Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47088 * 2 1 4 4 C 1.46900 * 110.99851 * 295.90839 * 3 2 1 5 5 C 1.50699 * 109.47500 * 288.42662 * 4 3 2 6 6 H 1.08004 * 119.99980 * 0.68760 * 5 4 3 7 7 C 1.37878 * 120.00182 * 180.69038 * 5 4 3 8 8 N 1.31515 * 119.99818 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99834 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46853 * 90.00368 * 9 7 5 11 11 H 1.48501 * 109.47470 * 210.00291 * 9 7 5 12 12 H 1.48497 * 109.47404 * 330.00465 * 9 7 5 13 13 C 1.46899 * 110.99984 * 59.86588 * 3 2 1 14 14 C 1.52994 * 109.47104 * 66.04436 * 13 3 2 15 15 C 1.52998 * 109.47076 * 179.97438 * 14 13 3 16 16 O 1.42906 * 109.47376 * 179.97438 * 15 14 13 17 17 C 1.35946 * 117.00030 * 180.02562 * 16 15 14 18 18 C 1.38703 * 120.02834 * 0.27610 * 17 16 15 19 19 C 1.38153 * 119.96369 * 180.25037 * 18 17 16 20 20 C 1.38457 * 120.03376 * 359.47483 * 19 18 17 21 21 F 1.35098 * 119.96924 * 180.29368 * 20 19 18 22 22 C 1.38456 * 120.05538 * 0.27410 * 20 19 18 23 23 C 1.38149 * 120.02945 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.46352 * 298.42146 * 1 2 3 25 25 H 1.08997 * 109.47145 * 58.42157 * 1 2 3 26 26 H 1.09002 * 109.47004 * 178.43045 * 1 2 3 27 27 H 1.09007 * 109.46826 * 240.00255 * 2 1 3 28 28 H 1.08991 * 109.47517 * 120.00504 * 2 1 3 29 29 H 1.08999 * 109.47239 * 48.43125 * 4 3 2 30 30 H 1.09003 * 109.47132 * 168.42484 * 4 3 2 31 31 H 0.97006 * 119.99635 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46852 * 306.04753 * 13 3 2 33 33 H 1.09000 * 109.46657 * 186.04414 * 13 3 2 34 34 H 1.09007 * 109.47234 * 60.00028 * 14 13 3 35 35 H 1.09003 * 109.47233 * 300.00325 * 14 13 3 36 36 H 1.09007 * 109.47026 * 59.99950 * 15 14 13 37 37 H 1.09003 * 109.47395 * 300.00275 * 15 14 13 38 38 H 1.07998 * 120.02482 * 0.02762 * 18 17 16 39 39 H 1.08006 * 119.98134 * 179.74579 * 19 18 17 40 40 H 1.07999 * 119.97822 * 180.02562 * 22 20 19 41 41 H 1.08005 * 120.01184 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6302 2.0810 -1.2336 5 6 2.4340 1.5431 -2.3892 6 1 3.1537 0.7545 -2.2258 7 6 2.2509 2.0577 -3.6552 8 7 2.9521 1.5878 -4.6637 9 14 1.0059 3.4212 -3.9380 10 1 1.6682 4.7394 -3.7676 11 1 0.4604 3.3157 -5.3152 12 1 -0.1007 3.2927 -2.9561 13 6 1.5460 2.1108 1.1861 14 6 2.1749 1.5024 2.4411 15 6 1.6821 2.2588 3.6764 16 8 2.2689 1.6901 4.8488 17 6 1.9322 2.2498 6.0411 18 6 1.0509 3.3200 6.0812 19 6 0.7136 3.8911 7.2932 20 6 1.2465 3.3886 8.4682 21 9 0.9113 3.9443 9.6531 22 6 2.1224 2.3170 8.4298 23 6 2.4653 1.7473 7.2188 24 1 -0.3632 0.4891 0.9038 25 1 -0.3633 0.5381 -0.8755 26 1 -0.3633 -1.0273 -0.0281 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 0.5690 1.9191 -1.4226 30 1 1.8209 3.1487 -1.1241 31 1 2.8230 1.9497 -5.5545 32 1 0.4606 2.0338 1.2497 33 1 1.8321 3.1597 1.1083 34 1 3.2604 1.5793 2.3775 35 1 1.8889 0.4534 2.5188 36 1 0.5965 2.1823 3.7402 37 1 1.9683 3.3076 3.5985 38 1 0.6312 3.7092 5.1654 39 1 0.0306 4.7271 7.3244 40 1 2.5370 1.9258 9.3471 41 1 3.1482 0.9111 7.1893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = -75.445740 kcal Electronic energy + Delta-G solvation = -21091.731294 eV Core-core repulsion = 17692.758117 eV Total energy + Delta-G solvation = -3398.973176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.82259 -41.09929 -39.30575 -38.19691 -34.88997 -33.65128 -32.20263 -31.31042 -30.37757 -28.97717 -26.22984 -24.94641 -24.09651 -23.21032 -22.29288 -20.66509 -19.24521 -18.85579 -18.33550 -17.62937 -17.44117 -16.69038 -16.59985 -16.45963 -16.11254 -15.67923 -15.23672 -15.00236 -14.58907 -14.48313 -14.26754 -14.15232 -13.91995 -13.59500 -13.31753 -13.09278 -13.07112 -12.82408 -12.49247 -12.29505 -12.20390 -12.01580 -11.82563 -11.71097 -11.66397 -11.41608 -11.22233 -10.74829 -10.18778 -9.11387 -8.90371 -8.25858 -6.28220 0.16174 0.19750 1.35675 1.37034 1.47324 2.10084 2.35829 2.56788 3.07637 3.30168 3.34203 3.69999 3.81903 3.92915 4.06759 4.14940 4.18922 4.28746 4.34635 4.37853 4.44684 4.54215 4.60906 4.67101 4.70444 4.77169 4.91045 4.97409 5.09565 5.12324 5.13454 5.14570 5.21643 5.25238 5.32361 5.48135 5.59311 5.71527 6.03459 6.37183 6.44602 6.71110 6.78500 7.34886 8.91205 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034368 B = 0.002643 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.515990 B =10591.938503 C =10932.489757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.056 3.944 3 N -0.546 5.546 4 C 0.168 3.832 5 C -0.511 4.511 6 H 0.034 0.966 7 C 0.004 3.996 8 N -0.951 5.951 9 Si 0.947 3.053 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.054 3.946 14 C -0.104 4.104 15 C 0.064 3.936 16 O -0.325 6.325 17 C 0.111 3.889 18 C -0.185 4.185 19 C -0.114 4.114 20 C 0.036 3.964 21 F -0.150 7.150 22 C -0.111 4.111 23 C -0.133 4.133 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.001 0.999 30 H 0.025 0.975 31 H 0.265 0.735 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.161 0.839 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 3.381 25.887 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.072 4.072 3 N -0.269 5.269 4 C 0.041 3.959 5 C -0.550 4.550 6 H 0.052 0.948 7 C -0.193 4.193 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.171 1.171 13 C -0.074 4.074 14 C -0.142 4.142 15 C -0.011 4.011 16 O -0.239 6.239 17 C 0.065 3.935 18 C -0.204 4.204 19 C -0.132 4.132 20 C 0.017 3.983 21 F -0.129 7.129 22 C -0.129 4.129 23 C -0.152 4.152 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.019 0.981 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.179 0.821 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.421 3.247 25.714 26.701 hybrid contribution -1.105 0.642 -0.746 1.480 sum -7.526 3.889 24.968 26.366 Atomic orbital electron populations 1.22311 0.97616 1.02607 1.01502 1.22023 0.93483 0.90194 1.01482 1.61982 1.60133 1.02747 1.02046 1.19985 0.94031 0.94002 0.87872 1.21289 1.21464 1.20003 0.92216 0.94805 1.25869 0.98155 0.99602 0.95626 1.70065 1.43389 1.44989 1.00822 0.85717 0.79907 0.79466 0.77863 1.19063 1.21045 1.17117 1.22031 0.97857 0.98134 0.89419 1.21365 1.01675 1.00355 0.90830 1.22849 0.98267 0.97959 0.82039 1.86069 1.67571 1.57152 1.13060 1.19320 0.94883 0.93136 0.86171 1.21370 1.01295 0.98102 0.99633 1.21179 1.00531 1.01047 0.90485 1.17831 1.01903 0.97400 0.81152 1.91468 1.91543 1.84807 1.45069 1.21178 0.97275 0.95029 0.99463 1.20528 1.03002 1.02729 0.88917 0.91179 0.94173 0.91133 0.93453 0.89838 0.98116 0.95651 0.92565 0.93467 0.90900 0.91388 0.90821 0.90317 0.90628 0.82857 0.82815 0.82136 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.48 9.26 71.98 0.67 -4.82 16 2 C 0.06 2.00 5.69 86.30 0.49 2.49 16 3 N -0.55 -21.24 4.66 -900.80 -4.20 -25.44 16 4 C 0.17 7.75 3.67 85.56 0.31 8.06 16 5 C -0.51 -29.34 9.09 25.60 0.23 -29.10 16 6 H 0.03 2.19 7.72 -2.91 -0.02 2.17 16 7 C 0.00 0.24 5.47 84.65 0.46 0.70 16 8 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 9 Si 0.95 43.37 27.45 68.60 1.88 45.26 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.25 -10.40 6.56 99.48 0.65 -9.75 16 13 C 0.05 1.52 4.71 86.30 0.41 1.93 16 14 C -0.10 -2.48 5.51 30.59 0.17 -2.32 16 15 C 0.06 1.19 4.74 71.98 0.34 1.53 16 16 O -0.32 -6.96 10.14 -92.94 -0.94 -7.90 16 17 C 0.11 2.10 6.69 22.49 0.15 2.25 16 18 C -0.19 -3.01 9.04 22.36 0.20 -2.81 16 19 C -0.11 -1.78 10.02 22.30 0.22 -1.55 16 20 C 0.04 0.63 7.30 22.37 0.16 0.79 16 21 F -0.15 -2.84 17.27 44.97 0.78 -2.07 16 22 C -0.11 -1.69 10.02 22.30 0.22 -1.46 16 23 C -0.13 -2.22 9.98 22.36 0.22 -2.00 16 24 H 0.07 1.77 6.36 -2.39 -0.02 1.76 16 25 H 0.04 1.39 6.21 -2.39 -0.01 1.38 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.05 2.02 7.15 -2.38 -0.02 2.01 16 28 H 0.08 2.53 6.48 -2.39 -0.02 2.52 16 29 H 0.00 0.06 5.02 -2.39 -0.01 0.05 16 30 H 0.03 1.15 7.21 -2.39 -0.02 1.13 16 31 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 32 H 0.05 1.21 6.03 -2.39 -0.01 1.20 16 33 H 0.07 2.02 7.87 -2.39 -0.02 2.00 16 34 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.07 1.75 6.56 -2.39 -0.02 1.74 16 36 H 0.08 1.21 7.65 -2.38 -0.02 1.19 16 37 H 0.08 1.25 7.68 -2.39 -0.02 1.23 16 38 H 0.15 1.94 6.30 -2.91 -0.02 1.92 16 39 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -67.59 332.42 3.06 -64.53 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.97 Total: 11.25 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.27 Total: -26.29 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -3.90 Total: -84.79 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.94 Total: -7.90 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.26 kcal Total: -67.59 3.06 -64.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.913 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds