Wall clock time and date at job start Tue Mar 31 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47009 * 270.02121 * 7 6 5 9 9 C 1.46901 * 110.99847 * 66.04936 * 8 7 6 10 10 C 1.46905 * 111.00046 * 189.99871 * 8 7 6 11 11 C 1.52999 * 109.46759 * 170.00280 * 10 8 7 12 12 C 1.53001 * 109.46572 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47141 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00234 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00197 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00323 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00065 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46981 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46780 * 120.00305 * 17 15 13 20 20 H 1.48499 * 109.47092 * 239.99998 * 17 15 13 21 21 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 22 22 C 1.38326 * 120.03416 * 359.95854 * 21 6 5 23 23 F 1.35098 * 120.05006 * 179.97438 * 22 21 6 24 24 H 1.08996 * 109.47574 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 26 26 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 27 27 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 28 28 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 30 30 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 31 31 H 1.08997 * 109.47601 * 59.99828 * 9 8 7 32 32 H 1.09000 * 109.47165 * 180.02562 * 9 8 7 33 33 H 1.09007 * 109.46972 * 299.99676 * 9 8 7 34 34 H 1.08996 * 109.47112 * 290.00353 * 10 8 7 35 35 H 1.08998 * 109.46889 * 50.00512 * 10 8 7 36 36 H 1.08996 * 109.47368 * 299.99916 * 11 10 8 37 37 H 1.08998 * 109.47230 * 60.00441 * 11 10 8 38 38 H 1.09004 * 109.47311 * 299.99785 * 12 11 10 39 39 H 1.08998 * 109.47162 * 60.00180 * 12 11 10 40 40 H 0.96996 * 120.00533 * 179.97438 * 16 15 13 41 41 H 1.08004 * 119.98065 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 7 4.2075 5.4513 -1.4038 9 6 2.9320 5.7046 -2.0872 10 6 5.0762 6.6349 -1.4550 11 6 5.4867 6.9038 -2.9042 12 6 6.3919 8.1361 -2.9574 13 6 6.7969 8.4007 -4.3846 14 1 6.4436 7.7548 -5.1749 15 6 7.6176 9.4680 -4.6819 16 7 8.0475 10.2549 -3.7198 17 14 8.1201 9.7955 -6.4510 18 1 7.5079 8.7730 -7.3368 19 1 7.6522 11.1453 -6.8566 20 1 9.5991 9.7291 -6.5659 21 6 4.0580 2.5196 -0.0058 22 6 3.4334 1.2855 -0.0001 23 9 4.1713 0.1538 0.0047 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2138 2.3201 -0.0063 28 1 1.3344 4.5114 -0.0166 29 1 3.3564 5.7503 0.4934 30 1 4.9431 4.9440 0.4974 31 1 2.3872 6.4884 -1.5611 32 1 3.1255 6.0212 -3.1121 33 1 2.3368 4.7914 -2.0957 34 1 4.5377 7.4980 -1.0638 35 1 5.9667 6.4583 -0.8519 36 1 6.0252 6.0407 -3.2954 37 1 4.5961 7.0804 -3.5073 38 1 5.8538 8.9995 -2.5660 39 1 7.2825 7.9591 -2.3544 40 1 8.6251 11.0055 -3.9289 41 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057599504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:12 Heat of formation + Delta-G solvation = -64.516441 kcal Electronic energy + Delta-G solvation = -21199.542403 eV Core-core repulsion = 17801.043156 eV Total energy + Delta-G solvation = -3398.499247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.87647 -40.33392 -38.53680 -36.81300 -33.71171 -31.85901 -31.01114 -30.41298 -28.03884 -27.18679 -26.43181 -24.04287 -22.95178 -22.00807 -20.88530 -19.86088 -18.54313 -17.14400 -16.93087 -16.41853 -16.28693 -15.44998 -15.21521 -15.07972 -15.04906 -14.63816 -14.46564 -14.30903 -13.67721 -13.50197 -12.97916 -12.55330 -12.42811 -12.28463 -11.90196 -11.78345 -11.67652 -11.45349 -11.30230 -11.23030 -11.10692 -10.81150 -10.52719 -10.45854 -9.60074 -9.33714 -9.12137 -9.02366 -8.39539 -8.32737 -8.05597 -5.98031 -3.99810 0.93292 1.00544 2.84306 3.29046 3.32585 3.40012 3.44735 4.01814 4.27436 4.42138 4.49181 4.53690 4.71941 4.77308 4.90806 5.03411 5.09247 5.23858 5.31071 5.37904 5.43123 5.56184 5.63314 5.68695 5.82904 5.85956 5.93167 5.98929 6.13525 6.31674 6.34218 6.41606 6.71328 6.77243 6.99793 7.12527 7.31715 7.36959 7.70877 7.85492 8.02704 8.46258 9.07704 9.64219 11.13472 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032908 B = 0.002634 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.639933 B =10628.731274 C =10740.704102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.089 3.911 4 C -0.183 4.183 5 C -0.083 4.083 6 C -0.077 4.077 7 C 0.093 3.907 8 N -0.537 5.537 9 C 0.019 3.981 10 C 0.056 3.944 11 C -0.105 4.105 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.094 4.094 22 C 0.068 3.932 23 F -0.134 7.134 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 -17.066 10.877 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.043 3.957 4 C -0.201 4.201 5 C -0.102 4.102 6 C -0.078 4.078 7 C -0.035 4.035 8 N -0.261 5.261 9 C -0.129 4.129 10 C -0.071 4.071 11 C -0.143 4.143 12 C -0.016 4.016 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.113 4.113 22 C 0.048 3.952 23 F -0.113 7.113 24 H 0.119 0.881 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.154 0.846 28 H 0.148 0.852 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.015 -17.522 10.660 26.022 hybrid contribution -0.249 0.880 -0.556 1.070 sum -16.264 -16.643 10.104 25.369 Atomic orbital electron populations 1.23096 0.78056 1.04160 1.01482 1.86126 1.21618 1.25958 1.88870 1.18992 0.90826 0.85543 1.00333 1.21067 1.00107 0.91406 1.07555 1.20940 0.94045 0.97199 0.98041 1.19583 0.92981 0.94888 1.00327 1.21033 0.99952 0.91636 0.90864 1.62091 1.14770 1.35937 1.13334 1.22492 0.90572 0.99688 1.00128 1.22335 0.95503 0.88922 1.00337 1.21658 0.99793 1.00431 0.92387 1.19081 0.94069 0.91474 0.97003 1.21292 1.29229 1.11657 0.93334 0.92634 1.25032 0.96220 0.96185 0.97134 1.69972 1.34955 1.17045 1.31677 0.86549 0.78303 0.78048 0.85194 1.19721 1.21079 1.21012 1.20929 1.01341 0.89406 0.99626 1.16965 0.85870 0.83033 1.09303 1.91496 1.76430 1.49009 1.94317 0.88053 0.92515 0.92415 0.84635 0.85248 0.93832 0.89668 0.95977 0.90537 0.91850 0.95208 0.91127 0.92561 0.93411 0.96850 0.96594 0.93112 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.36 10.36 -19.58 -0.20 -3.57 16 3 C 0.09 1.01 6.69 -39.17 -0.26 0.74 16 4 C -0.18 -1.68 9.04 -39.45 -0.36 -2.04 16 5 C -0.08 -0.80 7.95 -39.60 -0.31 -1.12 16 6 C -0.08 -0.86 4.88 -104.61 -0.51 -1.37 16 7 C 0.09 1.09 5.12 -4.98 -0.03 1.07 16 8 N -0.54 -7.82 4.75 -244.37 -1.16 -8.98 16 9 C 0.02 0.26 8.94 60.07 0.54 0.79 16 10 C 0.06 0.95 4.96 -3.82 -0.02 0.93 16 11 C -0.10 -2.17 5.08 -26.73 -0.14 -2.31 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 17 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.09 -1.10 9.67 -39.54 -0.38 -1.48 16 22 C 0.07 0.85 7.31 -39.30 -0.29 0.56 16 23 F -0.13 -1.84 17.11 2.25 0.04 -1.80 16 24 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 26 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 27 H 0.14 0.88 6.30 -52.48 -0.33 0.55 16 28 H 0.13 1.03 8.03 -52.49 -0.42 0.61 16 29 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 30 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 1.11 6.30 -51.93 -0.33 0.78 16 33 H 0.06 0.75 6.16 -51.93 -0.32 0.43 16 34 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 35 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.97 6.47 -51.93 -0.34 0.64 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -31.94 340.77 -8.06 -40.00 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -6.27 Total: -4.98 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.32 Total: -16.24 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.43 Total: -35.38 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.20 Total: -3.57 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.94 -8.06 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057599504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.514 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds