Wall clock time and date at job start Tue Mar 31 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99858 * 2 1 4 4 C 1.50696 * 109.47317 * 293.95748 * 3 2 1 5 5 H 1.07992 * 120.00215 * 359.97438 * 4 3 2 6 6 C 1.37888 * 119.99750 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00069 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99829 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46580 * 90.00343 * 8 6 4 10 10 H 1.48491 * 109.47180 * 210.00194 * 8 6 4 11 11 H 1.48498 * 109.47223 * 330.00525 * 8 6 4 12 12 C 1.46895 * 111.00148 * 123.96107 * 2 1 3 13 13 C 1.50700 * 109.47428 * 66.04445 * 12 2 1 14 14 C 1.38036 * 120.06064 * 253.62389 * 13 12 2 15 15 C 1.38294 * 120.12201 * 179.72026 * 14 13 12 16 16 C 1.38343 * 120.24116 * 0.27598 * 15 14 13 17 17 C 1.37993 * 120.12602 * 0.02588 * 16 15 14 18 18 C 1.39318 * 120.06071 * 73.91539 * 13 12 2 19 19 C 1.48391 * 120.12043 * 0.02562 * 18 13 12 20 20 C 1.39336 * 120.11672 * 236.65145 * 19 18 13 21 21 C 1.38028 * 119.87300 * 179.74668 * 20 19 18 22 22 C 1.38319 * 120.11792 * 0.50827 * 21 20 19 23 23 C 1.38318 * 120.24992 * 359.76562 * 22 21 20 24 24 C 1.38019 * 120.12108 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47018 * 296.04402 * 1 2 3 26 26 H 1.09005 * 109.47538 * 56.03864 * 1 2 3 27 27 H 1.08995 * 109.47458 * 176.04389 * 1 2 3 28 28 H 1.09004 * 109.46881 * 53.96049 * 3 2 1 29 29 H 1.09003 * 109.46851 * 173.95297 * 3 2 1 30 30 H 0.96993 * 120.00166 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46700 * 306.03865 * 12 2 1 32 32 H 1.09003 * 109.47231 * 186.04690 * 12 2 1 33 33 H 1.08003 * 119.94046 * 359.97438 * 14 13 12 34 34 H 1.07999 * 119.88194 * 180.25621 * 15 14 13 35 35 H 1.08004 * 119.93725 * 179.97438 * 16 15 14 36 36 H 1.08001 * 120.06520 * 179.97438 * 17 16 15 37 37 H 1.07995 * 120.06334 * 359.97438 * 20 19 18 38 38 H 1.07993 * 119.93791 * 180.23292 * 21 20 19 39 39 H 1.08005 * 119.87701 * 179.75019 * 22 21 20 40 40 H 1.07995 * 119.94363 * 179.97438 * 23 22 21 41 41 H 1.07990 * 120.06580 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5114 -2.0487 6 6 2.0267 3.3497 -1.5283 7 7 2.7118 4.0020 -0.6148 8 14 1.5828 4.1871 -3.1380 9 1 0.2702 4.8670 -2.9966 10 1 2.6249 5.1886 -3.4787 11 1 1.5004 3.1714 -4.2181 12 6 1.9954 -0.7661 1.1374 13 6 1.6369 -2.2205 0.9726 14 6 0.6509 -2.7829 1.7580 15 6 0.3169 -4.1160 1.6039 16 6 0.9721 -4.8946 0.6666 17 6 1.9637 -4.3443 -0.1196 18 6 2.3043 -3.0015 0.0315 19 6 3.3700 -2.4041 -0.8108 20 6 3.2761 -2.4586 -2.1999 21 6 4.2677 -1.8967 -2.9786 22 6 5.3582 -1.2898 -2.3822 23 6 5.4593 -1.2379 -1.0037 24 6 4.4710 -1.7918 -0.2154 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3634 -1.0251 -0.0709 28 1 1.5611 1.9273 0.8310 29 1 3.0797 1.3444 0.1083 30 1 2.9864 4.9180 -0.7767 31 1 1.5611 -0.3873 2.0627 32 1 3.0797 -0.6612 1.1755 33 1 0.1365 -2.1797 2.4915 34 1 -0.4580 -4.5510 2.2176 35 1 0.7076 -5.9353 0.5506 36 1 2.4748 -4.9531 -0.8507 37 1 2.4273 -2.9362 -2.6665 38 1 4.1941 -1.9350 -4.0553 39 1 6.1338 -0.8550 -2.9952 40 1 6.3131 -0.7632 -0.5433 41 1 4.5506 -1.7504 0.8608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060356616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:28 Heat of formation + Delta-G solvation = 38.223909 kcal Electronic energy + Delta-G solvation = -21784.867947 eV Core-core repulsion = 18821.593081 eV Total energy + Delta-G solvation = -2963.274866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95166 -39.14582 -37.92175 -34.77295 -33.54907 -32.50955 -31.61863 -29.87931 -29.09405 -28.01954 -25.67423 -24.23794 -23.42698 -22.58866 -22.14789 -21.18676 -18.54565 -18.02181 -17.13996 -16.74812 -16.59766 -16.25687 -15.97271 -15.56276 -15.34889 -15.19438 -14.86380 -14.22081 -14.13671 -13.97716 -13.62740 -13.51858 -13.30379 -13.29739 -12.80357 -12.73088 -12.58612 -12.48743 -12.31265 -12.06754 -11.86738 -11.78248 -11.47887 -11.24667 -10.61049 -10.01563 -9.70432 -9.65880 -9.08888 -8.93369 -8.18960 -6.28015 0.16938 0.51207 0.64704 0.86316 1.39174 1.40482 1.52145 2.40129 2.81957 3.05125 3.13524 3.49553 3.78308 3.94149 4.05890 4.12853 4.20787 4.28592 4.33553 4.37663 4.50032 4.63401 4.65693 4.69192 4.73761 4.78065 4.83058 5.04365 5.05599 5.15646 5.18916 5.21495 5.25247 5.29746 5.57139 5.62089 5.65272 5.66595 5.70548 5.73039 5.87779 6.06565 6.14988 6.24818 6.35665 6.64081 6.87160 7.40860 8.92071 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.006139 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.142313 B = 4559.990982 C = 5581.223113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.527 5.527 3 C 0.216 3.784 4 C -0.514 4.514 5 H 0.059 0.941 6 C 0.004 3.996 7 N -0.934 5.934 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.087 3.913 13 C -0.072 4.072 14 C -0.124 4.124 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.042 4.042 19 C -0.031 4.031 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.129 4.129 24 C -0.120 4.120 25 H 0.009 0.991 26 H 0.055 0.945 27 H 0.068 0.932 28 H -0.043 1.043 29 H 0.000 1.000 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 -17.840 0.998 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.251 5.251 3 C 0.089 3.911 4 C -0.553 4.553 5 H 0.077 0.923 6 C -0.194 4.194 7 N -0.575 5.575 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.191 1.191 12 C -0.040 4.040 13 C -0.072 4.072 14 C -0.142 4.142 15 C -0.135 4.135 16 C -0.136 4.136 17 C -0.132 4.132 18 C -0.043 4.043 19 C -0.031 4.031 20 C -0.129 4.129 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.138 4.138 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.087 0.913 28 H -0.025 1.025 29 H 0.018 0.982 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.236 -17.889 0.602 17.900 hybrid contribution -0.227 1.650 0.282 1.689 sum -0.463 -16.239 0.884 16.269 Atomic orbital electron populations 1.22142 0.88054 1.00607 0.99463 1.62011 1.07576 1.14760 1.40724 1.19298 0.93374 0.83602 0.94780 1.21369 1.34505 0.97251 1.02134 0.92324 1.25846 0.95082 0.98018 1.00458 1.70081 1.39455 1.11791 1.36139 0.85455 0.77976 0.78148 0.79508 1.19836 1.20672 1.19070 1.21133 1.00186 0.90823 0.91866 1.19823 0.96980 0.94057 0.96367 1.21162 0.97047 0.96406 0.99604 1.21438 1.00186 0.93108 0.98797 1.21386 0.95625 1.01092 0.95543 1.21387 0.98310 0.93316 1.00211 1.18756 0.95967 0.93909 0.95649 1.18711 0.93345 0.97887 0.93179 1.21229 0.98763 1.00246 0.92699 1.21287 0.94192 0.98117 1.00608 1.21376 0.99069 0.99548 0.94995 1.21240 0.99457 0.99490 0.94515 1.21183 0.94461 0.98661 0.99474 0.97223 0.92627 0.91310 1.02518 0.98154 0.92788 0.95542 0.91013 0.85699 0.83360 0.83008 0.84699 0.85624 0.84416 0.84756 0.85298 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.88 9.17 127.69 1.17 3.05 16 2 N -0.53 -23.75 4.59 -931.65 -4.28 -28.03 16 3 C 0.22 11.88 4.72 85.56 0.40 12.28 16 4 C -0.51 -29.86 8.46 25.60 0.22 -29.64 16 5 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16 6 C 0.00 0.22 5.46 84.66 0.46 0.68 16 7 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 8 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 C 0.09 3.37 4.40 85.56 0.38 3.75 16 13 C -0.07 -2.30 4.39 -19.65 -0.09 -2.39 16 14 C -0.12 -3.27 9.22 22.24 0.20 -3.06 16 15 C -0.12 -2.45 10.04 22.31 0.22 -2.22 16 16 C -0.12 -2.37 10.03 22.24 0.22 -2.15 16 17 C -0.11 -2.79 9.62 22.48 0.22 -2.57 16 18 C -0.04 -1.30 5.40 -20.04 -0.11 -1.41 16 19 C -0.03 -1.04 4.77 -20.04 -0.10 -1.14 16 20 C -0.11 -3.57 9.62 22.48 0.22 -3.35 16 21 C -0.12 -3.80 10.03 22.24 0.22 -3.58 16 22 C -0.13 -4.10 10.04 22.31 0.22 -3.88 16 23 C -0.13 -4.21 10.03 22.24 0.22 -3.99 16 24 C -0.12 -4.06 7.97 22.48 0.18 -3.88 16 25 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.05 2.44 6.76 -2.38 -0.02 2.43 16 27 H 0.07 2.47 6.94 -2.39 -0.02 2.45 16 28 H -0.04 -2.56 8.12 -2.38 -0.02 -2.58 16 29 H 0.00 0.02 7.93 -2.39 -0.02 0.00 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.03 1.00 7.92 -2.38 -0.02 0.98 16 32 H 0.07 2.87 4.97 -2.39 -0.01 2.86 16 33 H 0.13 3.05 7.99 -2.91 -0.02 3.02 16 34 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 41 H 0.12 3.75 7.01 -2.92 -0.02 3.73 16 Total: -1.00 -67.48 339.74 3.31 -64.17 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.00 Total: 16.99 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 4.27 Total: -43.51 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -3.99 Total: -84.85 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -67.48 3.31 -64.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060356616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.397 kcal (2) G-P(sol) polarization free energy of solvation -67.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds