Wall clock time and date at job start Tue Mar 31 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47254 * 2 1 4 4 C 1.50706 * 109.47550 * 120.00134 * 2 1 3 5 5 C 1.39372 * 119.50146 * 66.31895 * 4 2 1 6 6 C 1.36096 * 120.98279 * 179.73200 * 5 4 2 7 7 C 1.40542 * 119.65454 * 0.56451 * 6 5 4 8 8 C 1.40535 * 121.28149 * 179.72124 * 7 6 5 9 9 C 1.36096 * 119.65530 * 180.02562 * 8 7 6 10 10 C 1.39375 * 120.98103 * 359.95782 * 9 8 7 11 11 C 1.36091 * 120.99302 * 0.02562 * 10 9 8 12 12 C 1.40530 * 119.65674 * 359.97438 * 11 10 9 13 13 C 1.36091 * 119.50129 * 246.60125 * 4 2 1 14 14 N 1.46504 * 109.47006 * 240.00176 * 2 1 3 15 15 C 1.36934 * 120.00081 * 125.78278 * 14 2 1 16 16 H 1.08007 * 119.99994 * 52.22406 * 15 14 2 17 17 C 1.38807 * 119.99698 * 232.22155 * 15 14 2 18 18 N 1.31623 * 119.99909 * 201.41586 * 17 15 14 19 19 Si 1.86794 * 120.00387 * 21.41645 * 17 15 14 20 20 H 1.48509 * 109.47250 * 95.16331 * 19 17 15 21 21 H 1.48501 * 109.47374 * 215.16353 * 19 17 15 22 22 H 1.48497 * 109.46977 * 335.16749 * 19 17 15 23 23 C 1.46503 * 119.99909 * 305.78007 * 14 2 1 24 24 C 1.52995 * 117.51768 * 177.49691 * 23 14 2 25 25 C 1.52998 * 60.00187 * 107.48057 * 24 23 14 26 26 H 1.09007 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47087 * 299.99534 * 1 2 3 28 28 H 1.09001 * 109.47440 * 60.00347 * 1 2 3 29 29 H 1.07999 * 119.50967 * 0.02562 * 5 4 2 30 30 H 1.07998 * 120.17325 * 180.24131 * 6 5 4 31 31 H 1.08000 * 120.17406 * 0.02970 * 8 7 6 32 32 H 1.07993 * 119.50598 * 179.97438 * 9 8 7 33 33 H 1.08006 * 119.49962 * 180.02562 * 10 9 8 34 34 H 1.08004 * 120.16828 * 180.02562 * 11 10 9 35 35 H 1.07993 * 120.17523 * 359.94944 * 13 4 2 36 36 H 0.97002 * 120.00369 * 180.02562 * 18 17 15 37 37 H 1.08999 * 115.55308 * 31.79393 * 23 14 2 38 38 H 1.09002 * 117.50240 * 214.96694 * 24 23 14 39 39 H 1.09004 * 117.50227 * 359.97438 * 24 23 14 40 40 H 1.08996 * 117.50139 * 252.51251 * 25 24 23 41 41 H 1.09007 * 117.50146 * 107.48703 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8019 -2.0772 1.3760 6 6 2.2469 -2.7499 2.4723 7 6 2.9392 -2.0567 3.4799 8 6 3.4087 -2.7161 4.6287 9 6 4.0749 -2.0122 5.5842 10 6 4.3005 -0.6443 5.4411 11 6 3.8609 0.0273 4.3421 12 6 3.1690 -0.6659 3.3342 13 6 2.6993 -0.0066 2.1854 14 7 2.0182 -0.6906 -1.1962 15 6 2.9002 -0.0646 -2.0361 16 1 3.8060 0.3709 -1.6408 17 6 2.6300 0.0101 -3.3956 18 7 3.6097 0.2121 -4.2511 19 14 0.8762 -0.1761 -4.0110 20 1 0.2657 1.1671 -4.1801 21 1 0.8821 -0.8849 -5.3159 22 1 0.0866 -0.9583 -3.0263 23 6 1.5630 -2.0509 -1.4938 24 6 2.0629 -2.6964 -2.7877 25 6 2.6027 -3.1720 -1.4374 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.2663 -2.6115 0.6053 30 1 2.0643 -3.8099 2.5698 31 1 3.2417 -3.7759 4.7528 32 1 4.4342 -2.5212 6.4663 33 1 4.8323 -0.1093 6.2140 34 1 4.0434 1.0873 4.2447 35 1 2.8672 1.0529 2.0607 36 1 3.4209 0.2647 -5.2011 37 1 0.5490 -2.2883 -1.1721 38 1 1.3779 -3.3585 -3.3173 39 1 2.7304 -2.1089 -3.4181 40 1 3.6254 -2.8974 -1.1792 41 1 2.2726 -4.1469 -1.0785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063577420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:15 Heat of formation + Delta-G solvation = 83.159635 kcal Electronic energy + Delta-G solvation = -21969.223118 eV Core-core repulsion = 19007.896811 eV Total energy + Delta-G solvation = -2961.326307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28580 -39.53492 -37.40068 -35.18152 -34.25560 -33.41379 -31.36712 -30.30282 -29.49627 -26.10241 -24.79205 -24.13431 -23.22598 -22.74367 -22.51253 -20.79878 -18.84572 -18.22960 -17.70320 -17.12205 -16.59321 -16.51924 -15.54438 -15.34739 -15.15056 -14.96070 -14.58733 -14.43840 -14.20390 -14.06854 -13.83166 -13.53090 -13.24345 -13.03278 -12.77572 -12.62598 -12.45991 -12.13009 -11.97319 -11.86081 -11.76306 -11.54914 -11.46672 -11.20241 -10.82591 -10.77180 -10.39033 -9.30341 -8.69076 -8.39377 -8.19087 -5.78328 -0.24873 0.21759 1.25035 1.40070 1.45163 1.59207 2.19984 2.46378 2.99170 3.17445 3.37443 3.40914 3.76489 3.96899 4.07450 4.16073 4.20746 4.28084 4.36223 4.42601 4.46117 4.51263 4.57376 4.61685 4.68848 4.73622 4.89550 4.93446 4.97707 5.03483 5.13572 5.19259 5.25634 5.36003 5.41185 5.46204 5.50247 5.59005 5.65132 5.78123 5.89251 5.98557 6.05743 6.24311 6.28705 7.10354 7.61290 8.11698 8.94559 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027240 B = 0.005044 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.666462 B = 5550.231600 C = 5756.863968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.197 3.803 3 H 0.062 0.938 4 C -0.080 4.080 5 C -0.103 4.103 6 C -0.117 4.117 7 C -0.076 4.076 8 C -0.113 4.113 9 C -0.127 4.127 10 C -0.122 4.122 11 C -0.124 4.124 12 C -0.068 4.068 13 C -0.127 4.127 14 N -0.570 5.570 15 C -0.276 4.276 16 H 0.018 0.982 17 C 0.020 3.980 18 N -0.942 5.942 19 Si 0.935 3.065 20 H -0.300 1.300 21 H -0.301 1.301 22 H -0.224 1.224 23 C 0.118 3.882 24 C -0.226 4.226 25 C -0.190 4.190 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.131 0.869 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.264 0.736 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 -6.284 18.118 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.092 3.908 3 H 0.080 0.920 4 C -0.082 4.082 5 C -0.121 4.121 6 C -0.135 4.135 7 C -0.076 4.076 8 C -0.131 4.131 9 C -0.144 4.144 10 C -0.139 4.139 11 C -0.142 4.142 12 C -0.068 4.068 13 C -0.145 4.145 14 N -0.289 5.289 15 C -0.406 4.406 16 H 0.036 0.964 17 C -0.179 4.179 18 N -0.583 5.583 19 Si 0.761 3.239 20 H -0.228 1.228 21 H -0.228 1.228 22 H -0.146 1.146 23 C 0.012 3.988 24 C -0.264 4.264 25 C -0.230 4.230 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.149 0.851 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.324 -6.221 17.956 19.735 hybrid contribution 0.008 0.431 -1.264 1.336 sum -5.317 -5.790 16.691 18.450 Atomic orbital electron populations 1.22156 0.95066 1.02242 1.01537 1.19691 0.93477 0.94299 0.83346 0.91965 1.20370 0.97158 0.95145 0.95490 1.21034 0.99697 0.93765 0.97623 1.21248 0.98333 1.00437 0.93434 1.18391 0.99819 0.93007 0.96386 1.21306 0.98183 1.00759 0.92844 1.21180 0.98889 0.94455 0.99905 1.21163 0.99723 0.95117 0.97942 1.21245 0.98520 1.00472 0.93991 1.18320 0.99357 0.93739 0.95403 1.21014 0.99526 0.99971 0.94037 1.43579 1.51115 1.09910 1.24288 1.18231 0.99013 1.34593 0.88761 0.96404 1.26293 1.00141 0.95032 0.96432 1.70048 1.33493 1.52141 1.02595 0.85937 0.83093 0.77235 0.77644 1.22838 1.22774 1.14642 1.21390 0.95077 0.83739 0.98625 1.23485 1.05415 1.04939 0.92517 1.23309 0.99620 1.00090 0.99983 0.91920 0.90918 0.93467 0.85087 0.83573 0.83624 0.83335 0.83653 0.84910 0.85993 0.92695 0.86463 0.88191 0.89966 0.92442 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 8.95 71.98 0.64 -4.22 16 2 C 0.20 7.65 3.01 44.24 0.13 7.78 16 3 H 0.06 2.59 7.59 -2.39 -0.02 2.57 16 4 C -0.08 -2.81 4.93 -20.09 -0.10 -2.91 16 5 C -0.10 -3.27 7.87 22.04 0.17 -3.10 16 6 C -0.12 -3.25 9.77 22.33 0.22 -3.03 16 7 C -0.08 -2.16 5.74 -21.30 -0.12 -2.28 16 8 C -0.11 -2.51 9.77 22.33 0.22 -2.30 16 9 C -0.13 -2.46 9.95 22.05 0.22 -2.24 16 10 C -0.12 -2.51 9.95 22.04 0.22 -2.29 16 11 C -0.12 -3.16 9.77 22.33 0.22 -2.94 16 12 C -0.07 -2.09 5.74 -21.30 -0.12 -2.21 16 13 C -0.13 -4.26 9.36 22.33 0.21 -4.05 16 14 N -0.57 -25.85 1.97 -658.39 -1.30 -27.15 16 15 C -0.28 -15.54 9.14 84.03 0.77 -14.77 16 16 H 0.02 1.18 8.06 -2.91 -0.02 1.16 16 17 C 0.02 1.13 3.44 84.86 0.29 1.42 16 18 N -0.94 -58.06 13.97 21.65 0.30 -57.76 16 19 Si 0.93 44.83 25.30 68.60 1.74 46.57 16 20 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 21 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 22 H -0.22 -9.58 5.70 99.48 0.57 -9.01 16 23 C 0.12 4.72 1.88 44.99 0.08 4.80 16 24 C -0.23 -9.52 7.18 30.59 0.22 -9.30 16 25 C -0.19 -7.22 9.15 30.59 0.28 -6.94 16 26 H 0.06 1.84 6.29 -2.38 -0.01 1.83 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.13 3.97 4.66 -2.91 -0.01 3.96 16 30 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 31 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.12 3.89 7.91 -2.91 -0.02 3.87 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.12 4.02 6.03 -2.39 -0.01 4.00 16 38 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 39 H 0.08 4.26 5.00 -2.39 -0.01 4.24 16 40 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16 Total: -1.00 -67.20 321.60 5.17 -62.03 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.88 Total: 24.89 kcal Atomic # 6 Polarization: -52.14 SS G_CDS: 3.55 Total: -48.58 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -0.99 Total: -84.90 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.74 Total: 46.57 kcal Total: -67.20 5.17 -62.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063577420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.185 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds