Wall clock time and date at job start Tue Mar 31 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47009 * 270.02121 * 7 6 5 9 9 C 1.46901 * 110.99847 * 66.04936 * 8 7 6 10 10 C 1.46905 * 111.00046 * 189.99871 * 8 7 6 11 11 C 1.52999 * 109.46759 * 170.00280 * 10 8 7 12 12 C 1.53001 * 109.46572 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47141 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00234 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00197 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00323 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00065 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46981 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46780 * 120.00305 * 17 15 13 20 20 H 1.48499 * 109.47092 * 239.99998 * 17 15 13 21 21 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 22 22 C 1.38326 * 120.03416 * 359.95854 * 21 6 5 23 23 F 1.35098 * 120.05006 * 179.97438 * 22 21 6 24 24 H 1.08996 * 109.47574 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 26 26 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 27 27 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 28 28 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 30 30 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 31 31 H 1.08997 * 109.47601 * 59.99828 * 9 8 7 32 32 H 1.09000 * 109.47165 * 180.02562 * 9 8 7 33 33 H 1.09007 * 109.46972 * 299.99676 * 9 8 7 34 34 H 1.08996 * 109.47112 * 290.00353 * 10 8 7 35 35 H 1.08998 * 109.46889 * 50.00512 * 10 8 7 36 36 H 1.08996 * 109.47368 * 299.99916 * 11 10 8 37 37 H 1.08998 * 109.47230 * 60.00441 * 11 10 8 38 38 H 1.09004 * 109.47311 * 299.99785 * 12 11 10 39 39 H 1.08998 * 109.47162 * 60.00180 * 12 11 10 40 40 H 0.96996 * 120.00533 * 179.97438 * 16 15 13 41 41 H 1.08004 * 119.98065 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 7 4.2075 5.4513 -1.4038 9 6 2.9320 5.7046 -2.0872 10 6 5.0762 6.6349 -1.4550 11 6 5.4867 6.9038 -2.9042 12 6 6.3919 8.1361 -2.9574 13 6 6.7969 8.4007 -4.3846 14 1 6.4436 7.7548 -5.1749 15 6 7.6176 9.4680 -4.6819 16 7 8.0475 10.2549 -3.7198 17 14 8.1201 9.7955 -6.4510 18 1 7.5079 8.7730 -7.3368 19 1 7.6522 11.1453 -6.8566 20 1 9.5991 9.7291 -6.5659 21 6 4.0580 2.5196 -0.0058 22 6 3.4334 1.2855 -0.0001 23 9 4.1713 0.1538 0.0047 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2138 2.3201 -0.0063 28 1 1.3344 4.5114 -0.0166 29 1 3.3564 5.7503 0.4934 30 1 4.9431 4.9440 0.4974 31 1 2.3872 6.4884 -1.5611 32 1 3.1255 6.0212 -3.1121 33 1 2.3368 4.7914 -2.0957 34 1 4.5377 7.4980 -1.0638 35 1 5.9667 6.4583 -0.8519 36 1 6.0252 6.0407 -3.2954 37 1 4.5961 7.0804 -3.5073 38 1 5.8538 8.9995 -2.5660 39 1 7.2825 7.9591 -2.3544 40 1 8.6251 11.0055 -3.9289 41 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057599504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:12 Heat of formation + Delta-G solvation = -83.881615 kcal Electronic energy + Delta-G solvation = -21200.382140 eV Core-core repulsion = 17801.043156 eV Total energy + Delta-G solvation = -3399.338983 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.83384 -41.10463 -39.45049 -37.88795 -35.63129 -33.51317 -31.85999 -31.54624 -28.83750 -28.53254 -27.59684 -25.54012 -23.75086 -23.41878 -21.93380 -21.46426 -19.28084 -18.47704 -17.94827 -17.81036 -17.18428 -16.72103 -16.50925 -16.13568 -16.03156 -15.82600 -15.59916 -15.20938 -15.02066 -14.58938 -14.18163 -13.96318 -13.64284 -13.29135 -13.12735 -13.07848 -12.74938 -12.71281 -12.54976 -12.48673 -12.29737 -12.12565 -12.02854 -11.93847 -11.39355 -11.33228 -11.06502 -10.54169 -9.92546 -9.33051 -9.06640 -8.19405 -6.29892 0.11958 0.19282 1.40137 1.40675 1.54114 2.20166 2.40813 2.46060 3.13732 3.17392 3.23676 3.65725 3.78057 4.04056 4.15465 4.24087 4.33519 4.35193 4.38204 4.39806 4.52182 4.57981 4.70929 4.73855 4.76620 4.79300 4.90967 4.98474 5.07130 5.09312 5.12913 5.15289 5.28916 5.50653 5.54359 5.64277 5.77350 5.88201 6.10373 6.19661 6.28929 6.30229 6.87278 7.39219 8.92608 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032908 B = 0.002634 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.639933 B =10628.731274 C =10740.704102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.085 3.915 4 C -0.175 4.175 5 C -0.076 4.076 6 C -0.086 4.086 7 C 0.095 3.905 8 N -0.548 5.548 9 C 0.020 3.980 10 C 0.068 3.932 11 C -0.090 4.090 12 C 0.026 3.974 13 C -0.541 4.541 14 H 0.057 0.943 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.964 3.036 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.278 1.278 21 C -0.100 4.100 22 C 0.036 3.964 23 F -0.150 7.150 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.168 0.832 28 H 0.153 0.847 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.050 0.950 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.488 -17.353 10.505 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.039 3.961 4 C -0.193 4.193 5 C -0.094 4.094 6 C -0.087 4.087 7 C -0.032 4.032 8 N -0.272 5.272 9 C -0.128 4.128 10 C -0.059 4.059 11 C -0.128 4.128 12 C -0.012 4.012 13 C -0.579 4.579 14 H 0.075 0.925 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.788 3.212 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.204 1.204 21 C -0.120 4.120 22 C 0.017 3.983 23 F -0.128 7.128 24 H 0.136 0.864 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.185 0.815 28 H 0.171 0.829 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.051 -17.828 10.294 27.380 hybrid contribution 0.302 0.921 -0.396 1.047 sum -17.749 -16.907 9.898 26.435 Atomic orbital electron populations 1.23436 0.75647 1.05864 1.02815 1.86104 1.24188 1.26030 1.88728 1.19179 0.90543 0.86563 0.99836 1.21385 1.01548 0.90320 1.06044 1.21221 0.93463 0.98318 0.96439 1.19549 0.93751 0.94002 1.01412 1.21043 1.00624 0.92299 0.89201 1.61990 1.15386 1.34390 1.15461 1.22503 0.90202 1.00910 0.99159 1.22031 0.96252 0.90237 0.97398 1.21399 0.98604 0.97496 0.95289 1.18977 0.93837 0.92989 0.95408 1.21721 1.29594 1.11991 0.94582 0.92473 1.25972 0.96111 0.95890 1.01918 1.70094 1.35566 1.17616 1.34094 0.85416 0.78031 0.78223 0.79485 1.18735 1.20238 1.20368 1.20977 1.01485 0.89628 0.99861 1.17281 0.86810 0.82837 1.11388 1.91443 1.76935 1.49792 1.94671 0.86409 0.90910 0.91186 0.81486 0.82919 0.92262 0.89584 0.94701 0.92193 0.90195 0.95101 0.91223 0.93377 0.93096 0.98950 0.98964 0.92777 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.82 10.36 -92.97 -0.96 -7.78 16 3 C 0.09 1.81 6.69 22.53 0.15 1.96 16 4 C -0.17 -2.69 9.04 22.36 0.20 -2.49 16 5 C -0.08 -1.23 7.95 22.26 0.18 -1.05 16 6 C -0.09 -1.77 4.88 -19.85 -0.10 -1.87 16 7 C 0.10 2.08 5.12 85.56 0.44 2.52 16 8 N -0.55 -15.21 4.75 -927.06 -4.41 -19.61 16 9 C 0.02 0.49 8.94 127.69 1.14 1.63 16 10 C 0.07 2.29 4.96 86.30 0.43 2.72 16 11 C -0.09 -3.76 5.08 30.59 0.16 -3.60 16 12 C 0.03 1.36 4.97 29.85 0.15 1.51 16 13 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 16 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 17 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 C -0.10 -2.32 9.67 22.29 0.22 -2.10 16 22 C 0.04 0.91 7.31 22.45 0.16 1.08 16 23 F -0.15 -4.25 17.11 44.97 0.77 -3.48 16 24 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.45 7.67 -2.39 -0.02 0.44 16 26 H 0.07 0.49 7.65 -2.39 -0.02 0.47 16 27 H 0.17 1.45 6.30 -2.91 -0.02 1.43 16 28 H 0.15 1.77 8.03 -2.91 -0.02 1.75 16 29 H 0.06 1.13 8.06 -2.39 -0.02 1.11 16 30 H 0.09 1.85 7.87 -2.39 -0.02 1.83 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.66 6.30 -2.39 -0.02 1.64 16 33 H 0.08 1.68 6.16 -2.38 -0.01 1.66 16 34 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 35 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 2.07 6.47 -2.39 -0.02 2.06 16 38 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -69.53 340.77 3.65 -65.88 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.01 Total: 4.24 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 4.93 Total: -29.15 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -4.12 Total: -76.54 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.96 Total: -7.78 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.77 Total: -3.48 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.53 3.65 -65.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057599504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.999 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds