Wall clock time and date at job start Tue Mar 31 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46893 * 109.47015 * 262.93073 * 3 2 1 5 5 C 1.46900 * 111.00201 * 61.40848 * 4 3 2 6 6 C 1.52995 * 109.47274 * 68.47280 * 5 4 3 7 7 C 1.53001 * 109.47136 * 185.38052 * 6 5 4 8 8 S 1.80996 * 109.47206 * 180.02562 * 7 6 5 9 9 C 1.76196 * 100.00324 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99901 * 0.02562 * 9 8 7 11 11 C 1.38791 * 120.00553 * 180.02562 * 9 8 7 12 12 N 1.31635 * 120.00627 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 119.99897 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47154 * 89.99854 * 13 11 9 15 15 H 1.48503 * 109.47057 * 210.00310 * 13 11 9 16 16 H 1.48499 * 109.46817 * 329.99848 * 13 11 9 17 17 C 1.46906 * 110.99780 * 185.36137 * 4 3 2 18 18 C 1.52998 * 109.46851 * 176.04705 * 17 4 3 19 19 C 1.53003 * 109.46932 * 179.97438 * 18 17 4 20 20 C 1.53001 * 109.47053 * 59.99826 * 19 18 17 21 21 C 1.52999 * 109.47074 * 299.99686 * 20 19 18 22 22 C 1.53001 * 109.47189 * 56.04497 * 17 4 3 23 23 H 4.40882 * 5.52118 * 180.02562 * 4 1 2 24 24 H 1.09002 * 109.46560 * 142.93021 * 3 2 1 25 25 H 1.08997 * 109.46763 * 22.93711 * 3 2 1 26 26 H 1.09002 * 109.47285 * 188.47982 * 5 4 3 27 27 H 1.09003 * 109.46612 * 308.47592 * 5 4 3 28 28 H 1.08993 * 109.47524 * 305.38745 * 6 5 4 29 29 H 1.09006 * 109.46698 * 65.38869 * 6 5 4 30 30 H 1.08993 * 109.47480 * 300.00720 * 7 6 5 31 31 H 1.09006 * 109.46660 * 60.00793 * 7 6 5 32 32 H 0.97000 * 120.00169 * 179.97438 * 12 11 9 33 33 H 1.08994 * 109.46635 * 296.04237 * 17 4 3 34 34 H 1.08998 * 109.47579 * 299.99397 * 18 17 4 35 35 H 1.09000 * 109.47584 * 59.99907 * 18 17 4 36 36 H 1.09001 * 109.47083 * 300.00142 * 19 18 17 37 37 H 1.08997 * 109.47477 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.46982 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47182 * 60.00654 * 20 19 18 40 40 H 1.08994 * 109.47446 * 300.00686 * 21 20 19 41 41 H 1.09000 * 109.47265 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.46693 * 300.00100 * 22 17 4 43 43 H 1.09001 * 109.46919 * 60.00199 * 22 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.1713 1.3744 5 6 2.6928 -0.9359 2.2323 6 6 3.4000 -2.2244 1.8077 7 6 2.8412 -3.4011 2.6102 8 16 3.6784 -4.9254 2.1084 9 6 2.8636 -6.0820 3.1585 10 1 2.0980 -5.7450 3.8417 11 6 3.2055 -7.4262 3.1079 12 7 2.5964 -8.2904 3.8920 13 14 4.5302 -8.0091 1.9267 14 1 5.8527 -7.9536 2.5997 15 1 4.2439 -9.4060 1.5122 16 1 4.5469 -7.1310 0.7293 17 6 4.5984 0.3042 1.3995 18 6 5.0610 0.5781 2.8319 19 6 6.5846 0.7159 2.8581 20 6 7.0074 1.8762 1.9549 21 6 6.5447 1.6022 0.5225 22 6 5.0206 1.4648 0.4964 23 1 -1.0500 -0.0002 -0.0001 24 1 3.0089 0.8208 -0.6195 25 1 3.0097 -0.9456 -0.4005 26 1 2.9382 -0.7118 3.2704 27 1 1.6148 -1.0635 2.1332 28 1 3.2325 -2.3975 0.7447 29 1 4.4695 -2.1310 1.9966 30 1 3.0087 -3.2281 3.6732 31 1 1.7718 -3.4945 2.4213 32 1 2.8352 -9.2299 3.8563 33 1 5.0532 -0.6192 1.0411 34 1 4.6062 1.5015 3.1904 35 1 4.7602 -0.2487 3.4753 36 1 7.0392 -0.2078 2.4998 37 1 6.9144 0.9105 3.8786 38 1 8.0929 1.9741 1.9733 39 1 6.5529 2.7998 2.3133 40 1 6.9992 0.6786 0.1643 41 1 6.8463 2.4286 -0.1211 42 1 4.6909 1.2696 -0.5240 43 1 4.5657 2.3882 0.8549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074989318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:51 Heat of formation + Delta-G solvation = 29.070976 kcal Electronic energy + Delta-G solvation = -19945.691917 eV Core-core repulsion = 17117.464102 eV Total energy + Delta-G solvation = -2828.227816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.81530 -36.77437 -33.48522 -32.44517 -32.31458 -30.94494 -29.38251 -27.20887 -25.70685 -24.36376 -22.62966 -22.26497 -20.72906 -19.40141 -17.94603 -17.47655 -16.63678 -15.52357 -15.14048 -14.96842 -14.83556 -14.53392 -14.20223 -13.98500 -13.89157 -13.45193 -12.87678 -12.68748 -12.60691 -12.19318 -12.12067 -11.71847 -11.56721 -11.48172 -11.22687 -11.12957 -11.04396 -10.77571 -10.59051 -10.58479 -10.35275 -10.27720 -10.04530 -9.91416 -9.84121 -9.01134 -8.60348 -8.23690 -6.95029 -6.28667 -4.00988 2.70511 2.87873 3.01173 3.28831 3.44144 3.58035 3.93856 4.30900 4.38941 4.54461 4.59828 4.77714 4.81058 5.05132 5.08682 5.10252 5.18325 5.22484 5.29747 5.33833 5.37717 5.42253 5.44889 5.54708 5.57893 5.66720 5.78065 5.85414 5.92340 5.95413 5.99853 6.03301 6.06002 6.08752 6.14053 6.25774 6.33979 6.42068 6.61410 6.96677 7.03931 7.64447 7.95203 8.44276 9.17307 10.80914 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.004233 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.865346 B = 6613.017228 C = 7635.399343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.151 3.849 4 N -0.528 5.528 5 C 0.054 3.946 6 C -0.137 4.137 7 C -0.077 4.077 8 S -0.220 6.220 9 C -0.501 4.501 10 H 0.088 0.912 11 C 0.092 3.908 12 N -0.882 5.882 13 Si 0.861 3.139 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.239 1.239 17 C 0.081 3.919 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.116 4.116 23 H 0.216 0.784 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.270 0.730 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.945 21.528 -6.851 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.175 4.175 3 C 0.025 3.975 4 N -0.250 5.250 5 C -0.075 4.075 6 C -0.177 4.177 7 C -0.226 4.226 8 S 0.008 5.992 9 C -0.649 4.649 10 H 0.106 0.894 11 C -0.116 4.116 12 N -0.519 5.519 13 Si 0.686 3.314 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.163 1.163 17 C -0.027 4.027 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.154 4.154 23 H 0.233 0.767 24 H 0.116 0.884 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.553 21.605 -7.369 23.492 hybrid contribution -0.393 -1.225 0.255 1.311 sum 5.161 20.380 -7.113 22.194 Atomic orbital electron populations 1.24856 0.95877 1.01632 0.99756 1.22790 0.94136 0.99900 1.00648 1.19151 0.85123 1.01742 0.91472 1.62359 1.10965 1.43367 1.08345 1.22325 1.00209 0.87555 0.97458 1.21979 1.00861 0.94400 1.00462 1.22951 1.02004 0.95947 1.01666 1.84127 1.55637 1.02458 1.56987 1.22118 1.25178 0.93319 1.24243 0.89426 1.24790 0.96017 0.95562 0.95229 1.69940 1.41252 1.03081 1.37626 0.86675 0.82232 0.79398 0.83059 1.19381 1.20092 1.16269 1.21702 0.86539 0.97826 0.96595 1.21586 0.95218 1.02550 0.95606 1.21530 0.95747 0.98774 0.99697 1.21541 1.00315 0.98621 0.95184 1.21531 0.95512 1.01683 0.96917 1.21698 0.95645 0.98910 0.99115 0.76748 0.88391 0.91949 0.90139 0.90472 0.91658 0.91188 0.91425 0.91496 0.91984 0.92974 0.91265 0.91373 0.91835 0.91806 0.92233 0.92021 0.91944 0.91981 0.91943 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.37 19.25 29.55 0.57 -1.80 16 2 C -0.17 -2.22 12.08 -37.12 -0.45 -2.67 16 3 C 0.15 1.74 4.95 -6.61 -0.03 1.71 16 4 N -0.53 -6.23 4.60 -230.14 -1.06 -7.29 16 5 C 0.05 0.72 4.70 -3.83 -0.02 0.70 16 6 C -0.14 -2.13 4.41 -26.73 -0.12 -2.25 16 7 C -0.08 -1.51 5.67 37.16 0.21 -1.30 16 8 S -0.22 -5.41 19.41 -107.50 -2.09 -7.50 16 9 C -0.50 -14.71 10.04 30.94 0.31 -14.40 16 10 H 0.09 2.74 8.03 -52.49 -0.42 2.32 16 11 C 0.09 2.72 5.50 -17.43 -0.10 2.62 16 12 N -0.88 -26.97 13.97 55.49 0.78 -26.20 16 13 Si 0.86 21.73 27.74 -169.99 -4.72 17.01 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 17 C 0.08 0.86 1.43 -67.71 -0.10 0.76 16 18 C -0.11 -1.15 4.96 -26.73 -0.13 -1.28 16 19 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.12 -0.95 5.92 -26.70 -0.16 -1.10 16 22 C -0.12 -1.03 4.86 -26.70 -0.13 -1.16 16 23 H 0.22 1.79 7.80 -54.09 -0.42 1.37 16 24 H 0.10 0.95 5.93 -51.93 -0.31 0.64 16 25 H 0.06 0.75 6.40 -51.93 -0.33 0.42 16 26 H 0.08 1.05 6.56 -51.93 -0.34 0.71 16 27 H 0.08 1.10 6.87 -51.93 -0.36 0.75 16 28 H 0.06 1.04 6.39 -51.93 -0.33 0.71 16 29 H 0.07 1.08 6.66 -51.93 -0.35 0.73 16 30 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 31 H 0.07 1.35 8.14 -51.91 -0.42 0.92 16 32 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.05 0.62 6.35 -51.93 -0.33 0.29 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.77 6.51 -51.93 -0.34 0.44 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.52 6.23 -51.93 -0.32 0.20 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -31.13 345.76 -9.56 -40.69 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.23 Total: 0.59 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -0.46 Total: -22.51 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: -0.28 Total: -33.49 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.01 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -2.09 Total: -7.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.13 -9.56 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074989318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.760 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds