Wall clock time and date at job start Tue Mar 31 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46904 * 109.47015 * 119.99841 * 2 1 3 13 13 C 1.46892 * 111.00175 * 58.95371 * 12 2 1 14 14 C 1.46904 * 110.99976 * 294.99842 * 12 2 1 15 15 C 1.52996 * 109.47057 * 189.99688 * 14 12 2 16 16 C 1.53002 * 109.46903 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.46927 * 180.02562 * 16 15 14 18 18 C 1.35943 * 116.99818 * 179.97438 * 17 16 15 19 19 C 1.38708 * 120.03115 * 359.72898 * 18 17 16 20 20 C 1.38153 * 119.97134 * 179.78617 * 19 18 17 21 21 C 1.38458 * 120.02802 * 0.48888 * 20 19 18 22 22 F 1.35101 * 119.96811 * 179.72567 * 21 20 19 23 23 C 1.38459 * 120.05872 * 359.74137 * 21 20 19 24 24 C 1.38149 * 120.03173 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 27 27 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46847 * 59.99941 * 13 12 2 30 30 H 1.08994 * 109.47472 * 179.97438 * 13 12 2 31 31 H 1.09001 * 109.47178 * 300.00161 * 13 12 2 32 32 H 1.08998 * 109.47075 * 310.00200 * 14 12 2 33 33 H 1.09002 * 109.46658 * 69.99973 * 14 12 2 34 34 H 1.08998 * 109.47596 * 300.00193 * 15 14 12 35 35 H 1.09002 * 109.47154 * 60.00588 * 15 14 12 36 36 H 1.08995 * 109.47372 * 300.00024 * 16 15 14 37 37 H 1.09001 * 109.47189 * 60.00692 * 16 15 14 38 38 H 1.08006 * 120.01812 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.98720 * 180.20972 * 20 19 18 40 40 H 1.07998 * 119.97973 * 180.02562 * 23 21 20 41 41 H 1.07995 * 120.01596 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0392 2.4181 15 6 2.3788 -0.5662 3.6186 16 6 1.9919 0.1956 4.8879 17 8 2.6743 -0.3695 6.0092 18 6 2.4401 0.1957 7.2231 19 6 1.5758 1.2753 7.3311 20 6 1.3353 1.8459 8.5661 21 6 1.9642 1.3472 9.6942 22 9 1.7324 1.9097 10.9004 23 6 2.8308 0.2726 9.5871 24 6 3.0695 -0.3030 8.3541 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.9028 -0.5285 -4.4375 29 1 1.8763 -2.6150 0.3648 30 1 1.9060 -2.5657 2.1436 31 1 0.4385 -2.0742 1.2640 32 1 1.9297 1.0871 2.3125 33 1 0.5722 -0.0344 2.5726 34 1 2.0977 -1.6140 3.7243 35 1 3.4553 -0.4925 3.4642 36 1 2.2726 1.2435 4.7826 37 1 0.9154 0.1215 5.0423 38 1 1.0881 1.6671 6.4507 39 1 0.6598 2.6843 8.6509 40 1 3.3204 -0.1156 10.4680 41 1 3.7458 -1.1408 8.2709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079601981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:43 Heat of formation + Delta-G solvation = -67.107523 kcal Electronic energy + Delta-G solvation = -21176.446559 eV Core-core repulsion = 17777.834955 eV Total energy + Delta-G solvation = -3398.611604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.82134 -41.09545 -39.36166 -38.23055 -35.15629 -33.62666 -32.22857 -31.18614 -30.10796 -27.82097 -27.13067 -25.73840 -24.04808 -23.12672 -22.14905 -20.91348 -19.25179 -18.67212 -18.32922 -17.65113 -17.31352 -17.04398 -16.52791 -16.28487 -15.87061 -15.69330 -15.21151 -14.98033 -14.83895 -14.56647 -14.17208 -14.01604 -13.98443 -13.73393 -13.44531 -13.14581 -13.11838 -12.66585 -12.54906 -12.39344 -12.21943 -11.94513 -11.81618 -11.69484 -11.45525 -11.32294 -11.03382 -10.74586 -10.18698 -9.11279 -8.92404 -8.26247 -6.29005 0.16266 0.19794 1.30723 1.36615 1.46723 2.10257 2.33216 2.56847 3.08041 3.30439 3.34431 3.70133 3.82087 3.94615 4.07759 4.16288 4.20351 4.33119 4.40927 4.43711 4.47494 4.53566 4.59645 4.68181 4.69415 4.76052 4.87141 4.91483 5.00311 5.12282 5.13441 5.14654 5.22536 5.27189 5.34294 5.46654 5.64506 5.71594 6.06243 6.37240 6.42191 6.73359 6.78477 7.35708 8.90594 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041237 B = 0.002618 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.831221 B =10694.157363 C =11143.597232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.183 3.817 3 H 0.036 0.964 4 C -0.504 4.504 5 H 0.039 0.961 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.951 3.049 9 H -0.269 1.269 10 H -0.245 1.245 11 H -0.301 1.301 12 N -0.543 5.543 13 C 0.035 3.965 14 C 0.056 3.944 15 C -0.106 4.106 16 C 0.064 3.936 17 O -0.325 6.325 18 C 0.111 3.889 19 C -0.185 4.185 20 C -0.114 4.114 21 C 0.036 3.964 22 F -0.150 7.150 23 C -0.111 4.111 24 C -0.133 4.133 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.161 0.839 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 5.087 26.262 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.075 3.925 3 H 0.054 0.946 4 C -0.542 4.542 5 H 0.057 0.943 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.169 1.169 11 H -0.229 1.229 12 N -0.266 5.266 13 C -0.113 4.113 14 C -0.072 4.072 15 C -0.144 4.144 16 C -0.011 4.011 17 O -0.239 6.239 18 C 0.065 3.935 19 C -0.204 4.204 20 C -0.132 4.132 21 C 0.017 3.983 22 F -0.129 7.129 23 C -0.130 4.130 24 C -0.152 4.152 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.179 0.821 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.657 4.926 26.045 26.639 hybrid contribution -1.291 0.591 -0.680 1.574 sum -3.948 5.517 25.365 26.257 Atomic orbital electron populations 1.22695 0.99843 1.01345 1.00140 1.19585 0.90028 0.94511 0.88397 0.94620 1.21233 1.30350 1.12525 0.90106 0.94291 1.25806 0.97576 1.00034 0.95405 1.70045 1.47970 1.42621 0.98546 0.85829 0.78887 0.80103 0.77348 1.19549 1.16903 1.22903 1.61990 1.60109 1.02759 1.01783 1.22261 0.97460 0.90095 1.01454 1.21991 0.97777 0.98288 0.89101 1.21395 1.01726 1.00277 0.90968 1.22854 0.96960 0.98039 0.83290 1.86068 1.66717 1.57041 1.14055 1.19323 0.95351 0.93029 0.85812 1.21374 1.01824 0.97935 0.99260 1.21178 1.00157 1.01122 0.90787 1.17834 1.02310 0.97304 0.80846 1.91469 1.93771 1.84518 1.43135 1.21178 0.97846 0.94963 0.98967 1.20529 1.02542 1.02758 0.89350 0.91680 0.94629 0.92798 0.92645 0.93739 0.90544 0.95494 0.90648 0.93815 0.90954 0.91212 0.90522 0.90398 0.82834 0.82814 0.82144 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.14 7.98 71.98 0.57 -6.57 16 2 C 0.18 8.17 1.93 44.17 0.09 8.25 16 3 H 0.04 1.63 7.09 -2.38 -0.02 1.61 16 4 C -0.50 -28.19 8.52 25.60 0.22 -27.97 16 5 H 0.04 2.46 6.99 -2.91 -0.02 2.44 16 6 C 0.01 0.49 5.45 84.66 0.46 0.95 16 7 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 8 Si 0.95 44.02 24.37 68.60 1.67 45.69 16 9 H -0.27 -11.87 6.87 99.48 0.68 -11.19 16 10 H -0.25 -10.33 6.53 99.48 0.65 -9.68 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 12 N -0.54 -20.76 4.74 -901.48 -4.27 -25.03 16 13 C 0.04 1.27 8.70 127.69 1.11 2.38 16 14 C 0.06 1.57 4.40 86.30 0.38 1.95 16 15 C -0.11 -2.48 5.51 30.59 0.17 -2.31 16 16 C 0.06 1.17 4.74 71.98 0.34 1.51 16 17 O -0.32 -6.91 10.14 -92.91 -0.94 -7.85 16 18 C 0.11 2.09 6.69 22.49 0.15 2.24 16 19 C -0.19 -2.98 9.04 22.36 0.20 -2.78 16 20 C -0.11 -1.77 10.02 22.30 0.22 -1.54 16 21 C 0.04 0.63 7.30 22.37 0.16 0.79 16 22 F -0.15 -2.84 17.27 44.97 0.78 -2.06 16 23 C -0.11 -1.68 10.02 22.30 0.22 -1.45 16 24 C -0.13 -2.21 9.98 22.36 0.22 -1.98 16 25 H 0.06 2.08 6.75 -2.39 -0.02 2.06 16 26 H 0.04 1.46 3.27 -2.39 -0.01 1.46 16 27 H 0.05 2.13 6.38 -2.39 -0.02 2.11 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.04 1.90 6.53 -2.38 -0.02 1.89 16 30 H 0.08 2.29 6.30 -2.39 -0.02 2.27 16 31 H 0.03 0.91 6.28 -2.39 -0.01 0.90 16 32 H 0.08 2.02 8.00 -2.39 -0.02 2.00 16 33 H 0.04 1.11 6.94 -2.39 -0.02 1.09 16 34 H 0.07 1.71 6.47 -2.39 -0.02 1.70 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.23 7.65 -2.39 -0.02 1.21 16 37 H 0.08 1.19 7.67 -2.39 -0.02 1.17 16 38 H 0.15 1.92 6.30 -2.91 -0.02 1.90 16 39 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -66.19 324.51 3.01 -63.19 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.95 Total: 11.51 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 4.53 Total: -26.53 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.98 Total: -83.95 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.94 Total: -7.85 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.67 Total: 45.69 kcal Total: -66.19 3.01 -63.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079601981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.922 kcal (2) G-P(sol) polarization free energy of solvation -66.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds