Wall clock time and date at job start Tue Mar 31 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46893 * 109.47015 * 262.93073 * 3 2 1 5 5 C 1.46900 * 111.00201 * 61.40848 * 4 3 2 6 6 C 1.52995 * 109.47274 * 68.47280 * 5 4 3 7 7 C 1.53001 * 109.47136 * 185.38052 * 6 5 4 8 8 S 1.80996 * 109.47206 * 180.02562 * 7 6 5 9 9 C 1.76196 * 100.00324 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99901 * 0.02562 * 9 8 7 11 11 C 1.38791 * 120.00553 * 180.02562 * 9 8 7 12 12 N 1.31635 * 120.00627 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 119.99897 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47154 * 89.99854 * 13 11 9 15 15 H 1.48503 * 109.47057 * 210.00310 * 13 11 9 16 16 H 1.48499 * 109.46817 * 329.99848 * 13 11 9 17 17 C 1.46906 * 110.99780 * 185.36137 * 4 3 2 18 18 C 1.52998 * 109.46851 * 176.04705 * 17 4 3 19 19 C 1.53003 * 109.46932 * 179.97438 * 18 17 4 20 20 C 1.53001 * 109.47053 * 59.99826 * 19 18 17 21 21 C 1.52999 * 109.47074 * 299.99686 * 20 19 18 22 22 C 1.53001 * 109.47189 * 56.04497 * 17 4 3 23 23 H 4.40882 * 5.52118 * 180.02562 * 4 1 2 24 24 H 1.09002 * 109.46560 * 142.93021 * 3 2 1 25 25 H 1.08997 * 109.46763 * 22.93711 * 3 2 1 26 26 H 1.09002 * 109.47285 * 188.47982 * 5 4 3 27 27 H 1.09003 * 109.46612 * 308.47592 * 5 4 3 28 28 H 1.08993 * 109.47524 * 305.38745 * 6 5 4 29 29 H 1.09006 * 109.46698 * 65.38869 * 6 5 4 30 30 H 1.08993 * 109.47480 * 300.00720 * 7 6 5 31 31 H 1.09006 * 109.46660 * 60.00793 * 7 6 5 32 32 H 0.97000 * 120.00169 * 179.97438 * 12 11 9 33 33 H 1.08994 * 109.46635 * 296.04237 * 17 4 3 34 34 H 1.08998 * 109.47579 * 299.99397 * 18 17 4 35 35 H 1.09000 * 109.47584 * 59.99907 * 18 17 4 36 36 H 1.09001 * 109.47083 * 300.00142 * 19 18 17 37 37 H 1.08997 * 109.47477 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.46982 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47182 * 60.00654 * 20 19 18 40 40 H 1.08994 * 109.47446 * 300.00686 * 21 20 19 41 41 H 1.09000 * 109.47265 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.46693 * 300.00100 * 22 17 4 43 43 H 1.09001 * 109.46919 * 60.00199 * 22 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.1713 1.3744 5 6 2.6928 -0.9359 2.2323 6 6 3.4000 -2.2244 1.8077 7 6 2.8412 -3.4011 2.6102 8 16 3.6784 -4.9254 2.1084 9 6 2.8636 -6.0820 3.1585 10 1 2.0980 -5.7450 3.8417 11 6 3.2055 -7.4262 3.1079 12 7 2.5964 -8.2904 3.8920 13 14 4.5302 -8.0091 1.9267 14 1 5.8527 -7.9536 2.5997 15 1 4.2439 -9.4060 1.5122 16 1 4.5469 -7.1310 0.7293 17 6 4.5984 0.3042 1.3995 18 6 5.0610 0.5781 2.8319 19 6 6.5846 0.7159 2.8581 20 6 7.0074 1.8762 1.9549 21 6 6.5447 1.6022 0.5225 22 6 5.0206 1.4648 0.4964 23 1 -1.0500 -0.0002 -0.0001 24 1 3.0089 0.8208 -0.6195 25 1 3.0097 -0.9456 -0.4005 26 1 2.9382 -0.7118 3.2704 27 1 1.6148 -1.0635 2.1332 28 1 3.2325 -2.3975 0.7447 29 1 4.4695 -2.1310 1.9966 30 1 3.0087 -3.2281 3.6732 31 1 1.7718 -3.4945 2.4213 32 1 2.8352 -9.2299 3.8563 33 1 5.0532 -0.6192 1.0411 34 1 4.6062 1.5015 3.1904 35 1 4.7602 -0.2487 3.4753 36 1 7.0392 -0.2078 2.4998 37 1 6.9144 0.9105 3.8786 38 1 8.0929 1.9741 1.9733 39 1 6.5529 2.7998 2.3133 40 1 6.9992 0.6786 0.1643 41 1 6.8463 2.4286 -0.1211 42 1 4.6909 1.2696 -0.5240 43 1 4.5657 2.3882 0.8549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074989318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:51 Heat of formation + Delta-G solvation = 11.678681 kcal Electronic energy + Delta-G solvation = -19946.446104 eV Core-core repulsion = 17117.464102 eV Total energy + Delta-G solvation = -2828.982002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70265 -37.62690 -34.72167 -34.59593 -33.35346 -31.70650 -30.21407 -28.35831 -27.89297 -25.45076 -23.64466 -23.16780 -21.55675 -20.31045 -19.62760 -18.82276 -17.56040 -17.14893 -16.68511 -16.18829 -15.86864 -15.75124 -15.25306 -14.96574 -14.80121 -14.75295 -14.43450 -14.12411 -13.60838 -13.48291 -13.09349 -13.00711 -12.94463 -12.71717 -12.62683 -12.51795 -12.11200 -11.94723 -11.83410 -11.72491 -11.50806 -11.35867 -11.19454 -11.13417 -10.97031 -10.71058 -10.63878 -9.26696 -9.02966 -8.54455 -6.26383 1.09714 1.29273 1.44704 1.71308 1.78083 1.95584 2.22149 2.65174 2.83540 3.01424 3.53156 3.77610 3.82943 3.90823 4.00596 4.13288 4.23315 4.28350 4.36915 4.41674 4.44788 4.50311 4.57805 4.66009 4.68433 4.70482 4.75598 4.86631 4.98599 5.03083 5.10405 5.15257 5.22764 5.25250 5.32493 5.33612 5.39345 5.42458 5.60608 5.67117 5.99238 6.07266 6.11511 6.73964 6.89469 8.58876 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.004233 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.865346 B = 6613.017228 C = 7635.399343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.151 3.849 4 N -0.525 5.525 5 C 0.064 3.936 6 C -0.121 4.121 7 C -0.065 4.065 8 S -0.221 6.221 9 C -0.524 4.524 10 H 0.049 0.951 11 C 0.040 3.960 12 N -0.922 5.922 13 Si 0.926 3.074 14 H -0.260 1.260 15 H -0.262 1.262 16 H -0.231 1.231 17 C 0.081 3.919 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.111 4.111 23 H 0.241 0.759 24 H 0.117 0.883 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.277 0.723 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.157 23.087 -8.304 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.209 4.209 3 C 0.025 3.975 4 N -0.247 5.247 5 C -0.065 4.065 6 C -0.161 4.161 7 C -0.214 4.214 8 S 0.007 5.993 9 C -0.671 4.671 10 H 0.067 0.933 11 C -0.165 4.165 12 N -0.560 5.560 13 Si 0.747 3.253 14 H -0.185 1.185 15 H -0.186 1.186 16 H -0.154 1.154 17 C -0.027 4.027 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.149 4.149 23 H 0.258 0.742 24 H 0.135 0.865 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.762 23.178 -8.820 25.704 hybrid contribution -0.874 -1.621 0.769 1.996 sum 5.888 21.556 -8.051 23.752 Atomic orbital electron populations 1.25641 0.96833 1.00603 0.98655 1.23264 0.95009 1.00933 1.01718 1.19230 0.84836 1.02177 0.91298 1.62402 1.11840 1.41922 1.08538 1.22164 0.99380 0.86889 0.98109 1.21876 1.01081 0.93587 0.99557 1.23014 1.01279 0.94783 1.02289 1.83801 1.55825 1.03660 1.55991 1.22332 1.24961 0.95094 1.24733 0.93288 1.25771 0.98283 0.95560 0.96909 1.70039 1.42904 1.03794 1.39272 0.85715 0.79233 0.79497 0.80898 1.18456 1.18601 1.15427 1.21764 0.85523 0.98159 0.97219 1.21562 0.96122 1.01969 0.95113 1.21525 0.94755 0.99022 1.00368 1.21532 1.00938 0.98113 0.94832 1.21530 0.94672 1.02064 0.97187 1.21672 0.96360 0.97939 0.98937 0.74216 0.86502 0.92599 0.89714 0.91327 0.91806 0.90783 0.91545 0.92140 0.91344 0.94152 0.91116 0.92824 0.92693 0.91349 0.91328 0.91544 0.92388 0.90529 0.91265 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.35 19.25 74.32 1.43 -2.92 16 2 C -0.21 -5.06 12.08 31.13 0.38 -4.69 16 3 C 0.15 3.25 4.95 84.50 0.42 3.67 16 4 N -0.52 -11.71 4.60 -882.02 -4.05 -15.76 16 5 C 0.06 1.67 4.70 86.30 0.41 2.07 16 6 C -0.12 -3.66 4.41 30.59 0.13 -3.53 16 7 C -0.06 -2.54 5.67 71.98 0.41 -2.13 16 8 S -0.22 -10.81 19.41 -56.49 -1.10 -11.91 16 9 C -0.52 -31.46 10.04 67.95 0.68 -30.77 16 10 H 0.05 3.21 8.03 -2.91 -0.02 3.18 16 11 C 0.04 2.35 5.50 84.85 0.47 2.82 16 12 N -0.92 -57.36 13.97 21.65 0.30 -57.06 16 13 Si 0.93 44.54 27.74 68.60 1.90 46.44 16 14 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.23 -10.74 6.74 99.48 0.67 -10.07 16 17 C 0.08 1.59 1.43 44.91 0.06 1.66 16 18 C -0.11 -2.12 4.96 30.59 0.15 -1.97 16 19 C -0.12 -2.00 5.92 30.60 0.18 -1.81 16 20 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 21 C -0.12 -1.58 5.92 30.61 0.18 -1.40 16 22 C -0.11 -1.73 4.86 30.61 0.15 -1.58 16 23 H 0.24 3.49 7.80 -4.42 -0.03 3.46 16 24 H 0.12 2.04 5.93 -2.39 -0.01 2.02 16 25 H 0.06 1.28 6.40 -2.39 -0.02 1.27 16 26 H 0.08 2.14 6.56 -2.39 -0.02 2.12 16 27 H 0.07 1.92 6.87 -2.39 -0.02 1.90 16 28 H 0.06 1.98 6.39 -2.39 -0.02 1.96 16 29 H 0.07 2.21 6.66 -2.38 -0.02 2.19 16 30 H 0.07 2.63 8.14 -2.40 -0.02 2.61 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.04 0.90 6.35 -2.39 -0.02 0.89 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.18 6.51 -2.39 -0.02 1.16 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.98 6.23 -2.39 -0.01 0.97 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -67.06 345.76 3.21 -63.85 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.92 Total: 16.44 kcal Atomic # 6 Polarization: -47.23 SS G_CDS: 5.23 Total: -42.00 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -3.75 Total: -72.82 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.44 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -1.10 Total: -11.91 kcal Total: -67.06 3.21 -63.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074989318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.526 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds