Wall clock time and date at job start Tue Mar 31 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00257 * 2 1 4 4 C 1.50694 * 109.46735 * 66.04521 * 3 2 1 5 5 C 1.38235 * 120.00301 * 269.72181 * 4 3 2 6 6 C 1.38234 * 120.00678 * 179.76832 * 5 4 3 7 7 C 1.38241 * 119.99388 * 0.51041 * 6 5 4 8 8 C 1.38240 * 120.00042 * 359.75047 * 7 6 5 9 9 C 1.38231 * 119.99858 * 359.97438 * 8 7 6 10 10 C 1.46901 * 110.99978 * 236.04633 * 2 1 3 11 11 C 1.50701 * 109.46992 * 287.80510 * 10 2 1 12 12 C 1.37637 * 120.13049 * 104.76958 * 11 10 2 13 13 C 1.38609 * 120.25464 * 179.74570 * 12 11 10 14 14 C 1.38661 * 120.50069 * 359.97438 * 13 12 11 15 15 C 1.37600 * 120.24505 * 0.02562 * 14 13 12 16 16 C 1.40698 * 120.12948 * 284.49212 * 11 10 2 17 17 C 1.41398 * 120.24476 * 0.25303 * 16 11 10 18 18 H 1.08001 * 119.99855 * 329.89322 * 17 16 11 19 19 C 1.39942 * 119.99847 * 149.88963 * 17 16 11 20 20 N 1.30816 * 120.00369 * 345.57180 * 19 17 16 21 21 Si 1.86804 * 119.99737 * 165.57504 * 19 17 16 22 22 H 1.48502 * 109.46904 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47319 * 120.00035 * 21 19 17 24 24 H 1.48497 * 109.47166 * 240.00202 * 21 19 17 25 25 H 1.08998 * 109.47207 * 179.69675 * 1 2 3 26 26 H 1.08998 * 109.47122 * 299.70418 * 1 2 3 27 27 H 1.09003 * 109.46797 * 59.70017 * 1 2 3 28 28 H 1.09002 * 109.46794 * 186.04172 * 3 2 1 29 29 H 1.09000 * 109.47133 * 306.04639 * 3 2 1 30 30 H 1.08010 * 119.99579 * 0.02562 * 5 4 3 31 31 H 1.07992 * 120.00278 * 180.23189 * 6 5 4 32 32 H 1.07994 * 119.99898 * 179.72085 * 7 6 5 33 33 H 1.08001 * 119.99625 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.99891 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47013 * 167.81001 * 10 2 1 36 36 H 1.08996 * 109.47603 * 47.80284 * 10 2 1 37 37 H 1.08010 * 119.87292 * 359.72554 * 12 11 10 38 38 H 1.07998 * 119.75171 * 179.97438 * 13 12 11 39 39 H 1.07994 * 119.87549 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.12367 * 179.97438 * 15 14 13 41 41 H 0.97002 * 119.99916 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2984 5 6 0.4539 2.7539 1.4062 6 6 0.1227 3.3696 2.5987 7 6 0.9796 3.2874 3.6803 8 6 2.1653 2.5850 3.5709 9 6 2.4937 1.9646 2.3801 10 6 1.9955 -0.7660 -1.1376 11 6 1.7699 -2.2370 -0.9002 12 6 0.7747 -2.9019 -1.5798 13 6 0.5684 -4.2559 -1.3674 14 6 1.3603 -4.9562 -0.4700 15 6 2.3610 -4.3120 0.2205 16 6 2.5795 -2.9373 0.0128 17 6 3.6053 -2.2650 0.7165 18 1 4.1023 -1.4178 0.2675 19 6 3.9763 -2.6973 1.9947 20 7 3.2069 -3.5244 2.6545 21 14 5.5701 -2.0930 2.7590 22 1 6.2538 -1.1726 1.8152 23 1 5.2715 -1.3741 4.0235 24 1 6.4525 -3.2526 3.0454 25 1 -0.3633 -1.0276 -0.0054 26 1 -0.3633 0.5092 0.8926 27 1 -0.3633 0.5185 -0.8873 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 -0.2137 2.8215 0.5598 31 1 -0.8034 3.9186 2.6839 32 1 0.7230 3.7722 4.6105 33 1 2.8350 2.5212 4.4158 34 1 3.4202 1.4162 2.2946 35 1 3.0635 -0.5744 -1.2415 36 1 1.4813 -0.4621 -2.0494 37 1 0.1519 -2.3664 -2.2813 38 1 -0.2151 -4.7695 -1.9048 39 1 1.1910 -6.0111 -0.3126 40 1 2.9764 -4.8592 0.9193 41 1 3.4643 -3.8243 3.5403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057661019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:10 Heat of formation + Delta-G solvation = 47.304622 kcal Electronic energy + Delta-G solvation = -21676.708338 eV Core-core repulsion = 18713.827241 eV Total energy + Delta-G solvation = -2962.881097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.20032 -37.88479 -36.05306 -33.48619 -31.77609 -30.67473 -29.93271 -29.31506 -26.78973 -25.89956 -24.76871 -22.35035 -22.08684 -20.86694 -20.45267 -19.33298 -17.04646 -16.51440 -15.45670 -15.14773 -15.04782 -14.92594 -14.47477 -14.16526 -13.83723 -13.24383 -13.10793 -13.07170 -12.51653 -12.42849 -12.29420 -11.63184 -11.52276 -11.41389 -11.19411 -11.14810 -11.04662 -10.85685 -10.68377 -10.54856 -10.46520 -10.33766 -9.43750 -9.23176 -9.07891 -8.65177 -8.50603 -7.53500 -7.28938 -7.21387 -6.61071 -4.19489 1.59051 1.66644 2.84606 3.01262 3.13631 3.17241 3.29387 4.00711 4.03070 4.73791 4.87489 5.07114 5.10880 5.21616 5.33560 5.58097 5.74168 5.75405 5.84645 5.88973 5.94296 6.00096 6.13829 6.24632 6.26496 6.30796 6.34850 6.48536 6.53910 6.61399 6.67902 6.75019 6.84833 6.95321 7.20558 7.25543 7.31419 7.45108 7.70157 7.72460 7.81266 8.01096 8.13099 8.17532 8.41631 8.73481 9.02882 9.08943 10.35952 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.006921 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.060483 B = 4044.977388 C = 5508.497722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.510 5.510 3 C 0.092 3.908 4 C -0.064 4.064 5 C -0.116 4.116 6 C -0.127 4.127 7 C -0.128 4.128 8 C -0.123 4.123 9 C -0.092 4.092 10 C 0.129 3.871 11 C -0.189 4.189 12 C -0.088 4.088 13 C -0.244 4.244 14 C -0.106 4.106 15 C -0.161 4.161 16 C 0.134 3.866 17 C -0.436 4.436 18 H 0.075 0.925 19 C 0.079 3.921 20 N -0.798 5.798 21 Si 0.897 3.103 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.009 0.991 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.069 0.931 36 H 0.015 0.985 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 10.462 -0.350 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.233 5.233 3 C -0.036 4.036 4 C -0.065 4.065 5 C -0.135 4.135 6 C -0.145 4.145 7 C -0.146 4.146 8 C -0.141 4.141 9 C -0.110 4.110 10 C 0.003 3.997 11 C -0.191 4.191 12 C -0.107 4.107 13 C -0.264 4.264 14 C -0.125 4.125 15 C -0.180 4.180 16 C 0.131 3.869 17 C -0.466 4.466 18 H 0.093 0.907 19 C -0.137 4.137 20 N -0.424 5.424 21 Si 0.723 3.277 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.028 0.972 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.033 0.967 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.130 0.870 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.976 10.125 0.295 10.321 hybrid contribution 0.223 0.495 -0.081 0.549 sum -1.753 10.620 0.214 10.766 Atomic orbital electron populations 1.22361 0.88325 1.02313 0.98818 1.61919 1.06943 1.09957 1.44440 1.21072 1.00518 0.89433 0.92546 1.19827 0.94352 0.96206 0.96066 1.21020 0.96486 0.98239 0.97744 1.21017 0.99412 1.00576 0.93482 1.21051 0.94954 1.00224 0.98408 1.21135 0.97148 0.98107 0.97696 1.21103 1.00017 0.97506 0.92391 1.20619 0.98686 0.91777 0.88626 1.19433 1.00568 0.92920 1.06215 1.20366 0.97193 0.94264 0.98860 1.20285 1.04828 0.94898 1.06372 1.20666 0.97029 0.97439 0.97375 1.21258 1.00094 0.94824 1.01849 1.17349 0.89857 0.90793 0.88895 1.19384 1.15405 1.12539 0.99258 0.90677 1.25777 0.96891 0.93790 0.97292 1.69822 1.34291 1.26792 1.11513 0.86437 0.82468 0.79437 0.79399 1.18551 1.20105 1.20097 0.90894 0.92146 0.97237 0.90174 0.95137 0.86704 0.86651 0.86697 0.86447 0.85789 0.91316 0.96711 0.90012 0.89876 0.89762 0.87032 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 8.97 60.07 0.54 1.08 16 2 N -0.51 -9.86 4.62 -245.82 -1.14 -11.00 16 3 C 0.09 1.50 5.11 -4.98 -0.03 1.47 16 4 C -0.06 -1.02 4.87 -104.63 -0.51 -1.53 16 5 C -0.12 -1.64 7.99 -39.58 -0.32 -1.96 16 6 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 7 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 8 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 9 C -0.09 -1.48 9.70 -39.58 -0.38 -1.87 16 10 C 0.13 2.60 4.46 -4.98 -0.02 2.58 16 11 C -0.19 -4.43 4.74 -103.91 -0.49 -4.92 16 12 C -0.09 -1.96 9.04 -39.66 -0.36 -2.32 16 13 C -0.24 -5.54 10.05 -39.29 -0.39 -5.93 16 14 C -0.11 -2.54 10.02 -39.66 -0.40 -2.94 16 15 C -0.16 -4.19 8.65 -38.87 -0.34 -4.52 16 16 C 0.13 3.47 5.52 -106.82 -0.59 2.88 16 17 C -0.44 -11.16 8.33 -37.74 -0.31 -11.48 16 18 H 0.08 1.87 6.68 -52.49 -0.35 1.52 16 19 C 0.08 1.98 5.17 -17.35 -0.09 1.89 16 20 N -0.80 -20.88 11.15 55.55 0.62 -20.26 16 21 Si 0.90 18.81 29.58 -169.99 -5.03 13.78 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H 0.07 1.47 6.90 -51.93 -0.36 1.11 16 26 H 0.06 1.05 6.20 -51.93 -0.32 0.73 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.08 1.29 7.80 -51.93 -0.41 0.88 16 29 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 30 H 0.11 1.45 8.05 -52.48 -0.42 1.03 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.07 1.38 6.66 -51.93 -0.35 1.04 16 36 H 0.01 0.27 7.86 -51.93 -0.41 -0.13 16 37 H 0.08 1.63 8.00 -52.48 -0.42 1.21 16 38 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.11 3.01 6.47 -52.49 -0.34 2.67 16 41 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -27.59 336.92 -11.24 -38.83 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.88 Total: 7.41 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -4.89 Total: -33.84 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: -0.52 Total: -31.26 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.59 -11.24 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.137 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds