Wall clock time and date at job start Tue Mar 31 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46904 * 109.47015 * 119.99841 * 2 1 3 13 13 C 1.46892 * 111.00175 * 58.95371 * 12 2 1 14 14 C 1.46904 * 110.99976 * 294.99842 * 12 2 1 15 15 C 1.52996 * 109.47057 * 189.99688 * 14 12 2 16 16 C 1.53002 * 109.46903 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.46927 * 180.02562 * 16 15 14 18 18 C 1.35943 * 116.99818 * 179.97438 * 17 16 15 19 19 C 1.38708 * 120.03115 * 359.72898 * 18 17 16 20 20 C 1.38153 * 119.97134 * 179.78617 * 19 18 17 21 21 C 1.38458 * 120.02802 * 0.48888 * 20 19 18 22 22 F 1.35101 * 119.96811 * 179.72567 * 21 20 19 23 23 C 1.38459 * 120.05872 * 359.74137 * 21 20 19 24 24 C 1.38149 * 120.03173 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 27 27 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46847 * 59.99941 * 13 12 2 30 30 H 1.08994 * 109.47472 * 179.97438 * 13 12 2 31 31 H 1.09001 * 109.47178 * 300.00161 * 13 12 2 32 32 H 1.08998 * 109.47075 * 310.00200 * 14 12 2 33 33 H 1.09002 * 109.46658 * 69.99973 * 14 12 2 34 34 H 1.08998 * 109.47596 * 300.00193 * 15 14 12 35 35 H 1.09002 * 109.47154 * 60.00588 * 15 14 12 36 36 H 1.08995 * 109.47372 * 300.00024 * 16 15 14 37 37 H 1.09001 * 109.47189 * 60.00692 * 16 15 14 38 38 H 1.08006 * 120.01812 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.98720 * 180.20972 * 20 19 18 40 40 H 1.07998 * 119.97973 * 180.02562 * 23 21 20 41 41 H 1.07995 * 120.01596 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0392 2.4181 15 6 2.3788 -0.5662 3.6186 16 6 1.9919 0.1956 4.8879 17 8 2.6743 -0.3695 6.0092 18 6 2.4401 0.1957 7.2231 19 6 1.5758 1.2753 7.3311 20 6 1.3353 1.8459 8.5661 21 6 1.9642 1.3472 9.6942 22 9 1.7324 1.9097 10.9004 23 6 2.8308 0.2726 9.5871 24 6 3.0695 -0.3030 8.3541 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.9028 -0.5285 -4.4375 29 1 1.8763 -2.6150 0.3648 30 1 1.9060 -2.5657 2.1436 31 1 0.4385 -2.0742 1.2640 32 1 1.9297 1.0871 2.3125 33 1 0.5722 -0.0344 2.5726 34 1 2.0977 -1.6140 3.7243 35 1 3.4553 -0.4925 3.4642 36 1 2.2726 1.2435 4.7826 37 1 0.9154 0.1215 5.0423 38 1 1.0881 1.6671 6.4507 39 1 0.6598 2.6843 8.6509 40 1 3.3204 -0.1156 10.4680 41 1 3.7458 -1.1408 8.2709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079601981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:44 Heat of formation + Delta-G solvation = -48.025177 kcal Electronic energy + Delta-G solvation = -21175.619086 eV Core-core repulsion = 17777.834955 eV Total energy + Delta-G solvation = -3397.784132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.08880 -40.35232 -37.99116 -37.32506 -33.55020 -32.02616 -31.50760 -29.83654 -29.10610 -26.51761 -25.26284 -24.52426 -23.20734 -22.27581 -21.00122 -19.32927 -18.48396 -17.60241 -16.87838 -16.63898 -16.45993 -15.77542 -15.33235 -15.07162 -14.75215 -14.58576 -14.16168 -13.93249 -13.47358 -13.45179 -13.15266 -12.82224 -12.73052 -12.31369 -12.08354 -11.99540 -11.63163 -11.42532 -11.19145 -11.11174 -10.92807 -10.77863 -10.51945 -10.19913 -10.02628 -9.54498 -9.53752 -9.07213 -8.61814 -8.38377 -7.40684 -6.09491 -4.07867 0.81216 0.90622 2.90446 3.22413 3.24911 3.32286 3.35472 4.00228 4.34028 4.36286 4.43163 4.66158 4.76534 4.84057 4.92410 5.08846 5.18194 5.21616 5.29962 5.45327 5.52039 5.62647 5.78483 5.80543 5.82280 5.92675 6.03524 6.13083 6.16304 6.24728 6.31888 6.32807 6.41328 6.50638 6.68381 6.87349 7.12184 7.16955 7.57833 7.88372 8.02609 8.62160 8.97925 9.52281 11.03545 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041237 B = 0.002618 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.831221 B =10694.157363 C =11143.597232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.181 3.819 3 H 0.040 0.960 4 C -0.503 4.503 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.269 1.269 11 H -0.296 1.296 12 N -0.523 5.523 13 C 0.029 3.971 14 C 0.055 3.945 15 C -0.115 4.115 16 C 0.060 3.940 17 O -0.309 6.309 18 C 0.129 3.871 19 C -0.183 4.183 20 C -0.111 4.111 21 C 0.051 3.949 22 F -0.144 7.144 23 C -0.113 4.113 24 C -0.127 4.127 25 H 0.028 0.972 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.264 0.736 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 3.480 24.005 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.073 3.927 3 H 0.057 0.943 4 C -0.541 4.541 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.194 1.194 11 H -0.224 1.224 12 N -0.246 5.246 13 C -0.119 4.119 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.016 4.016 17 O -0.222 6.222 18 C 0.083 3.917 19 C -0.202 4.202 20 C -0.130 4.130 21 C 0.032 3.968 22 F -0.122 7.122 23 C -0.132 4.132 24 C -0.146 4.146 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.174 3.320 23.744 24.004 hybrid contribution -1.846 1.183 -0.068 2.194 sum -3.021 4.503 23.675 24.288 Atomic orbital electron populations 1.22827 1.01776 1.01065 0.98899 1.19793 0.88664 0.95328 0.88894 0.94258 1.20948 1.31587 1.13821 0.87791 0.89922 1.24928 0.95897 0.96597 0.95840 1.69879 1.45681 1.40312 0.97879 0.86882 0.80498 0.83924 0.76947 1.20820 1.19377 1.22401 1.62131 1.59286 1.02129 1.01054 1.22349 0.97028 0.90689 1.01839 1.21934 0.96579 0.98395 0.90464 1.21570 1.02883 1.00186 0.90639 1.22936 0.96154 0.98019 0.84464 1.86117 1.66183 1.56429 1.13486 1.19090 0.94379 0.92230 0.86043 1.21203 1.02085 0.98316 0.98587 1.20951 1.00168 1.00779 0.91131 1.17577 1.01652 0.96743 0.80814 1.91485 1.93663 1.84361 1.42740 1.20954 0.98310 0.95484 0.98429 1.20322 1.02434 1.02387 0.89411 0.95325 0.93674 0.92477 0.92610 0.90107 0.93313 0.96343 0.91272 0.95372 0.90764 0.89892 0.91733 0.92012 0.84296 0.84528 0.84131 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.94 7.98 37.16 0.30 -3.65 16 2 C 0.18 4.14 1.93 -68.86 -0.13 4.01 16 3 H 0.04 0.94 7.09 -51.93 -0.37 0.57 16 4 C -0.50 -13.76 8.52 -34.44 -0.29 -14.06 16 5 H 0.08 2.47 6.99 -52.49 -0.37 2.10 16 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 8 Si 0.89 21.55 24.37 -169.99 -4.14 17.41 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.27 -6.22 6.53 56.52 0.37 -5.85 16 11 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 12 N -0.52 -10.31 4.74 -236.29 -1.12 -11.43 16 13 C 0.03 0.53 8.70 60.06 0.52 1.06 16 14 C 0.06 0.85 4.40 -3.82 -0.02 0.83 16 15 C -0.11 -1.48 5.51 -26.73 -0.15 -1.63 16 16 C 0.06 0.64 4.74 37.16 0.18 0.81 16 17 O -0.31 -3.61 10.14 -19.56 -0.20 -3.81 16 18 C 0.13 1.35 6.69 -39.23 -0.26 1.09 16 19 C -0.18 -1.70 9.04 -39.44 -0.36 -2.06 16 20 C -0.11 -0.99 10.02 -39.53 -0.40 -1.39 16 21 C 0.05 0.49 7.30 -39.42 -0.29 0.20 16 22 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 23 C -0.11 -0.96 10.02 -39.53 -0.40 -1.36 16 24 C -0.13 -1.16 9.98 -39.44 -0.39 -1.56 16 25 H 0.03 0.52 6.75 -51.93 -0.35 0.16 16 26 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 27 H 0.06 1.19 6.38 -51.93 -0.33 0.86 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.08 1.67 6.53 -51.93 -0.34 1.33 16 30 H 0.05 0.76 6.30 -51.93 -0.33 0.43 16 31 H 0.02 0.33 6.28 -51.93 -0.33 0.00 16 32 H 0.07 1.04 8.00 -51.93 -0.42 0.63 16 33 H 0.03 0.42 6.94 -51.93 -0.36 0.06 16 34 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.62 7.65 -51.93 -0.40 0.23 16 37 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 38 H 0.14 1.10 6.30 -52.48 -0.33 0.76 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -29.98 324.51 -7.23 -37.22 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.69 Total: -0.71 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -1.79 Total: -15.84 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.35 Total: -37.74 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.20 Total: -3.81 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.98 -7.23 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079601981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.808 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds