Wall clock time and date at job start Tue Mar 31 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00257 * 2 1 4 4 C 1.50694 * 109.46735 * 66.04521 * 3 2 1 5 5 C 1.38235 * 120.00301 * 269.72181 * 4 3 2 6 6 C 1.38234 * 120.00678 * 179.76832 * 5 4 3 7 7 C 1.38241 * 119.99388 * 0.51041 * 6 5 4 8 8 C 1.38240 * 120.00042 * 359.75047 * 7 6 5 9 9 C 1.38231 * 119.99858 * 359.97438 * 8 7 6 10 10 C 1.46901 * 110.99978 * 236.04633 * 2 1 3 11 11 C 1.50701 * 109.46992 * 287.80510 * 10 2 1 12 12 C 1.37637 * 120.13049 * 104.76958 * 11 10 2 13 13 C 1.38609 * 120.25464 * 179.74570 * 12 11 10 14 14 C 1.38661 * 120.50069 * 359.97438 * 13 12 11 15 15 C 1.37600 * 120.24505 * 0.02562 * 14 13 12 16 16 C 1.40698 * 120.12948 * 284.49212 * 11 10 2 17 17 C 1.41398 * 120.24476 * 0.25303 * 16 11 10 18 18 H 1.08001 * 119.99855 * 329.89322 * 17 16 11 19 19 C 1.39942 * 119.99847 * 149.88963 * 17 16 11 20 20 N 1.30816 * 120.00369 * 345.57180 * 19 17 16 21 21 Si 1.86804 * 119.99737 * 165.57504 * 19 17 16 22 22 H 1.48502 * 109.46904 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47319 * 120.00035 * 21 19 17 24 24 H 1.48497 * 109.47166 * 240.00202 * 21 19 17 25 25 H 1.08998 * 109.47207 * 179.69675 * 1 2 3 26 26 H 1.08998 * 109.47122 * 299.70418 * 1 2 3 27 27 H 1.09003 * 109.46797 * 59.70017 * 1 2 3 28 28 H 1.09002 * 109.46794 * 186.04172 * 3 2 1 29 29 H 1.09000 * 109.47133 * 306.04639 * 3 2 1 30 30 H 1.08010 * 119.99579 * 0.02562 * 5 4 3 31 31 H 1.07992 * 120.00278 * 180.23189 * 6 5 4 32 32 H 1.07994 * 119.99898 * 179.72085 * 7 6 5 33 33 H 1.08001 * 119.99625 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.99891 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47013 * 167.81001 * 10 2 1 36 36 H 1.08996 * 109.47603 * 47.80284 * 10 2 1 37 37 H 1.08010 * 119.87292 * 359.72554 * 12 11 10 38 38 H 1.07998 * 119.75171 * 179.97438 * 13 12 11 39 39 H 1.07994 * 119.87549 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.12367 * 179.97438 * 15 14 13 41 41 H 0.97002 * 119.99916 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2984 5 6 0.4539 2.7539 1.4062 6 6 0.1227 3.3696 2.5987 7 6 0.9796 3.2874 3.6803 8 6 2.1653 2.5850 3.5709 9 6 2.4937 1.9646 2.3801 10 6 1.9955 -0.7660 -1.1376 11 6 1.7699 -2.2370 -0.9002 12 6 0.7747 -2.9019 -1.5798 13 6 0.5684 -4.2559 -1.3674 14 6 1.3603 -4.9562 -0.4700 15 6 2.3610 -4.3120 0.2205 16 6 2.5795 -2.9373 0.0128 17 6 3.6053 -2.2650 0.7165 18 1 4.1023 -1.4178 0.2675 19 6 3.9763 -2.6973 1.9947 20 7 3.2069 -3.5244 2.6545 21 14 5.5701 -2.0930 2.7590 22 1 6.2538 -1.1726 1.8152 23 1 5.2715 -1.3741 4.0235 24 1 6.4525 -3.2526 3.0454 25 1 -0.3633 -1.0276 -0.0054 26 1 -0.3633 0.5092 0.8926 27 1 -0.3633 0.5185 -0.8873 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 -0.2137 2.8215 0.5598 31 1 -0.8034 3.9186 2.6839 32 1 0.7230 3.7722 4.6105 33 1 2.8350 2.5212 4.4158 34 1 3.4202 1.4162 2.2946 35 1 3.0635 -0.5744 -1.2415 36 1 1.4813 -0.4621 -2.0494 37 1 0.1519 -2.3664 -2.2813 38 1 -0.2151 -4.7695 -1.9048 39 1 1.1910 -6.0111 -0.3126 40 1 2.9764 -4.8592 0.9193 41 1 3.4643 -3.8243 3.5403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057661019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:10 Heat of formation + Delta-G solvation = 34.815730 kcal Electronic energy + Delta-G solvation = -21677.249897 eV Core-core repulsion = 18713.827241 eV Total energy + Delta-G solvation = -2963.422656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39707 -39.55701 -37.53836 -35.36640 -33.15516 -31.78075 -31.54567 -31.10351 -28.18277 -27.54308 -26.48340 -23.65155 -23.30050 -22.73726 -21.68406 -21.08047 -18.93464 -17.61132 -17.18756 -16.45954 -16.44918 -16.37735 -16.01592 -15.62465 -15.43088 -14.80021 -14.59328 -14.30906 -14.20866 -13.68893 -13.47499 -13.31238 -13.24742 -12.92360 -12.75995 -12.74532 -12.59640 -12.41883 -12.28345 -12.07417 -11.80224 -11.74641 -11.26905 -11.03315 -10.95950 -9.74201 -9.64025 -9.17554 -9.11577 -8.89048 -8.48706 -6.14211 0.48892 0.57236 1.04925 1.17049 1.39060 1.51308 1.54101 2.26294 2.83985 2.91757 3.43429 3.88002 3.95253 4.02045 4.21543 4.31561 4.32081 4.38654 4.44150 4.55280 4.57761 4.66465 4.69499 4.77007 4.78917 4.84494 4.92308 5.09387 5.13558 5.18112 5.22619 5.31808 5.40838 5.58920 5.61735 5.66931 5.81238 5.85009 6.07077 6.16872 6.19866 6.26039 6.39332 6.42565 6.55767 6.83063 7.11948 7.18920 8.50312 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.006921 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.060483 B = 4044.977388 C = 5508.497722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.534 5.534 3 C 0.097 3.903 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.128 4.128 8 C -0.134 4.134 9 C -0.119 4.119 10 C 0.135 3.865 11 C -0.191 4.191 12 C -0.092 4.092 13 C -0.243 4.243 14 C -0.116 4.116 15 C -0.190 4.190 16 C 0.104 3.896 17 C -0.454 4.454 18 H 0.073 0.927 19 C 0.038 3.962 20 N -0.835 5.835 21 Si 0.962 3.038 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.271 1.271 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 12.362 -0.734 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.258 5.258 3 C -0.030 4.030 4 C -0.082 4.082 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.138 4.138 10 C 0.009 3.991 11 C -0.193 4.193 12 C -0.111 4.111 13 C -0.262 4.262 14 C -0.134 4.134 15 C -0.210 4.210 16 C 0.101 3.899 17 C -0.485 4.485 18 H 0.091 0.909 19 C -0.174 4.174 20 N -0.463 5.463 21 Si 0.784 3.216 22 H -0.179 1.179 23 H -0.197 1.197 24 H -0.196 1.196 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.290 12.030 -0.102 12.472 hybrid contribution 0.510 -0.083 -0.017 0.517 sum -2.780 11.947 -0.119 12.267 Atomic orbital electron populations 1.22253 0.87592 1.01002 1.00156 1.61771 1.07805 1.11854 1.44365 1.21036 1.00105 0.88083 0.93780 1.19863 0.95388 0.97289 0.95680 1.21238 0.95888 0.97786 0.98943 1.21421 1.00328 0.99814 0.92752 1.21428 0.94082 0.99334 0.99720 1.21367 0.98234 0.98177 0.97413 1.21150 1.00017 0.98810 0.93781 1.20504 0.98656 0.90117 0.89832 1.19851 0.99851 0.94732 1.04849 1.20718 0.97041 0.94420 0.98917 1.20677 1.04715 0.95274 1.05509 1.20922 0.96632 0.98549 0.97332 1.21233 1.01457 0.95346 1.02975 1.17695 0.90927 0.91110 0.90157 1.19493 1.16208 1.12887 0.99880 0.90940 1.26505 0.99599 0.93812 0.97522 1.69901 1.35961 1.28367 1.12029 0.85459 0.78597 0.78989 0.78545 1.17921 1.19712 1.19633 0.93446 0.91803 0.94745 0.90959 0.93102 0.85075 0.83586 0.83836 0.85255 0.87622 0.92056 0.94624 0.87026 0.86959 0.87984 0.89198 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 8.97 127.69 1.15 2.46 16 2 N -0.53 -20.35 4.62 -931.65 -4.31 -24.66 16 3 C 0.10 3.09 5.11 85.55 0.44 3.53 16 4 C -0.08 -2.53 4.87 -19.87 -0.10 -2.63 16 5 C -0.12 -3.11 7.99 22.27 0.18 -2.93 16 6 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 7 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 8 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 9 C -0.12 -3.87 9.70 22.27 0.22 -3.66 16 10 C 0.14 5.36 4.46 85.56 0.38 5.74 16 11 C -0.19 -8.89 4.74 -19.40 -0.09 -8.99 16 12 C -0.09 -3.97 9.04 22.22 0.20 -3.77 16 13 C -0.24 -10.60 10.05 22.46 0.23 -10.38 16 14 C -0.12 -5.53 10.02 22.22 0.22 -5.31 16 15 C -0.19 -10.25 8.65 22.73 0.20 -10.05 16 16 C 0.10 5.52 5.52 -21.29 -0.12 5.40 16 17 C -0.45 -24.08 8.33 23.46 0.20 -23.88 16 18 H 0.07 3.74 6.68 -2.91 -0.02 3.72 16 19 C 0.04 1.98 5.17 85.26 0.44 2.43 16 20 N -0.84 -45.44 11.15 21.82 0.24 -45.20 16 21 Si 0.96 39.74 29.58 68.60 2.03 41.77 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H 0.05 1.85 6.90 -2.39 -0.02 1.84 16 26 H 0.06 2.13 6.20 -2.39 -0.01 2.11 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 2.36 7.80 -2.39 -0.02 2.34 16 29 H 0.05 1.39 8.06 -2.39 -0.02 1.37 16 30 H 0.13 2.90 8.05 -2.91 -0.02 2.87 16 31 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.11 3.70 8.06 -2.91 -0.02 3.67 16 35 H 0.06 2.48 6.66 -2.39 -0.02 2.47 16 36 H 0.04 1.24 7.86 -2.39 -0.02 1.23 16 37 H 0.11 4.09 8.00 -2.91 -0.02 4.07 16 38 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 40 H 0.09 5.12 6.47 -2.91 -0.02 5.10 16 41 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 Total: -1.00 -60.63 336.92 3.18 -57.45 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 1.00 Total: 31.56 kcal Atomic # 6 Polarization: -65.14 SS G_CDS: 4.21 Total: -60.93 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -4.06 Total: -69.86 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -60.63 3.18 -57.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.270 kcal (2) G-P(sol) polarization free energy of solvation -60.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds