Wall clock time and date at job start Tue Mar 31 2020 05:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46980 * 2 1 4 4 C 1.50691 * 109.47162 * 239.99929 * 2 1 3 5 5 C 1.39376 * 119.50918 * 295.05680 * 4 2 1 6 6 C 1.36091 * 120.99285 * 180.02562 * 5 4 2 7 7 C 1.40540 * 119.65327 * 359.97438 * 6 5 4 8 8 C 1.40545 * 121.28954 * 180.02562 * 7 6 5 9 9 C 1.36099 * 119.65025 * 179.97438 * 8 7 6 10 10 C 1.39372 * 120.99439 * 0.02562 * 9 8 7 11 11 C 1.36095 * 120.98408 * 0.02562 * 10 9 8 12 12 C 1.40534 * 119.65829 * 359.96027 * 11 10 9 13 13 C 1.36101 * 119.50547 * 114.78392 * 4 2 1 14 14 N 1.46500 * 109.46850 * 119.99806 * 2 1 3 15 15 C 1.36936 * 120.00270 * 234.24041 * 14 2 1 16 16 H 1.08002 * 120.00568 * 214.72287 * 15 14 2 17 17 C 1.38819 * 119.99712 * 34.71801 * 15 14 2 18 18 N 1.31618 * 119.99935 * 14.90048 * 17 15 14 19 19 Si 1.86800 * 119.99866 * 194.90438 * 17 15 14 20 20 H 1.48497 * 109.47242 * 59.99628 * 19 17 15 21 21 H 1.48497 * 109.46977 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46910 * 299.99765 * 19 17 15 23 23 C 1.46498 * 119.99921 * 54.24846 * 14 2 1 24 24 C 1.53000 * 117.49853 * 183.92760 * 23 14 2 25 25 C 1.52997 * 117.50194 * 115.26662 * 23 14 2 26 26 H 1.08996 * 109.47209 * 59.99570 * 1 2 3 27 27 H 1.09005 * 109.47136 * 300.00148 * 1 2 3 28 28 H 1.08997 * 109.47520 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.50105 * 0.02562 * 5 4 2 30 30 H 1.08001 * 120.17666 * 179.97438 * 6 5 4 31 31 H 1.07994 * 120.17656 * 359.95968 * 8 7 6 32 32 H 1.07997 * 119.50151 * 180.02562 * 9 8 7 33 33 H 1.07995 * 119.50515 * 179.97438 * 10 9 8 34 34 H 1.07996 * 120.16922 * 179.97438 * 11 10 9 35 35 H 1.07997 * 120.16791 * 359.97438 * 13 4 2 36 36 H 0.96998 * 119.99513 * 184.97819 * 18 17 15 37 37 H 1.09003 * 115.54570 * 329.59371 * 23 14 2 38 38 H 1.09002 * 117.49756 * 359.97438 * 24 23 14 39 39 H 1.08999 * 117.49952 * 145.01749 * 24 23 14 40 40 H 1.09005 * 117.49953 * 214.97537 * 25 23 14 41 41 H 1.08995 * 117.49837 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7768 -2.0712 -1.3898 6 6 2.2167 -2.7428 -2.4887 7 6 2.9393 -2.0567 -3.4798 8 6 3.4093 -2.7161 -4.6286 9 6 4.1052 -2.0189 -5.5677 10 6 4.3607 -0.6582 -5.4084 11 6 3.9221 0.0130 -4.3086 12 6 3.1998 -0.6732 -3.3174 13 6 2.7239 -0.0123 -2.1720 14 7 2.0183 -0.6906 1.1962 15 6 2.8999 -0.0645 2.0364 16 1 3.6653 -0.6365 2.5398 17 6 2.8099 1.3056 2.2410 18 7 1.7250 1.9556 1.8765 19 14 4.2285 2.2267 3.0337 20 1 5.4484 2.0675 2.2021 21 1 3.8855 3.6676 3.1397 22 1 4.4791 1.6770 4.3903 23 6 1.5635 -2.0511 1.4935 24 6 2.0368 -2.6837 2.8037 25 6 2.6100 -3.1670 1.4691 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.2214 -2.6007 -0.6298 30 1 2.0116 -3.7974 -2.5986 31 1 3.2194 -3.7704 -4.7653 32 1 4.4648 -2.5279 -6.4497 33 1 4.9157 -0.1286 -6.1685 34 1 4.1278 1.0674 -4.1984 35 1 2.9102 1.0429 -2.0374 36 1 1.6900 2.9219 1.9527 37 1 0.5583 -2.2962 1.1505 38 1 2.6869 -2.0878 3.4443 39 1 1.3432 -3.3453 3.3225 40 1 2.2931 -4.1464 1.1105 41 1 3.6367 -2.8889 1.2315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070694141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:18 Heat of formation + Delta-G solvation = 90.422419 kcal Electronic energy + Delta-G solvation = -21959.866953 eV Core-core repulsion = 18998.855584 eV Total energy + Delta-G solvation = -2961.011369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98715 -37.78062 -35.89915 -33.88966 -32.34906 -31.67377 -29.44345 -28.91354 -27.93527 -24.28786 -23.26015 -22.90740 -21.52005 -21.42755 -20.90710 -19.36977 -17.07260 -16.76783 -15.91939 -15.84047 -15.07573 -14.43440 -14.32211 -13.90129 -13.75956 -13.32701 -13.10209 -12.94538 -12.75554 -12.48152 -11.95413 -11.92787 -11.62193 -11.15586 -11.01743 -10.88113 -10.81831 -10.65428 -10.58350 -10.42111 -10.22304 -10.01397 -9.67866 -9.64471 -9.50910 -9.18361 -8.45948 -8.01252 -7.42178 -6.63223 -5.86865 -3.42136 0.95872 1.45930 2.50269 3.33240 3.39330 3.41369 3.44327 4.39559 4.57184 4.88184 4.94857 5.10186 5.19704 5.25282 5.30962 5.43868 5.49737 5.63937 5.74774 5.82294 5.88321 5.95326 6.08755 6.12139 6.14916 6.37781 6.40998 6.44149 6.45258 6.50313 6.60315 6.66861 6.71236 6.74531 6.81025 6.98134 7.04444 7.09432 7.14432 7.22128 7.43680 7.56582 7.63649 7.74113 8.41079 9.11844 9.72395 10.27303 11.15173 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017001 B = 0.005955 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.522281 B = 4700.490131 C = 5474.425074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.213 3.787 3 H 0.113 0.887 4 C -0.062 4.062 5 C -0.086 4.086 6 C -0.127 4.127 7 C -0.060 4.060 8 C -0.106 4.106 9 C -0.133 4.133 10 C -0.130 4.130 11 C -0.105 4.105 12 C -0.047 4.047 13 C -0.115 4.115 14 N -0.542 5.542 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.013 3.987 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.281 1.281 23 C 0.125 3.875 24 C -0.193 4.193 25 C -0.226 4.226 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.256 0.744 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -6.495 -10.460 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.106 3.894 3 H 0.130 0.870 4 C -0.064 4.064 5 C -0.104 4.104 6 C -0.145 4.145 7 C -0.060 4.060 8 C -0.124 4.124 9 C -0.151 4.151 10 C -0.148 4.148 11 C -0.123 4.123 12 C -0.047 4.047 13 C -0.134 4.134 14 N -0.257 5.257 15 C -0.384 4.384 16 H 0.082 0.918 17 C -0.187 4.187 18 N -0.533 5.533 19 Si 0.729 3.271 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.207 1.207 23 C 0.016 3.984 24 C -0.231 4.231 25 C -0.267 4.267 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.395 -6.254 -10.347 12.097 hybrid contribution 0.910 0.386 0.409 1.069 sum 1.304 -5.868 -9.938 11.615 Atomic orbital electron populations 1.22046 0.97418 0.99325 1.01343 1.19499 0.91919 0.97388 0.80564 0.86975 1.20941 0.94924 0.94189 0.96394 1.21052 0.98324 0.94581 0.96442 1.20911 0.99896 0.99098 0.94615 1.18031 0.99493 0.93136 0.95332 1.20954 0.98426 0.99245 0.93752 1.20683 1.00467 0.94595 0.99347 1.20703 1.01255 0.94683 0.98146 1.21027 0.97861 0.99595 0.93776 1.18121 0.98317 0.92976 0.95287 1.20916 0.99362 0.99806 0.93358 1.43366 1.50372 1.10365 1.21636 1.19003 1.06927 0.91077 1.21436 0.91783 1.25137 0.96418 0.98163 0.98983 1.70003 1.24880 1.07667 1.50737 0.86423 0.82291 0.78824 0.79586 1.20903 1.21482 1.20687 1.21044 0.93538 0.85738 0.98061 1.23092 1.04540 1.03818 0.91659 1.23453 1.01221 0.99549 1.02503 0.94459 0.90922 0.94989 0.85672 0.86535 0.86333 0.86807 0.86730 0.86047 0.86029 0.93397 0.89521 0.88332 0.90669 0.90926 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.92 37.16 0.33 -2.58 16 2 C 0.21 4.71 2.12 -69.09 -0.15 4.56 16 3 H 0.11 2.82 5.46 -51.93 -0.28 2.53 16 4 C -0.06 -1.23 4.93 -104.97 -0.52 -1.75 16 5 C -0.09 -1.54 7.91 -39.93 -0.32 -1.86 16 6 C -0.13 -2.06 9.77 -39.49 -0.39 -2.45 16 7 C -0.06 -0.98 5.74 -106.83 -0.61 -1.60 16 8 C -0.11 -1.46 9.77 -39.48 -0.39 -1.85 16 9 C -0.13 -1.69 9.95 -39.93 -0.40 -2.09 16 10 C -0.13 -1.70 9.95 -39.93 -0.40 -2.10 16 11 C -0.10 -1.56 9.77 -39.49 -0.39 -1.95 16 12 C -0.05 -0.81 5.74 -106.83 -0.61 -1.43 16 13 C -0.12 -2.19 9.37 -39.48 -0.37 -2.56 16 14 N -0.54 -12.70 2.67 -159.45 -0.43 -13.13 16 15 C -0.25 -6.63 8.52 -15.06 -0.13 -6.76 16 16 H 0.06 1.69 6.77 -52.49 -0.36 1.33 16 17 C 0.01 0.34 4.94 -17.43 -0.09 0.25 16 18 N -0.89 -23.97 11.13 55.49 0.62 -23.35 16 19 Si 0.90 21.01 29.58 -169.99 -5.03 15.98 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.13 2.56 3.96 -67.93 -0.27 2.29 16 24 C -0.19 -3.72 9.77 -26.69 -0.26 -3.99 16 25 C -0.23 -4.21 9.39 -26.69 -0.25 -4.46 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.65 8.03 -51.93 -0.42 1.24 16 28 H 0.03 0.59 6.18 -51.93 -0.32 0.27 16 29 H 0.13 2.18 4.74 -52.48 -0.25 1.93 16 30 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.12 2.24 7.90 -52.49 -0.41 1.82 16 36 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 37 H 0.09 1.66 5.91 -51.93 -0.31 1.36 16 38 H 0.10 2.10 6.53 -51.93 -0.34 1.76 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -27.38 327.92 -10.71 -38.10 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.63 Total: 7.76 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -5.19 Total: -30.30 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.19 Total: -36.48 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.38 -10.71 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070694141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.519 kcal (2) G-P(sol) polarization free energy of solvation -27.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds