Wall clock time and date at job start Tue Mar 31 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99858 * 2 1 4 4 C 1.50696 * 109.47317 * 293.95748 * 3 2 1 5 5 H 1.07992 * 120.00215 * 359.97438 * 4 3 2 6 6 C 1.37888 * 119.99750 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00069 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99829 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46580 * 90.00343 * 8 6 4 10 10 H 1.48491 * 109.47180 * 210.00194 * 8 6 4 11 11 H 1.48498 * 109.47223 * 330.00525 * 8 6 4 12 12 C 1.46895 * 111.00148 * 123.96107 * 2 1 3 13 13 C 1.50700 * 109.47428 * 66.04445 * 12 2 1 14 14 C 1.38036 * 120.06064 * 253.62389 * 13 12 2 15 15 C 1.38294 * 120.12201 * 179.72026 * 14 13 12 16 16 C 1.38343 * 120.24116 * 0.27598 * 15 14 13 17 17 C 1.37993 * 120.12602 * 0.02588 * 16 15 14 18 18 C 1.39318 * 120.06071 * 73.91539 * 13 12 2 19 19 C 1.48391 * 120.12043 * 0.02562 * 18 13 12 20 20 C 1.39336 * 120.11672 * 236.65145 * 19 18 13 21 21 C 1.38028 * 119.87300 * 179.74668 * 20 19 18 22 22 C 1.38319 * 120.11792 * 0.50827 * 21 20 19 23 23 C 1.38318 * 120.24992 * 359.76562 * 22 21 20 24 24 C 1.38019 * 120.12108 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47018 * 296.04402 * 1 2 3 26 26 H 1.09005 * 109.47538 * 56.03864 * 1 2 3 27 27 H 1.08995 * 109.47458 * 176.04389 * 1 2 3 28 28 H 1.09004 * 109.46881 * 53.96049 * 3 2 1 29 29 H 1.09003 * 109.46851 * 173.95297 * 3 2 1 30 30 H 0.96993 * 120.00166 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46700 * 306.03865 * 12 2 1 32 32 H 1.09003 * 109.47231 * 186.04690 * 12 2 1 33 33 H 1.08003 * 119.94046 * 359.97438 * 14 13 12 34 34 H 1.07999 * 119.88194 * 180.25621 * 15 14 13 35 35 H 1.08004 * 119.93725 * 179.97438 * 16 15 14 36 36 H 1.08001 * 120.06520 * 179.97438 * 17 16 15 37 37 H 1.07995 * 120.06334 * 359.97438 * 20 19 18 38 38 H 1.07993 * 119.93791 * 180.23292 * 21 20 19 39 39 H 1.08005 * 119.87701 * 179.75019 * 22 21 20 40 40 H 1.07995 * 119.94363 * 179.97438 * 23 22 21 41 41 H 1.07990 * 120.06580 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5114 -2.0487 6 6 2.0267 3.3497 -1.5283 7 7 2.7118 4.0020 -0.6148 8 14 1.5828 4.1871 -3.1380 9 1 0.2702 4.8670 -2.9966 10 1 2.6249 5.1886 -3.4787 11 1 1.5004 3.1714 -4.2181 12 6 1.9954 -0.7661 1.1374 13 6 1.6369 -2.2205 0.9726 14 6 0.6509 -2.7829 1.7580 15 6 0.3169 -4.1160 1.6039 16 6 0.9721 -4.8946 0.6666 17 6 1.9637 -4.3443 -0.1196 18 6 2.3043 -3.0015 0.0315 19 6 3.3700 -2.4041 -0.8108 20 6 3.2761 -2.4586 -2.1999 21 6 4.2677 -1.8967 -2.9786 22 6 5.3582 -1.2898 -2.3822 23 6 5.4593 -1.2379 -1.0037 24 6 4.4710 -1.7918 -0.2154 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3634 -1.0251 -0.0709 28 1 1.5611 1.9273 0.8310 29 1 3.0797 1.3444 0.1083 30 1 2.9864 4.9180 -0.7767 31 1 1.5611 -0.3873 2.0627 32 1 3.0797 -0.6612 1.1755 33 1 0.1365 -2.1797 2.4915 34 1 -0.4580 -4.5510 2.2176 35 1 0.7076 -5.9353 0.5506 36 1 2.4748 -4.9531 -0.8507 37 1 2.4273 -2.9362 -2.6665 38 1 4.1941 -1.9350 -4.0553 39 1 6.1338 -0.8550 -2.9952 40 1 6.3131 -0.7632 -0.5433 41 1 4.5506 -1.7504 0.8608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060356616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:28 Heat of formation + Delta-G solvation = 53.982288 kcal Electronic energy + Delta-G solvation = -21784.184612 eV Core-core repulsion = 18821.593081 eV Total energy + Delta-G solvation = -2962.591531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.77642 -37.96356 -36.25871 -32.78321 -32.30820 -31.17199 -30.40526 -28.69724 -27.10953 -26.50878 -23.90227 -23.07025 -22.09981 -21.27117 -20.67360 -19.83689 -16.95572 -16.34030 -15.91410 -15.33339 -15.08447 -14.87204 -14.41449 -14.18916 -13.93129 -13.67780 -13.33966 -13.04191 -12.98992 -12.43519 -12.30467 -12.05769 -11.87761 -11.58931 -11.31636 -11.06600 -10.92558 -10.84253 -10.69068 -10.60885 -10.39316 -10.33800 -9.78179 -9.18840 -8.88459 -8.58820 -8.43628 -8.39033 -7.88825 -7.15157 -5.98404 -3.98469 1.29434 1.58400 1.88752 2.02119 3.33463 3.39560 3.44449 3.91462 4.27396 4.46930 4.91392 5.03898 5.07997 5.17222 5.31314 5.34579 5.38595 5.39944 5.50609 5.55398 5.73241 5.83161 5.94077 6.00332 6.06516 6.17453 6.25566 6.32617 6.34511 6.41669 6.44970 6.63264 6.65304 6.78814 6.84238 6.88319 6.95395 7.05750 7.19503 7.34514 7.38558 7.44361 7.85094 8.13981 8.26396 8.60525 9.08790 9.64972 11.12609 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.006139 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.142313 B = 4559.990982 C = 5581.223113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.524 5.524 3 C 0.196 3.804 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.083 3.917 13 C -0.050 4.050 14 C -0.117 4.117 15 C -0.123 4.123 16 C -0.129 4.129 17 C -0.112 4.112 18 C -0.025 4.025 19 C -0.022 4.022 20 C -0.096 4.096 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.114 4.114 24 C -0.102 4.102 25 H 0.008 0.992 26 H 0.072 0.928 27 H 0.044 0.956 28 H -0.012 1.012 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 -15.982 1.884 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.248 5.248 3 C 0.071 3.929 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.045 4.045 13 C -0.051 4.051 14 C -0.136 4.136 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.130 4.130 18 C -0.026 4.026 19 C -0.022 4.022 20 C -0.114 4.114 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.132 4.132 24 C -0.120 4.120 25 H 0.027 0.973 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.005 0.995 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.047 -16.008 1.480 16.110 hybrid contribution -0.622 1.167 -0.066 1.324 sum 0.426 -14.841 1.414 14.914 Atomic orbital electron populations 1.22212 0.89132 0.99477 1.00227 1.62117 1.06633 1.17409 1.38667 1.19701 0.95303 0.81393 0.96472 1.21122 1.34407 0.96683 1.01596 0.92006 1.24957 0.95406 0.97362 0.96825 1.69955 1.38592 1.11352 1.34069 0.86548 0.77938 0.79244 0.84013 1.20836 1.21300 1.19810 1.21190 1.00924 0.89134 0.93249 1.20048 0.94919 0.95759 0.94339 1.21009 0.97608 0.95144 0.99837 1.21072 1.00038 0.94144 0.98896 1.20959 0.97160 0.99548 0.97019 1.21152 0.97903 0.94265 0.99661 1.18660 0.95773 0.92718 0.95424 1.18485 0.93105 0.97941 0.92668 1.20984 0.98109 0.99734 0.92597 1.20945 0.94460 0.98642 0.99359 1.21053 0.98306 0.99389 0.94874 1.20947 0.98972 0.99382 0.93924 1.21017 0.93848 0.97941 0.99199 0.97349 0.90895 0.93715 0.99452 0.95289 0.93054 0.95414 0.89928 0.86382 0.86542 0.86467 0.86250 0.86680 0.86576 0.86685 0.86488 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.17 60.06 0.55 1.33 16 2 N -0.52 -11.52 4.59 -245.83 -1.13 -12.65 16 3 C 0.20 5.18 4.72 -4.98 -0.02 5.15 16 4 C -0.50 -14.19 8.46 -34.44 -0.29 -14.48 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 8 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.08 1.55 4.40 -4.98 -0.02 1.53 16 13 C -0.05 -0.82 4.39 -104.29 -0.46 -1.27 16 14 C -0.12 -1.66 9.22 -39.63 -0.37 -2.03 16 15 C -0.12 -1.52 10.04 -39.52 -0.40 -1.91 16 16 C -0.13 -1.54 10.03 -39.63 -0.40 -1.94 16 17 C -0.11 -1.50 9.62 -39.25 -0.38 -1.88 16 18 C -0.03 -0.40 5.40 -104.90 -0.57 -0.96 16 19 C -0.02 -0.36 4.77 -104.90 -0.50 -0.86 16 20 C -0.10 -1.56 9.62 -39.25 -0.38 -1.93 16 21 C -0.12 -1.81 10.03 -39.63 -0.40 -2.20 16 22 C -0.12 -1.84 10.04 -39.52 -0.40 -2.23 16 23 C -0.11 -1.81 10.03 -39.63 -0.40 -2.21 16 24 C -0.10 -1.67 7.97 -39.25 -0.31 -1.98 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 27 H 0.04 0.82 6.94 -51.93 -0.36 0.46 16 28 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 29 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.03 0.51 7.92 -51.93 -0.41 0.10 16 32 H 0.08 1.56 4.97 -51.93 -0.26 1.30 16 33 H 0.12 1.54 7.99 -52.48 -0.42 1.12 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.12 1.76 7.01 -52.49 -0.37 1.39 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -30.92 339.74 -11.01 -41.94 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.89 Total: 1.26 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -4.83 Total: -26.41 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.39 Total: -38.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.92 -11.01 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060356616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.921 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds