Wall clock time and date at job start Tue Mar 31 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46921 * 2 1 4 4 C 1.50694 * 109.47218 * 119.99979 * 2 1 3 5 5 H 1.07998 * 120.00153 * 119.99942 * 4 2 1 6 6 C 1.37877 * 120.00036 * 300.00233 * 4 2 1 7 7 N 1.31519 * 120.00214 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00070 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47214 * 90.00106 * 8 6 4 10 10 H 1.48504 * 109.47422 * 209.99855 * 8 6 4 11 11 H 1.48496 * 109.47077 * 329.99500 * 8 6 4 12 12 N 1.46897 * 109.46868 * 240.00016 * 2 1 3 13 13 C 1.46892 * 111.00216 * 306.04456 * 12 2 1 14 14 C 1.46906 * 111.00108 * 70.00354 * 12 2 1 15 15 C 1.52999 * 109.46904 * 169.99922 * 14 12 2 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 12 17 17 O 1.42906 * 109.46748 * 179.97438 * 16 15 14 18 18 C 1.35944 * 116.99735 * 179.97438 * 17 16 15 19 19 C 1.38704 * 120.03016 * 359.73236 * 18 17 16 20 20 C 1.38155 * 119.96883 * 179.79066 * 19 18 17 21 21 C 1.38450 * 120.03042 * 0.47548 * 20 19 18 22 22 F 1.35100 * 119.97365 * 179.72475 * 21 20 19 23 23 C 1.38454 * 120.05793 * 359.75682 * 21 20 19 24 24 C 1.38152 * 120.03445 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.47359 * 299.99721 * 1 2 3 26 26 H 1.09004 * 109.47410 * 59.99853 * 1 2 3 27 27 H 1.09004 * 109.46921 * 180.02562 * 1 2 3 28 28 H 0.96997 * 119.99911 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.47010 * 183.95794 * 13 12 2 30 30 H 1.08998 * 109.47527 * 303.95325 * 13 12 2 31 31 H 1.09001 * 109.47410 * 63.95283 * 13 12 2 32 32 H 1.08993 * 109.47034 * 49.99231 * 14 12 2 33 33 H 1.09000 * 109.46693 * 289.99572 * 14 12 2 34 34 H 1.08993 * 109.47839 * 59.99803 * 15 14 12 35 35 H 1.09000 * 109.47160 * 299.99365 * 15 14 12 36 36 H 1.09000 * 109.47050 * 299.99699 * 16 15 14 37 37 H 1.09001 * 109.46801 * 59.99811 * 16 15 14 38 38 H 1.08002 * 120.02096 * 359.97438 * 19 18 17 39 39 H 1.08000 * 119.98283 * 180.20788 * 20 19 18 40 40 H 1.08006 * 119.98639 * 179.97438 * 23 21 20 41 41 H 1.07995 * 120.01499 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5439 4.4118 10 1 1.3445 -0.9490 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4091 15 6 2.4884 -0.5257 -3.5973 16 6 2.2101 0.2966 -4.8572 17 8 2.8976 -0.2849 -5.9669 18 6 2.7543 0.3284 -7.1717 19 6 1.9639 1.4626 -7.2837 20 6 1.8227 2.0873 -8.5078 21 6 2.4618 1.5760 -9.6245 22 9 2.3184 2.1846 -10.8220 23 6 3.2472 0.4410 -9.5151 24 6 3.3938 -0.1831 -8.2913 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7089 1.1613 3.4844 29 1 1.8665 -2.5520 -2.1649 30 1 1.6466 -2.5988 -0.3992 31 1 0.3555 -1.9520 -1.4398 32 1 2.1024 1.1189 -2.2603 33 1 0.6814 0.1053 -2.6087 34 1 2.1389 -1.5473 -3.7460 35 1 3.5600 -0.5337 -3.3976 36 1 1.1385 0.3043 -5.0567 37 1 2.5594 1.3184 -4.7087 38 1 1.4614 1.8591 -6.4137 39 1 1.2100 2.9725 -8.5945 40 1 3.7449 0.0429 -10.3870 41 1 4.0062 -1.0686 -8.2064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079601978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:41 Heat of formation + Delta-G solvation = -57.657122 kcal Electronic energy + Delta-G solvation = -21096.714393 eV Core-core repulsion = 17698.512589 eV Total energy + Delta-G solvation = -3398.201804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.05130 -40.29893 -37.82451 -37.16519 -33.50833 -31.96000 -31.43448 -29.54575 -28.42793 -26.39892 -25.24064 -24.40904 -23.14804 -22.22006 -20.96430 -19.24469 -18.42068 -17.55249 -16.82158 -16.38713 -16.15341 -15.73279 -15.24812 -14.99536 -14.60650 -14.36413 -14.03064 -13.86739 -13.61742 -13.20547 -13.04258 -12.78932 -12.53391 -12.00064 -11.86963 -11.55205 -11.37193 -11.11076 -11.03469 -10.89223 -10.77410 -10.64360 -10.57699 -10.21412 -10.06742 -9.79851 -9.49504 -8.92643 -8.40131 -8.33740 -7.20451 -6.02926 -4.06484 0.85529 0.95025 2.96834 3.29307 3.30322 3.36681 3.40126 4.04369 4.38264 4.40316 4.48046 4.81151 4.83039 4.92418 4.99188 5.17353 5.25926 5.29232 5.41351 5.54651 5.60290 5.74072 5.83169 5.84738 5.93815 6.01176 6.15848 6.27748 6.38178 6.42683 6.49318 6.63602 6.78589 6.86536 7.08642 7.18108 7.42965 7.67797 7.81924 8.09944 8.34564 8.56375 8.99558 9.58649 11.04290 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.048400 B = 0.002451 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.368892 B =11421.183989 C =11705.512927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.534 5.534 13 C 0.032 3.968 14 C 0.059 3.941 15 C -0.114 4.114 16 C 0.059 3.941 17 O -0.310 6.310 18 C 0.129 3.871 19 C -0.183 4.183 20 C -0.111 4.111 21 C 0.051 3.949 22 F -0.144 7.144 23 C -0.113 4.113 24 C -0.128 4.128 25 H 0.088 0.912 26 H 0.006 0.994 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.017 0.983 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 0.343 -21.081 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.117 4.117 14 C -0.070 4.070 15 C -0.152 4.152 16 C -0.016 4.016 17 O -0.223 6.223 18 C 0.083 3.917 19 C -0.202 4.202 20 C -0.130 4.130 21 C 0.032 3.968 22 F -0.123 7.123 23 C -0.132 4.132 24 C -0.146 4.146 25 H 0.107 0.893 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.030 0.255 -20.852 20.952 hybrid contribution -0.876 0.065 0.637 1.085 sum 1.154 0.319 -20.215 20.251 Atomic orbital electron populations 1.22407 1.00821 0.99442 1.00448 1.19324 0.89777 0.94464 0.86008 0.94394 1.21105 1.30461 1.12505 0.89599 0.91920 1.24938 0.95243 0.95174 0.99043 1.69884 1.37109 1.23118 1.23412 0.86507 0.78510 0.79990 0.82439 1.20682 1.21394 1.19944 1.62296 1.58923 1.02506 1.02060 1.22280 0.96135 0.91940 1.01324 1.21877 0.96801 0.97831 0.90488 1.21580 1.03063 0.99563 0.91002 1.22959 0.96044 0.97849 0.84739 1.86115 1.68796 1.52596 1.14770 1.19095 0.94648 0.91756 0.86206 1.21217 1.02854 0.97320 0.98773 1.20954 0.99969 1.00757 0.91317 1.17570 1.02763 0.95296 0.81218 1.91482 1.94754 1.82571 1.43470 1.20946 0.99038 0.94793 0.98434 1.20315 1.02523 1.02111 0.89680 0.89336 0.97543 0.94962 0.93010 0.93693 0.90815 0.96505 0.91347 0.95558 0.90995 0.90091 0.92004 0.91699 0.84235 0.84514 0.84175 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.22 37.16 0.31 -3.76 16 2 C 0.21 5.17 2.31 -68.87 -0.16 5.01 16 3 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 4 C -0.50 -13.43 7.91 -34.44 -0.27 -13.70 16 5 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.53 -11.08 4.70 -236.29 -1.11 -12.19 16 13 C 0.03 0.60 8.45 60.06 0.51 1.11 16 14 C 0.06 0.99 4.53 -3.82 -0.02 0.97 16 15 C -0.11 -1.58 5.51 -26.73 -0.15 -1.72 16 16 C 0.06 0.68 4.74 37.16 0.18 0.86 16 17 O -0.31 -3.80 10.14 -19.56 -0.20 -4.00 16 18 C 0.13 1.42 6.69 -39.24 -0.26 1.15 16 19 C -0.18 -1.80 9.04 -39.44 -0.36 -2.16 16 20 C -0.11 -1.04 10.02 -39.53 -0.40 -1.43 16 21 C 0.05 0.50 7.30 -39.42 -0.29 0.22 16 22 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 23 C -0.11 -1.00 10.02 -39.53 -0.40 -1.40 16 24 C -0.13 -1.22 9.99 -39.44 -0.39 -1.61 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 26 H 0.01 0.12 6.91 -51.93 -0.36 -0.24 16 27 H 0.03 0.74 6.42 -51.93 -0.33 0.40 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.04 0.73 6.47 -51.93 -0.34 0.40 16 30 H 0.07 1.52 6.76 -51.93 -0.35 1.16 16 31 H 0.02 0.31 6.46 -51.93 -0.34 -0.02 16 32 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 33 H 0.03 0.44 7.06 -51.93 -0.37 0.07 16 34 H 0.07 1.00 6.55 -51.93 -0.34 0.66 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 37 H 0.06 0.68 7.68 -51.93 -0.40 0.29 16 38 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 41 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -28.58 332.22 -8.34 -36.92 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.89 Total: -0.80 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -1.79 Total: -15.01 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.48 Total: -36.76 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.20 Total: -4.00 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.58 -8.34 -36.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079601978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.737 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds