Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47088 * 2 1 4 4 C 1.46900 * 110.99851 * 295.90839 * 3 2 1 5 5 C 1.50699 * 109.47500 * 288.42662 * 4 3 2 6 6 H 1.08004 * 119.99980 * 0.68760 * 5 4 3 7 7 C 1.37878 * 120.00182 * 180.69038 * 5 4 3 8 8 N 1.31515 * 119.99818 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99834 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46853 * 90.00368 * 9 7 5 11 11 H 1.48501 * 109.47470 * 210.00291 * 9 7 5 12 12 H 1.48497 * 109.47404 * 330.00465 * 9 7 5 13 13 C 1.46899 * 110.99984 * 59.86588 * 3 2 1 14 14 C 1.52994 * 109.47104 * 66.04436 * 13 3 2 15 15 C 1.52998 * 109.47076 * 179.97438 * 14 13 3 16 16 O 1.42906 * 109.47376 * 179.97438 * 15 14 13 17 17 C 1.35946 * 117.00030 * 180.02562 * 16 15 14 18 18 C 1.38703 * 120.02834 * 0.27610 * 17 16 15 19 19 C 1.38153 * 119.96369 * 180.25037 * 18 17 16 20 20 C 1.38457 * 120.03376 * 359.47483 * 19 18 17 21 21 F 1.35098 * 119.96924 * 180.29368 * 20 19 18 22 22 C 1.38456 * 120.05538 * 0.27410 * 20 19 18 23 23 C 1.38149 * 120.02945 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.46352 * 298.42146 * 1 2 3 25 25 H 1.08997 * 109.47145 * 58.42157 * 1 2 3 26 26 H 1.09002 * 109.47004 * 178.43045 * 1 2 3 27 27 H 1.09007 * 109.46826 * 240.00255 * 2 1 3 28 28 H 1.08991 * 109.47517 * 120.00504 * 2 1 3 29 29 H 1.08999 * 109.47239 * 48.43125 * 4 3 2 30 30 H 1.09003 * 109.47132 * 168.42484 * 4 3 2 31 31 H 0.97006 * 119.99635 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46852 * 306.04753 * 13 3 2 33 33 H 1.09000 * 109.46657 * 186.04414 * 13 3 2 34 34 H 1.09007 * 109.47234 * 60.00028 * 14 13 3 35 35 H 1.09003 * 109.47233 * 300.00325 * 14 13 3 36 36 H 1.09007 * 109.47026 * 59.99950 * 15 14 13 37 37 H 1.09003 * 109.47395 * 300.00275 * 15 14 13 38 38 H 1.07998 * 120.02482 * 0.02762 * 18 17 16 39 39 H 1.08006 * 119.98134 * 179.74579 * 19 18 17 40 40 H 1.07999 * 119.97822 * 180.02562 * 22 20 19 41 41 H 1.08005 * 120.01184 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6302 2.0810 -1.2336 5 6 2.4340 1.5431 -2.3892 6 1 3.1537 0.7545 -2.2258 7 6 2.2509 2.0577 -3.6552 8 7 2.9521 1.5878 -4.6637 9 14 1.0059 3.4212 -3.9380 10 1 1.6682 4.7394 -3.7676 11 1 0.4604 3.3157 -5.3152 12 1 -0.1007 3.2927 -2.9561 13 6 1.5460 2.1108 1.1861 14 6 2.1749 1.5024 2.4411 15 6 1.6821 2.2588 3.6764 16 8 2.2689 1.6901 4.8488 17 6 1.9322 2.2498 6.0411 18 6 1.0509 3.3200 6.0812 19 6 0.7136 3.8911 7.2932 20 6 1.2465 3.3886 8.4682 21 9 0.9113 3.9443 9.6531 22 6 2.1224 2.3170 8.4298 23 6 2.4653 1.7473 7.2188 24 1 -0.3632 0.4891 0.9038 25 1 -0.3633 0.5381 -0.8755 26 1 -0.3633 -1.0273 -0.0281 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 0.5690 1.9191 -1.4226 30 1 1.8209 3.1487 -1.1241 31 1 2.8230 1.9497 -5.5545 32 1 0.4606 2.0338 1.2497 33 1 1.8321 3.1597 1.1083 34 1 3.2604 1.5793 2.3775 35 1 1.8889 0.4534 2.5188 36 1 0.5965 2.1823 3.7402 37 1 1.9683 3.3076 3.5985 38 1 0.6312 3.7092 5.1654 39 1 0.0306 4.7271 7.3244 40 1 2.5370 1.9258 9.3471 41 1 3.1482 0.9111 7.1893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = -56.857044 kcal Electronic energy + Delta-G solvation = -21090.925228 eV Core-core repulsion = 17692.758117 eV Total energy + Delta-G solvation = -3398.167110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.08744 -40.35089 -38.00629 -37.29034 -33.11173 -32.22166 -31.51564 -29.79643 -29.47706 -27.45145 -25.03726 -23.66456 -23.03717 -22.29956 -21.09088 -19.26768 -18.44557 -17.60139 -16.87175 -16.74807 -16.49713 -15.79501 -15.29290 -15.13669 -15.00715 -14.31470 -14.27904 -13.94973 -13.64794 -13.37532 -13.07270 -12.83692 -12.69901 -12.40005 -12.17462 -11.73126 -11.69016 -11.57187 -11.23544 -11.09684 -10.86638 -10.62690 -10.58365 -10.46132 -9.92646 -9.88296 -9.53561 -9.32029 -8.58092 -8.38114 -7.37388 -6.06530 -4.03279 0.81451 0.90911 2.90884 3.25187 3.25534 3.33469 3.33821 4.00463 4.34257 4.39544 4.43414 4.65858 4.76753 4.84403 4.92448 5.08329 5.18522 5.23661 5.30037 5.43667 5.51320 5.60525 5.66383 5.78729 5.80281 5.81308 5.83724 5.93005 5.98923 6.20217 6.26173 6.37520 6.42449 6.44818 6.73208 6.88863 7.01959 7.13305 7.59021 7.86791 8.01206 8.64555 9.03287 9.55183 11.06796 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034368 B = 0.002643 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.515990 B =10591.938503 C =10932.489757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 N -0.524 5.524 4 C 0.158 3.842 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.052 3.948 14 C -0.114 4.114 15 C 0.060 3.940 16 O -0.309 6.309 17 C 0.129 3.871 18 C -0.183 4.183 19 C -0.111 4.111 20 C 0.051 3.949 21 F -0.144 7.144 22 C -0.113 4.113 23 C -0.127 4.127 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.059 0.941 29 H -0.003 1.003 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 2.090 23.895 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.073 4.073 3 N -0.247 5.247 4 C 0.032 3.968 5 C -0.544 4.544 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.077 4.077 14 C -0.152 4.152 15 C -0.016 4.016 16 O -0.222 6.222 17 C 0.083 3.917 18 C -0.202 4.202 19 C -0.130 4.130 20 C 0.032 3.968 21 F -0.122 7.122 22 C -0.132 4.132 23 C -0.146 4.146 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.014 0.986 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.501 1.962 23.682 24.186 hybrid contribution -1.795 1.139 -0.208 2.136 sum -6.296 3.101 23.475 24.501 Atomic orbital electron populations 1.22409 0.99577 1.01414 1.01530 1.22068 0.91860 0.91128 1.02201 1.62134 1.58822 1.01881 1.01814 1.20248 0.94906 0.93903 0.87753 1.21021 1.22052 1.21242 0.90092 0.90149 1.24898 0.95814 0.96634 0.96054 1.69894 1.41046 1.42875 1.00156 0.86891 0.82328 0.83078 0.77605 1.20184 1.21221 1.19363 1.21981 0.96794 0.98330 0.90559 1.21545 1.02773 1.00187 0.90682 1.22937 0.97454 0.98001 0.83173 1.86118 1.67003 1.56556 1.12523 1.19087 0.93940 0.92327 0.86378 1.21200 1.01610 0.98480 0.98904 1.20952 1.00527 1.00711 0.90842 1.17574 1.01281 0.96840 0.81094 1.91484 1.91423 1.84652 1.44691 1.20954 0.97844 0.95551 0.98827 1.20321 1.02865 1.02362 0.89010 0.93577 0.91838 0.92958 0.89563 0.92249 0.98557 0.96123 0.92683 0.95124 0.91276 0.89882 0.90793 0.92060 0.91719 0.84302 0.84531 0.84133 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 9.26 37.16 0.34 -2.72 16 2 C 0.06 1.00 5.69 -3.82 -0.02 0.98 16 3 N -0.52 -10.36 4.66 -236.07 -1.10 -11.46 16 4 C 0.16 3.69 3.67 -4.98 -0.02 3.67 16 5 C -0.51 -14.09 9.09 -34.44 -0.31 -14.40 16 6 H 0.08 2.45 7.72 -52.48 -0.41 2.05 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 9 Si 0.87 21.13 27.45 -169.99 -4.67 16.46 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.22 6.56 56.52 0.37 -5.85 16 13 C 0.05 0.81 4.71 -3.83 -0.02 0.79 16 14 C -0.11 -1.48 5.51 -26.74 -0.15 -1.62 16 15 C 0.06 0.64 4.74 37.16 0.18 0.82 16 16 O -0.31 -3.62 10.14 -19.57 -0.20 -3.82 16 17 C 0.13 1.35 6.69 -39.24 -0.26 1.09 16 18 C -0.18 -1.71 9.04 -39.44 -0.36 -2.06 16 19 C -0.11 -0.99 10.02 -39.53 -0.40 -1.39 16 20 C 0.05 0.49 7.30 -39.42 -0.29 0.20 16 21 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 22 C -0.11 -0.96 10.02 -39.53 -0.40 -1.36 16 23 C -0.13 -1.17 9.98 -39.44 -0.39 -1.56 16 24 H 0.05 0.66 6.36 -51.93 -0.33 0.33 16 25 H 0.06 1.16 6.21 -51.93 -0.32 0.84 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.77 7.15 -51.92 -0.37 1.40 16 28 H 0.06 0.93 6.48 -51.93 -0.34 0.60 16 29 H 0.00 -0.07 5.02 -51.93 -0.26 -0.33 16 30 H 0.02 0.49 7.21 -51.93 -0.37 0.11 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.03 0.45 6.03 -51.93 -0.31 0.14 16 33 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 34 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.07 0.97 6.56 -51.93 -0.34 0.62 16 36 H 0.06 0.58 7.65 -51.92 -0.40 0.19 16 37 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 38 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 39 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -30.42 332.42 -8.20 -38.62 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.87 Total: -1.07 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.19 Total: -15.75 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.33 Total: -38.03 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.20 Total: -3.82 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.42 -8.20 -38.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.234 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds