Wall clock time and date at job start Tue Mar 31 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47254 * 2 1 4 4 C 1.50706 * 109.47550 * 120.00134 * 2 1 3 5 5 C 1.39372 * 119.50146 * 66.31895 * 4 2 1 6 6 C 1.36096 * 120.98279 * 179.73200 * 5 4 2 7 7 C 1.40542 * 119.65454 * 0.56451 * 6 5 4 8 8 C 1.40535 * 121.28149 * 179.72124 * 7 6 5 9 9 C 1.36096 * 119.65530 * 180.02562 * 8 7 6 10 10 C 1.39375 * 120.98103 * 359.95782 * 9 8 7 11 11 C 1.36091 * 120.99302 * 0.02562 * 10 9 8 12 12 C 1.40530 * 119.65674 * 359.97438 * 11 10 9 13 13 C 1.36091 * 119.50129 * 246.60125 * 4 2 1 14 14 N 1.46504 * 109.47006 * 240.00176 * 2 1 3 15 15 C 1.36934 * 120.00081 * 125.78278 * 14 2 1 16 16 H 1.08007 * 119.99994 * 52.22406 * 15 14 2 17 17 C 1.38807 * 119.99698 * 232.22155 * 15 14 2 18 18 N 1.31623 * 119.99909 * 201.41586 * 17 15 14 19 19 Si 1.86794 * 120.00387 * 21.41645 * 17 15 14 20 20 H 1.48509 * 109.47250 * 95.16331 * 19 17 15 21 21 H 1.48501 * 109.47374 * 215.16353 * 19 17 15 22 22 H 1.48497 * 109.46977 * 335.16749 * 19 17 15 23 23 C 1.46503 * 119.99909 * 305.78007 * 14 2 1 24 24 C 1.52995 * 117.51768 * 177.49691 * 23 14 2 25 25 C 1.52998 * 60.00187 * 107.48057 * 24 23 14 26 26 H 1.09007 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47087 * 299.99534 * 1 2 3 28 28 H 1.09001 * 109.47440 * 60.00347 * 1 2 3 29 29 H 1.07999 * 119.50967 * 0.02562 * 5 4 2 30 30 H 1.07998 * 120.17325 * 180.24131 * 6 5 4 31 31 H 1.08000 * 120.17406 * 0.02970 * 8 7 6 32 32 H 1.07993 * 119.50598 * 179.97438 * 9 8 7 33 33 H 1.08006 * 119.49962 * 180.02562 * 10 9 8 34 34 H 1.08004 * 120.16828 * 180.02562 * 11 10 9 35 35 H 1.07993 * 120.17523 * 359.94944 * 13 4 2 36 36 H 0.97002 * 120.00369 * 180.02562 * 18 17 15 37 37 H 1.08999 * 115.55308 * 31.79393 * 23 14 2 38 38 H 1.09002 * 117.50240 * 214.96694 * 24 23 14 39 39 H 1.09004 * 117.50227 * 359.97438 * 24 23 14 40 40 H 1.08996 * 117.50139 * 252.51251 * 25 24 23 41 41 H 1.09007 * 117.50146 * 107.48703 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8019 -2.0772 1.3760 6 6 2.2469 -2.7499 2.4723 7 6 2.9392 -2.0567 3.4799 8 6 3.4087 -2.7161 4.6287 9 6 4.0749 -2.0122 5.5842 10 6 4.3005 -0.6443 5.4411 11 6 3.8609 0.0273 4.3421 12 6 3.1690 -0.6659 3.3342 13 6 2.6993 -0.0066 2.1854 14 7 2.0182 -0.6906 -1.1962 15 6 2.9002 -0.0646 -2.0361 16 1 3.8060 0.3709 -1.6408 17 6 2.6300 0.0101 -3.3956 18 7 3.6097 0.2121 -4.2511 19 14 0.8762 -0.1761 -4.0110 20 1 0.2657 1.1671 -4.1801 21 1 0.8821 -0.8849 -5.3159 22 1 0.0866 -0.9583 -3.0263 23 6 1.5630 -2.0509 -1.4938 24 6 2.0629 -2.6964 -2.7877 25 6 2.6027 -3.1720 -1.4374 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.2663 -2.6115 0.6053 30 1 2.0643 -3.8099 2.5698 31 1 3.2417 -3.7759 4.7528 32 1 4.4342 -2.5212 6.4663 33 1 4.8323 -0.1093 6.2140 34 1 4.0434 1.0873 4.2447 35 1 2.8672 1.0529 2.0607 36 1 3.4209 0.2647 -5.2011 37 1 0.5490 -2.2883 -1.1721 38 1 1.3779 -3.3585 -3.3173 39 1 2.7304 -2.1089 -3.4181 40 1 3.6254 -2.8974 -1.1792 41 1 2.2726 -4.1469 -1.0785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063577420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:15 Heat of formation + Delta-G solvation = 97.230562 kcal Electronic energy + Delta-G solvation = -21968.612957 eV Core-core repulsion = 19007.896811 eV Total energy + Delta-G solvation = -2960.716145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14974 -38.02470 -36.10137 -33.72962 -32.39741 -32.16906 -29.85668 -29.11794 -28.22307 -24.27631 -23.46389 -22.94576 -21.66061 -21.61231 -21.07986 -19.15018 -17.08372 -16.97167 -16.48400 -15.83026 -15.17996 -14.68055 -14.43864 -14.03271 -13.61374 -13.42253 -13.23202 -13.10200 -12.91197 -12.64976 -12.52162 -12.02259 -11.88498 -11.49471 -11.31531 -10.98178 -10.93056 -10.70583 -10.58593 -10.55034 -10.28309 -10.08409 -9.69190 -9.67922 -9.51385 -9.11627 -8.36472 -8.15476 -7.57774 -6.53935 -6.08061 -3.67343 0.82664 1.32086 2.36137 3.29263 3.36544 3.46357 3.54460 4.40129 4.50448 4.80164 4.86099 4.93299 5.00547 5.10217 5.24077 5.29477 5.34020 5.44801 5.59423 5.69026 5.75159 5.85040 5.94221 5.98316 6.00785 6.09332 6.16669 6.22824 6.23910 6.38331 6.49251 6.51843 6.53174 6.60135 6.61393 6.67653 6.74996 6.93653 7.05743 7.08922 7.18388 7.34180 7.36829 8.04404 8.47524 8.98782 9.61751 10.11112 11.03356 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027240 B = 0.005044 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.666462 B = 5550.231600 C = 5756.863968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.200 3.800 3 H 0.083 0.917 4 C -0.062 4.062 5 C -0.085 4.085 6 C -0.123 4.123 7 C -0.057 4.057 8 C -0.106 4.106 9 C -0.130 4.130 10 C -0.128 4.128 11 C -0.104 4.104 12 C -0.048 4.048 13 C -0.113 4.113 14 N -0.561 5.561 15 C -0.286 4.286 16 H 0.070 0.930 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.875 3.125 20 H -0.294 1.294 21 H -0.296 1.296 22 H -0.253 1.253 23 C 0.121 3.879 24 C -0.208 4.208 25 C -0.210 4.210 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.265 0.735 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 -4.106 15.280 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.101 0.899 4 C -0.064 4.064 5 C -0.103 4.103 6 C -0.141 4.141 7 C -0.057 4.057 8 C -0.124 4.124 9 C -0.148 4.148 10 C -0.146 4.146 11 C -0.122 4.122 12 C -0.048 4.048 13 C -0.132 4.132 14 N -0.279 5.279 15 C -0.415 4.415 16 H 0.088 0.912 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.703 3.297 20 H -0.221 1.221 21 H -0.223 1.223 22 H -0.177 1.177 23 C 0.013 3.987 24 C -0.246 4.246 25 C -0.250 4.250 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.639 -4.034 15.074 16.023 hybrid contribution -0.701 -0.249 -0.609 0.961 sum -4.340 -4.283 14.465 15.698 Atomic orbital electron populations 1.22264 0.97418 1.01286 1.00951 1.19670 0.91712 0.95357 0.83905 0.89870 1.20544 0.95651 0.94303 0.95906 1.21040 0.98349 0.94328 0.96618 1.20936 0.99638 0.99215 0.94291 1.18058 0.99359 0.93026 0.95233 1.20977 0.98442 0.99364 0.93606 1.20721 1.00295 0.94499 0.99259 1.20733 1.01073 0.94628 0.98193 1.21018 0.97950 0.99608 0.93655 1.18081 0.98650 0.92919 0.95172 1.20886 0.99281 0.99734 0.93302 1.43551 1.51476 1.08893 1.23975 1.18537 0.99884 1.35063 0.88004 0.91219 1.25777 0.96847 0.95035 0.96507 1.69932 1.31322 1.49403 1.02357 0.86877 0.87473 0.77453 0.77922 1.22123 1.22323 1.17688 1.21163 0.93590 0.84655 0.99287 1.23529 1.04874 1.04064 0.92158 1.23399 1.01489 0.98580 1.01577 0.93174 0.93235 0.92366 0.85327 0.86304 0.86184 0.86654 0.86591 0.85953 0.85898 0.92533 0.89492 0.90989 0.85845 0.89269 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.95 37.15 0.33 -2.37 16 2 C 0.20 3.83 3.01 -69.08 -0.21 3.63 16 3 H 0.08 1.64 7.59 -51.93 -0.39 1.24 16 4 C -0.06 -1.09 4.93 -104.97 -0.52 -1.61 16 5 C -0.09 -1.42 7.87 -39.93 -0.31 -1.73 16 6 C -0.12 -1.85 9.77 -39.48 -0.39 -2.23 16 7 C -0.06 -0.86 5.74 -106.83 -0.61 -1.47 16 8 C -0.11 -1.36 9.77 -39.49 -0.39 -1.74 16 9 C -0.13 -1.52 9.95 -39.93 -0.40 -1.91 16 10 C -0.13 -1.52 9.95 -39.93 -0.40 -1.92 16 11 C -0.10 -1.39 9.77 -39.49 -0.39 -1.78 16 12 C -0.05 -0.75 5.74 -106.84 -0.61 -1.37 16 13 C -0.11 -1.86 9.36 -39.48 -0.37 -2.23 16 14 N -0.56 -12.57 1.97 -159.45 -0.31 -12.88 16 15 C -0.29 -7.66 9.14 -15.06 -0.14 -7.80 16 16 H 0.07 2.08 8.06 -52.48 -0.42 1.66 16 17 C 0.06 1.68 3.44 -17.43 -0.06 1.62 16 18 N -0.89 -26.13 13.97 55.49 0.78 -25.35 16 19 Si 0.88 21.40 25.30 -169.99 -4.30 17.10 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.25 -5.82 5.70 56.52 0.32 -5.50 16 23 C 0.12 2.50 1.88 -67.93 -0.13 2.37 16 24 C -0.21 -4.52 7.18 -26.73 -0.19 -4.71 16 25 C -0.21 -4.15 9.15 -26.73 -0.24 -4.40 16 26 H 0.05 0.81 6.29 -51.92 -0.33 0.48 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.13 2.11 4.66 -52.49 -0.24 1.87 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.12 1.84 7.91 -52.49 -0.41 1.43 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.09 1.66 6.03 -51.93 -0.31 1.34 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.12 3.13 5.00 -51.93 -0.26 2.88 16 40 H 0.09 1.97 8.14 -51.93 -0.42 1.54 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -29.23 321.60 -9.83 -39.06 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.82 Total: 6.89 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -5.02 Total: -29.66 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.46 Total: -38.23 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.30 Total: 17.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.23 -9.83 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063577420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.292 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds