.91 68.60 2.05 53.07 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.66 -26.46 4.62 -477.14 -2.21 -28.66 16 14 C 0.13 5.24 2.37 44.17 0.10 5.35 16 15 H 0.01 0.69 7.49 -2.39 -0.02 0.68 16 16 C -0.12 -4.24 9.37 71.98 0.67 -3.56 16 17 C -0.16 -5.21 4.99 -19.80 -0.10 -5.31 16 18 C -0.04 -1.08 8.88 22.25 0.20 -0.88 16 19 C -0.20 -4.44 9.04 22.37 0.20 -4.24 16 20 C 0.15 3.55 6.69 22.50 0.15 3.70 16 21 O -0.33 -6.60 10.50 -92.43 -0.97 -7.57 16 22 C 0.01 0.16 9.81 113.37 1.11 1.27 16 23 C -0.20 -5.33 9.97 22.41 0.22 -5.11 16 24 C 0.12 3.91 7.24 22.36 0.16 4.07 16 25 F -0.15 -5.16 16.66 44.97 0.75 -4.41 16 26 H 0.07 2.41 7.61 -2.39 -0.02 2.39 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.03 1.70 6.27 -2.39 -0.01 1.69 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.26 15.91 6.21 -92.71 -0.58 15.34 16 32 H 0.33 13.20 6.80 -89.69 -0.61 12.59 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.63 7.20 -2.38 -0.02 1.62 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.15 3.90 6.76 -2.91 -0.02 3.88 16 37 H 0.17 2.41 6.30 -2.91 -0.02 2.39 16 38 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 40 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 41 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -64.91 335.02 4.83 -60.08 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.61 Total: 21.69 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 4.31 Total: -38.53 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.93 Total: -84.33 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.97 Total: -7.57 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.75 Total: -4.41 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Total: -64.91 4.83 -60.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.574 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds