Wall clock time and date at job start Tue Mar 31 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46890 * 111.00284 * 2 1 4 4 C 1.50697 * 109.47389 * 66.04323 * 3 2 1 5 5 C 1.38234 * 120.00216 * 269.73119 * 4 3 2 6 6 C 1.38241 * 119.99609 * 179.76543 * 5 4 3 7 7 C 1.38227 * 120.00221 * 0.50268 * 6 5 4 8 8 C 1.38243 * 120.00135 * 359.74622 * 7 6 5 9 9 C 1.38229 * 119.99686 * 0.02562 * 8 7 6 10 10 C 1.46897 * 110.99433 * 236.04244 * 2 1 3 11 11 C 1.50695 * 109.47787 * 293.95739 * 10 2 1 12 12 C 1.38644 * 119.74741 * 269.73464 * 11 10 2 13 13 C 1.37620 * 120.24329 * 179.72030 * 12 11 10 14 14 C 1.40718 * 119.74730 * 0.56279 * 13 12 11 15 15 C 1.41393 * 120.24271 * 179.68543 * 14 13 12 16 16 H 1.07999 * 119.99889 * 155.31501 * 15 14 13 17 17 C 1.39948 * 120.00101 * 335.31142 * 15 14 13 18 18 N 1.30825 * 120.00107 * 342.23631 * 17 15 14 19 19 Si 1.86796 * 120.00001 * 162.23436 * 17 15 14 20 20 H 1.48504 * 109.47308 * 94.66505 * 19 17 15 21 21 H 1.48502 * 109.47259 * 214.66396 * 19 17 15 22 22 H 1.48505 * 109.47045 * 334.66529 * 19 17 15 23 23 C 1.40715 * 119.51113 * 359.71067 * 14 13 12 24 24 C 1.37625 * 119.74448 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.47471 * 183.95060 * 1 2 3 26 26 H 1.08998 * 109.46760 * 303.95853 * 1 2 3 27 27 H 1.09006 * 109.46975 * 63.94953 * 1 2 3 28 28 H 1.09001 * 109.46904 * 186.04856 * 3 2 1 29 29 H 1.09006 * 109.46965 * 306.04508 * 3 2 1 30 30 H 1.07993 * 119.99848 * 359.97438 * 5 4 3 31 31 H 1.07998 * 119.99648 * 180.22593 * 6 5 4 32 32 H 1.08004 * 120.00159 * 179.72644 * 7 6 5 33 33 H 1.07991 * 119.99961 * 179.97438 * 8 7 6 34 34 H 1.08001 * 120.00167 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47613 * 53.96085 * 10 2 1 36 36 H 1.09004 * 109.47142 * 173.95703 * 10 2 1 37 37 H 1.07996 * 119.87379 * 359.97196 * 12 11 10 38 38 H 1.08000 * 120.12387 * 180.28058 * 13 12 11 39 39 H 0.96997 * 120.00177 * 179.97438 * 18 17 15 40 40 H 1.07993 * 120.12876 * 179.97438 * 23 14 13 41 41 H 1.07996 * 119.87411 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 6 0.4539 2.7538 1.4061 6 6 0.1228 3.3696 2.5987 7 6 0.9797 3.2874 3.6802 8 6 2.1654 2.5850 3.5709 9 6 2.4942 1.9653 2.3799 10 6 1.9953 -0.7661 -1.1376 11 6 1.6368 -2.2204 -0.9729 12 6 2.5027 -3.0708 -0.3026 13 6 2.1828 -4.3996 -0.1414 14 6 0.9771 -4.8966 -0.6701 15 6 0.6412 -6.2614 -0.5163 16 1 -0.3936 -6.5693 -0.5452 17 6 1.6494 -7.2132 -0.3268 18 7 2.8883 -6.9234 -0.6314 19 14 1.2264 -8.8976 0.3612 20 1 1.0171 -9.8511 -0.7578 21 1 2.3410 -9.3766 1.2177 22 1 -0.0151 -8.8041 1.1708 23 6 0.1087 -4.0255 -1.3535 24 6 0.4460 -2.6990 -1.4972 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0798 1.3442 -0.1083 29 1 1.5612 1.9272 -0.8310 30 1 -0.2133 2.8220 0.5597 31 1 -0.8032 3.9187 2.6840 32 1 0.7232 3.7723 4.6106 33 1 2.8350 2.5211 4.4157 34 1 3.4206 1.4168 2.2943 35 1 1.5611 -0.3874 -2.0628 36 1 3.0797 -0.6613 -1.1757 37 1 3.4297 -2.6881 0.0979 38 1 2.8566 -5.0593 0.3851 39 1 3.5872 -7.5830 -0.4997 40 1 -0.8189 -4.3964 -1.7637 41 1 -0.2188 -2.0287 -2.0217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057661503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:13 Heat of formation + Delta-G solvation = 29.732871 kcal Electronic energy + Delta-G solvation = -20646.999998 eV Core-core repulsion = 17683.356933 eV Total energy + Delta-G solvation = -2963.643065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.43229 -39.58127 -37.75359 -35.51759 -33.03233 -31.79463 -31.58695 -31.05248 -28.73889 -27.97416 -25.88683 -23.54804 -23.28357 -22.82085 -21.73359 -21.35658 -19.20051 -17.62889 -17.17595 -16.57039 -16.54275 -16.38098 -15.82068 -15.63596 -15.55456 -14.94027 -14.65059 -14.22805 -14.15774 -13.78475 -13.64044 -13.43306 -13.35027 -13.07608 -12.74773 -12.68064 -12.63839 -12.56567 -12.15898 -12.09943 -11.80908 -11.76214 -11.35865 -11.21512 -10.98586 -9.74806 -9.68218 -9.31062 -9.24072 -9.04186 -8.62176 -6.31046 0.46924 0.56522 0.98240 1.17882 1.37726 1.48759 1.54292 2.21407 2.67553 2.89348 3.39311 3.81966 3.89475 4.00822 4.20420 4.23726 4.30588 4.33893 4.41151 4.52623 4.57300 4.59082 4.67216 4.73995 4.77428 4.85535 4.87482 5.08285 5.13319 5.16933 5.18088 5.22154 5.40606 5.49319 5.61280 5.67270 5.73673 5.77235 5.96601 6.11395 6.14575 6.18091 6.28745 6.33584 6.41927 6.73707 6.96697 7.07112 8.35049 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.003264 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.436047 B = 8576.016685 C = 8878.847059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.543 5.543 3 C 0.093 3.907 4 C -0.086 4.086 5 C -0.124 4.124 6 C -0.129 4.129 7 C -0.129 4.129 8 C -0.131 4.131 9 C -0.117 4.117 10 C 0.125 3.875 11 C -0.193 4.193 12 C -0.086 4.086 13 C -0.191 4.191 14 C 0.080 3.920 15 C -0.504 4.504 16 H 0.072 0.928 17 C 0.035 3.965 18 N -0.826 5.826 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.244 4.244 24 C -0.080 4.080 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.121 0.879 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.287 0.713 40 H 0.094 0.906 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 17.260 4.797 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.267 5.267 3 C -0.033 4.033 4 C -0.087 4.087 5 C -0.142 4.142 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.149 4.149 9 C -0.135 4.135 10 C -0.001 4.001 11 C -0.194 4.194 12 C -0.105 4.105 13 C -0.211 4.211 14 C 0.078 3.922 15 C -0.534 4.534 16 H 0.091 0.909 17 C -0.179 4.179 18 N -0.452 5.452 19 Si 0.801 3.199 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.184 1.184 23 C -0.264 4.264 24 C -0.099 4.099 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.139 0.861 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.076 16.945 5.183 17.753 hybrid contribution -0.291 -0.778 -0.583 1.015 sum -1.367 16.167 4.600 16.864 Atomic orbital electron populations 1.22371 0.87516 1.01742 1.00297 1.61988 1.08362 1.12497 1.43856 1.21082 1.00690 0.87712 0.93862 1.19871 0.95400 0.97596 0.95829 1.21246 0.96248 0.97972 0.98756 1.21413 1.00384 0.99872 0.92986 1.21461 0.94383 0.99365 0.99523 1.21424 0.97862 0.97810 0.97784 1.21216 1.00062 0.99036 0.93208 1.20679 0.99340 0.89465 0.90619 1.19262 0.97017 0.94893 1.08264 1.20719 0.98285 0.93171 0.98299 1.21248 0.99786 0.94736 1.05304 1.17945 0.92001 0.93529 0.88758 1.19824 0.94589 0.92504 1.46496 0.90936 1.26743 0.94056 1.04738 0.92411 1.69882 1.02473 1.37709 1.35183 0.85227 0.79289 0.76304 0.79075 1.18655 1.18988 1.18395 1.21143 1.02115 0.95082 1.08054 1.20629 0.95924 0.94378 0.98965 0.92846 0.91123 0.95070 0.89657 0.93348 0.85567 0.84151 0.84067 0.84569 0.86082 0.94426 0.90587 0.88041 0.88530 0.90224 0.88827 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 8.79 127.69 1.12 1.98 16 2 N -0.54 -16.65 4.74 -931.67 -4.42 -21.07 16 3 C 0.09 2.28 5.12 85.56 0.44 2.72 16 4 C -0.09 -2.07 4.88 -19.87 -0.10 -2.17 16 5 C -0.12 -2.63 7.92 22.27 0.18 -2.45 16 6 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 7 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 8 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 9 C -0.12 -2.74 9.70 22.27 0.22 -2.53 16 10 C 0.13 4.15 5.11 85.56 0.44 4.59 16 11 C -0.19 -8.17 4.91 -19.68 -0.10 -8.27 16 12 C -0.09 -4.08 9.67 22.22 0.21 -3.87 16 13 C -0.19 -10.41 8.70 22.73 0.20 -10.21 16 14 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 15 C -0.50 -28.18 9.05 23.46 0.21 -27.97 16 16 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 17 C 0.04 1.82 5.14 85.26 0.44 2.26 16 18 N -0.83 -44.43 10.97 21.83 0.24 -44.19 16 19 Si 0.98 39.27 29.59 68.60 2.03 41.30 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 23 C -0.24 -12.30 9.80 22.73 0.22 -12.08 16 24 C -0.08 -3.52 7.92 22.22 0.18 -3.34 16 25 H 0.05 1.87 6.16 -2.39 -0.01 1.85 16 26 H 0.07 1.95 5.91 -2.39 -0.01 1.93 16 27 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.09 1.96 7.87 -2.39 -0.02 1.94 16 29 H 0.05 1.07 8.06 -2.38 -0.02 1.05 16 30 H 0.13 2.36 8.00 -2.91 -0.02 2.33 16 31 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.14 2.18 8.06 -2.92 -0.02 2.16 16 34 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 35 H 0.04 1.15 8.06 -2.39 -0.02 1.13 16 36 H 0.08 2.36 7.87 -2.39 -0.02 2.34 16 37 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.10 5.53 6.18 -2.91 -0.02 5.51 16 39 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 40 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.11 4.16 8.02 -2.91 -0.02 4.14 16 Total: -1.00 -61.51 337.86 3.06 -58.45 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 1.00 Total: 29.25 kcal Atomic # 6 Polarization: -67.95 SS G_CDS: 4.21 Total: -63.74 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -4.18 Total: -65.26 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -61.51 3.06 -58.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.186 kcal (2) G-P(sol) polarization free energy of solvation -61.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds