Wall clock time and date at job start Tue Mar 31 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46890 * 111.00284 * 2 1 4 4 C 1.50697 * 109.47389 * 66.04323 * 3 2 1 5 5 C 1.38234 * 120.00216 * 269.73119 * 4 3 2 6 6 C 1.38241 * 119.99609 * 179.76543 * 5 4 3 7 7 C 1.38227 * 120.00221 * 0.50268 * 6 5 4 8 8 C 1.38243 * 120.00135 * 359.74622 * 7 6 5 9 9 C 1.38229 * 119.99686 * 0.02562 * 8 7 6 10 10 C 1.46897 * 110.99433 * 236.04244 * 2 1 3 11 11 C 1.50695 * 109.47787 * 293.95739 * 10 2 1 12 12 C 1.38644 * 119.74741 * 269.73464 * 11 10 2 13 13 C 1.37620 * 120.24329 * 179.72030 * 12 11 10 14 14 C 1.40718 * 119.74730 * 0.56279 * 13 12 11 15 15 C 1.41393 * 120.24271 * 179.68543 * 14 13 12 16 16 H 1.07999 * 119.99889 * 155.31501 * 15 14 13 17 17 C 1.39948 * 120.00101 * 335.31142 * 15 14 13 18 18 N 1.30825 * 120.00107 * 342.23631 * 17 15 14 19 19 Si 1.86796 * 120.00001 * 162.23436 * 17 15 14 20 20 H 1.48504 * 109.47308 * 94.66505 * 19 17 15 21 21 H 1.48502 * 109.47259 * 214.66396 * 19 17 15 22 22 H 1.48505 * 109.47045 * 334.66529 * 19 17 15 23 23 C 1.40715 * 119.51113 * 359.71067 * 14 13 12 24 24 C 1.37625 * 119.74448 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.47471 * 183.95060 * 1 2 3 26 26 H 1.08998 * 109.46760 * 303.95853 * 1 2 3 27 27 H 1.09006 * 109.46975 * 63.94953 * 1 2 3 28 28 H 1.09001 * 109.46904 * 186.04856 * 3 2 1 29 29 H 1.09006 * 109.46965 * 306.04508 * 3 2 1 30 30 H 1.07993 * 119.99848 * 359.97438 * 5 4 3 31 31 H 1.07998 * 119.99648 * 180.22593 * 6 5 4 32 32 H 1.08004 * 120.00159 * 179.72644 * 7 6 5 33 33 H 1.07991 * 119.99961 * 179.97438 * 8 7 6 34 34 H 1.08001 * 120.00167 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47613 * 53.96085 * 10 2 1 36 36 H 1.09004 * 109.47142 * 173.95703 * 10 2 1 37 37 H 1.07996 * 119.87379 * 359.97196 * 12 11 10 38 38 H 1.08000 * 120.12387 * 180.28058 * 13 12 11 39 39 H 0.96997 * 120.00177 * 179.97438 * 18 17 15 40 40 H 1.07993 * 120.12876 * 179.97438 * 23 14 13 41 41 H 1.07996 * 119.87411 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 6 0.4539 2.7538 1.4061 6 6 0.1228 3.3696 2.5987 7 6 0.9797 3.2874 3.6802 8 6 2.1654 2.5850 3.5709 9 6 2.4942 1.9653 2.3799 10 6 1.9953 -0.7661 -1.1376 11 6 1.6368 -2.2204 -0.9729 12 6 2.5027 -3.0708 -0.3026 13 6 2.1828 -4.3996 -0.1414 14 6 0.9771 -4.8966 -0.6701 15 6 0.6412 -6.2614 -0.5163 16 1 -0.3936 -6.5693 -0.5452 17 6 1.6494 -7.2132 -0.3268 18 7 2.8883 -6.9234 -0.6314 19 14 1.2264 -8.8976 0.3612 20 1 1.0171 -9.8511 -0.7578 21 1 2.3410 -9.3766 1.2177 22 1 -0.0151 -8.8041 1.1708 23 6 0.1087 -4.0255 -1.3535 24 6 0.4460 -2.6990 -1.4972 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0798 1.3442 -0.1083 29 1 1.5612 1.9272 -0.8310 30 1 -0.2133 2.8220 0.5597 31 1 -0.8032 3.9187 2.6840 32 1 0.7232 3.7723 4.6106 33 1 2.8350 2.5211 4.4157 34 1 3.4206 1.4168 2.2943 35 1 1.5611 -0.3874 -2.0628 36 1 3.0797 -0.6613 -1.1757 37 1 3.4297 -2.6881 0.0979 38 1 2.8566 -5.0593 0.3851 39 1 3.5872 -7.5830 -0.4997 40 1 -0.8189 -4.3964 -1.7637 41 1 -0.2188 -2.0287 -2.0217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057661503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:14 Heat of formation + Delta-G solvation = 42.632740 kcal Electronic energy + Delta-G solvation = -20646.440617 eV Core-core repulsion = 17683.356933 eV Total energy + Delta-G solvation = -2963.083685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.45719 -37.96087 -36.35154 -33.70547 -31.79787 -30.92000 -30.01318 -29.20743 -27.22552 -26.71687 -24.32371 -22.54677 -22.08333 -20.92655 -20.68281 -19.66576 -17.26554 -16.75977 -15.46798 -15.44714 -15.34648 -15.15079 -14.41644 -14.37444 -13.89480 -13.44315 -13.28948 -13.21146 -12.65201 -12.54483 -12.42169 -11.92140 -11.76786 -11.52715 -11.41122 -11.29076 -11.05754 -11.01486 -10.92532 -10.82247 -10.42299 -10.31391 -9.56553 -9.34583 -9.10513 -8.89449 -8.76276 -7.91878 -7.39969 -7.25060 -6.73663 -4.31723 1.34505 1.41619 2.76869 3.08232 3.11147 3.12493 3.20104 3.76228 3.95132 4.45432 4.75624 4.82049 4.88157 4.99390 5.10356 5.32781 5.50062 5.58385 5.61146 5.69255 5.74750 5.79539 5.95201 6.01393 6.03437 6.09752 6.24866 6.38911 6.42264 6.45004 6.48410 6.50171 6.67185 6.98864 7.00549 7.09823 7.32171 7.36208 7.45456 7.47901 7.65466 7.91456 8.08966 8.18404 8.33672 8.68072 8.92857 9.01527 10.21000 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.003264 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.436047 B = 8576.016685 C = 8878.847059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.528 5.528 3 C 0.089 3.911 4 C -0.068 4.068 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.126 4.126 8 C -0.122 4.122 9 C -0.098 4.098 10 C 0.120 3.880 11 C -0.206 4.206 12 C -0.079 4.079 13 C -0.167 4.167 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.228 4.228 24 C -0.084 4.084 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.015 0.985 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.280 0.720 40 H 0.089 0.911 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 15.528 4.336 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.252 5.252 3 C -0.039 4.039 4 C -0.069 4.069 5 C -0.133 4.133 6 C -0.142 4.142 7 C -0.145 4.145 8 C -0.140 4.140 9 C -0.117 4.117 10 C -0.006 4.006 11 C -0.208 4.208 12 C -0.098 4.098 13 C -0.186 4.186 14 C 0.110 3.890 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.419 5.419 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.247 4.247 24 C -0.102 4.102 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.034 0.966 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.604 15.189 4.728 15.919 hybrid contribution -0.436 -0.459 -0.450 0.777 sum -1.040 14.730 4.278 15.373 Atomic orbital electron populations 1.22455 0.87717 1.03234 0.99041 1.62131 1.08034 1.10474 1.44562 1.21084 1.00388 0.89465 0.92950 1.19829 0.94541 0.96588 0.95933 1.21060 0.96455 0.97968 0.97867 1.21076 0.99513 1.00222 0.93384 1.21099 0.94877 0.99968 0.98533 1.21142 0.97143 0.98084 0.97672 1.21056 0.99810 0.98320 0.92508 1.20767 0.98425 0.92014 0.89391 1.18817 0.98228 0.92744 1.11012 1.20480 0.97264 0.93845 0.98188 1.21295 0.99659 0.93679 1.04006 1.17611 0.91047 0.92700 0.87608 1.19586 0.94220 0.91613 1.43929 0.90566 1.25899 0.94479 1.00919 0.92815 1.69830 1.01494 1.36055 1.34489 0.86347 0.79510 0.81431 0.79705 1.19640 1.20044 1.18445 1.20930 1.02018 0.93977 1.07814 1.20342 0.95385 0.94993 0.99513 0.90116 0.92034 0.96638 0.90239 0.94588 0.86499 0.86403 0.86470 0.86261 0.85936 0.95883 0.91671 0.89554 0.86603 0.90946 0.89228 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.79 60.07 0.53 0.90 16 2 N -0.53 -8.64 4.74 -245.83 -1.17 -9.81 16 3 C 0.09 1.18 5.12 -4.98 -0.03 1.16 16 4 C -0.07 -0.88 4.88 -104.62 -0.51 -1.39 16 5 C -0.11 -1.35 7.92 -39.58 -0.31 -1.67 16 6 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 7 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 8 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 9 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 10 C 0.12 2.12 5.11 -4.98 -0.03 2.10 16 11 C -0.21 -4.47 4.91 -104.33 -0.51 -4.98 16 12 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 13 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 14 C 0.11 3.04 5.57 -106.82 -0.60 2.44 16 15 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 17 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 18 N -0.79 -20.67 10.97 55.55 0.61 -20.06 16 19 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 24 C -0.08 -1.86 7.92 -39.66 -0.31 -2.17 16 25 H 0.08 1.47 6.16 -51.93 -0.32 1.15 16 26 H 0.06 0.91 5.91 -51.93 -0.31 0.60 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 29 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 30 H 0.12 1.25 8.00 -52.49 -0.42 0.83 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 36 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 37 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 38 H 0.12 3.15 6.18 -52.49 -0.32 2.83 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.08 1.63 8.02 -52.49 -0.42 1.21 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -27.88 337.86 -11.33 -39.21 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.96 Total: 6.12 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: -4.88 Total: -34.33 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: -0.56 Total: -29.87 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.88 -11.33 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.845 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds