Wall clock time and date at job start Tue Mar 31 2020 05:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31268 * 119.79734 * 2 1 4 4 C 1.33028 * 121.72470 * 179.97438 * 3 2 1 5 5 C 1.47966 * 119.44648 * 180.02562 * 4 3 2 6 6 C 1.39615 * 120.13823 * 179.72615 * 5 4 3 7 7 C 1.37936 * 119.84565 * 179.79426 * 6 5 4 8 8 C 1.38386 * 120.14689 * 0.48199 * 7 6 5 9 9 C 1.50701 * 119.85272 * 179.76905 * 8 7 6 10 10 C 1.53005 * 109.47126 * 299.97784 * 9 8 7 11 11 C 1.53000 * 109.47372 * 59.97652 * 9 8 7 12 12 C 1.38384 * 120.29446 * 359.74684 * 8 7 6 13 13 C 1.37933 * 120.14710 * 0.02562 * 12 8 7 14 14 C 1.39893 * 121.09942 * 0.02562 * 4 3 2 15 15 C 1.36613 * 119.46684 * 359.97438 * 14 4 3 16 16 C 1.40949 * 119.80148 * 179.97438 * 2 1 3 17 17 C 1.41049 * 120.55216 * 359.74819 * 16 2 1 18 18 H 1.07999 * 120.00327 * 334.83113 * 17 16 2 19 19 C 1.40029 * 120.00187 * 154.83053 * 17 16 2 20 20 N 1.30791 * 119.99893 * 343.98716 * 19 17 16 21 21 Si 1.86797 * 120.00354 * 163.98133 * 19 17 16 22 22 H 1.48503 * 109.46800 * 90.00106 * 21 19 17 23 23 H 1.48493 * 109.47303 * 210.00346 * 21 19 17 24 24 H 1.48505 * 109.47221 * 330.00657 * 21 19 17 25 25 H 1.08997 * 109.47408 * 270.01555 * 1 2 3 26 26 H 1.08998 * 109.47694 * 30.02425 * 1 2 3 27 27 H 1.09008 * 109.47401 * 150.01846 * 1 2 3 28 28 H 1.07998 * 120.07822 * 359.97438 * 6 5 4 29 29 H 1.07998 * 119.92464 * 180.23244 * 7 6 5 30 30 H 1.08998 * 109.47251 * 179.97438 * 9 8 7 31 31 H 1.08998 * 109.46682 * 60.00108 * 10 9 8 32 32 H 1.08999 * 109.46915 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.47170 * 300.00350 * 10 9 8 34 34 H 1.09005 * 109.46652 * 60.00304 * 11 9 8 35 35 H 1.08994 * 109.47481 * 179.97438 * 11 9 8 36 36 H 1.08998 * 109.47413 * 300.00490 * 11 9 8 37 37 H 1.08004 * 119.92517 * 179.97438 * 12 8 7 38 38 H 1.08005 * 120.07631 * 180.02562 * 13 12 8 39 39 H 1.07998 * 120.26485 * 180.02562 * 14 4 3 40 40 H 1.08003 * 120.79256 * 180.02562 * 15 14 4 41 41 H 0.96998 * 120.00152 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1592 1.1391 0.0000 4 6 3.4887 1.1839 0.0005 5 6 4.1724 2.4961 0.0011 6 6 5.5671 2.5599 0.0074 7 6 6.1982 3.7864 0.0035 8 6 5.4521 4.9519 0.0036 9 6 6.1484 6.2884 0.0046 10 6 7.0225 6.4071 1.2549 11 6 7.0251 6.4078 -1.2436 12 6 4.0694 4.8957 0.0021 13 6 3.4257 3.6757 0.0012 14 6 4.2512 0.0110 0.0005 15 6 3.6203 -1.2007 0.0006 16 6 2.2074 -1.2231 0.0005 17 6 1.5097 -2.4489 0.0064 18 1 0.5085 -2.4985 0.4081 19 6 2.1153 -3.6017 -0.5086 20 7 3.1752 -3.4999 -1.2681 21 14 1.4094 -5.2848 -0.1108 22 1 0.4032 -5.6550 -1.1384 23 1 2.5020 -6.2905 -0.1030 24 1 0.7618 -5.2469 1.2250 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5136 28 1 6.1505 1.6511 0.0123 29 1 7.2770 3.8373 0.0046 30 1 5.4050 7.0855 0.0040 31 1 7.7659 5.6100 1.2553 32 1 7.5265 7.3735 1.2554 33 1 6.3980 6.3220 2.1441 34 1 6.4023 6.3233 -2.1343 35 1 7.5284 7.3746 -1.2431 36 1 7.7685 5.6107 -1.2432 37 1 3.4930 5.8090 0.0025 38 1 2.3465 3.6331 -0.0004 39 1 5.3299 0.0630 0.0014 40 1 4.1878 -2.1196 0.0010 41 1 3.5949 -4.2985 -1.6246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082481159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:31 Heat of formation + Delta-G solvation = 19.944863 kcal Electronic energy + Delta-G solvation = -20684.372538 eV Core-core repulsion = 17720.305034 eV Total energy + Delta-G solvation = -2964.067505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.29550 -38.25803 -35.31420 -34.12688 -32.00433 -30.91555 -30.32760 -28.94960 -27.12332 -26.99006 -25.17181 -22.91754 -22.32055 -21.08486 -19.95880 -19.54427 -17.47376 -16.50246 -15.54571 -15.21387 -14.95922 -14.34401 -14.15261 -13.48970 -13.47720 -13.44884 -13.17983 -12.90416 -12.81051 -12.33798 -12.28488 -11.99023 -11.70763 -11.65768 -11.53305 -11.28850 -11.19633 -10.98125 -10.96533 -10.90338 -10.68409 -10.33854 -10.30646 -9.81824 -9.53356 -8.50355 -8.40025 -8.24021 -8.08002 -7.21441 -6.96515 -4.55880 1.58541 1.98177 2.65330 2.90238 2.93255 2.97578 3.15160 3.72171 4.22003 4.64757 4.85253 4.92973 5.26289 5.34082 5.42298 5.53804 5.55546 5.59263 5.60865 5.81543 5.82806 5.92484 5.98377 6.06551 6.08251 6.25743 6.28071 6.32581 6.43748 6.53497 6.61093 6.62805 6.72941 6.78933 6.82079 6.96963 7.04813 7.10305 7.25313 7.34226 7.51820 7.69729 7.78570 7.88184 8.29497 8.50059 8.60747 9.56661 9.87289 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.003422 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.864369 B = 8181.030729 C = 8706.181395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.008 3.992 3 N -0.446 5.446 4 C -0.002 4.002 5 C 0.018 3.982 6 C -0.133 4.133 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.051 4.051 10 C -0.142 4.142 11 C -0.143 4.143 12 C -0.117 4.117 13 C -0.111 4.111 14 C -0.126 4.126 15 C -0.143 4.143 16 C 0.074 3.926 17 C -0.431 4.431 18 H 0.089 0.911 19 C 0.071 3.929 20 N -0.777 5.777 21 Si 0.914 3.086 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.257 1.257 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.126 0.874 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 9.353 1.557 10.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.138 4.138 3 N -0.155 5.155 4 C -0.136 4.136 5 C 0.017 3.983 6 C -0.152 4.152 7 C -0.129 4.129 8 C -0.111 4.111 9 C -0.070 4.070 10 C -0.200 4.200 11 C -0.200 4.200 12 C -0.135 4.135 13 C -0.130 4.130 14 C -0.146 4.146 15 C -0.168 4.168 16 C 0.069 3.931 17 C -0.460 4.460 18 H 0.107 0.893 19 C -0.149 4.149 20 N -0.401 5.401 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.119 0.881 40 H 0.144 0.856 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.429 9.971 1.405 11.000 hybrid contribution 0.363 -1.735 0.021 1.772 sum 4.792 8.236 1.426 9.635 Atomic orbital electron populations 1.20255 0.91024 1.01236 1.00376 1.20999 0.95136 0.88006 1.09660 1.66731 1.08672 1.30394 1.09676 1.18771 0.89049 0.90748 1.15048 1.18690 0.92045 0.92123 0.95449 1.21164 0.93919 0.97381 1.02713 1.20680 0.98797 0.91897 1.01537 1.19658 0.93476 0.94230 1.03760 1.20024 0.97064 0.94588 0.95280 1.21850 0.99523 1.01169 0.97424 1.21850 0.99525 1.01163 0.97448 1.20889 0.93603 0.97368 1.01671 1.21233 1.00403 0.91152 1.00198 1.21303 0.98607 0.93494 1.01214 1.21315 0.94710 0.96629 1.04100 1.18417 0.92540 0.93175 0.88969 1.19689 1.01724 0.91875 1.32687 0.89312 1.26100 0.94210 1.02081 0.92522 1.69779 1.16944 1.32436 1.20922 0.86194 0.79595 0.79980 0.80462 1.19101 1.19835 1.18099 0.93314 0.93166 0.91478 0.86339 0.87031 0.91062 0.92569 0.92961 0.92644 0.92635 0.92961 0.92556 0.87070 0.85534 0.88116 0.85584 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 9.57 36.00 0.34 -1.13 16 2 C 0.01 0.19 6.86 -81.81 -0.56 -0.37 16 3 N -0.45 -11.02 9.30 -5.39 -0.05 -11.07 16 4 C 0.00 -0.05 6.74 -82.74 -0.56 -0.61 16 5 C 0.02 0.37 5.88 -104.89 -0.62 -0.25 16 6 C -0.13 -2.39 9.42 -39.18 -0.37 -2.76 16 7 C -0.11 -1.72 8.69 -39.64 -0.34 -2.06 16 8 C -0.11 -1.63 4.79 -104.51 -0.50 -2.14 16 9 C -0.05 -0.59 3.09 -91.77 -0.28 -0.87 16 10 C -0.14 -1.47 9.01 37.16 0.33 -1.13 16 11 C -0.14 -1.48 9.00 37.16 0.33 -1.15 16 12 C -0.12 -1.88 9.65 -39.64 -0.38 -2.26 16 13 C -0.11 -2.11 9.57 -39.18 -0.38 -2.49 16 14 C -0.13 -2.97 9.38 -39.55 -0.37 -3.34 16 15 C -0.14 -3.61 8.73 -39.00 -0.34 -3.95 16 16 C 0.07 1.90 5.58 -106.64 -0.59 1.30 16 17 C -0.43 -10.57 8.14 -37.85 -0.31 -10.88 16 18 H 0.09 2.04 6.87 -52.49 -0.36 1.68 16 19 C 0.07 1.66 5.19 -17.32 -0.09 1.57 16 20 N -0.78 -18.75 10.93 55.55 0.61 -18.14 16 21 Si 0.91 17.20 29.59 -169.99 -5.03 12.17 16 22 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 23 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.34 6.77 -51.92 -0.35 0.99 16 28 H 0.12 2.02 6.15 -52.49 -0.32 1.70 16 29 H 0.11 1.46 7.08 -52.49 -0.37 1.09 16 30 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 31 H 0.06 0.58 7.38 -51.93 -0.38 0.19 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.58 7.37 -51.93 -0.38 0.20 16 37 H 0.11 1.51 7.94 -52.48 -0.42 1.09 16 38 H 0.13 2.47 7.52 -52.48 -0.39 2.08 16 39 H 0.10 2.09 6.15 -52.49 -0.32 1.77 16 40 H 0.13 3.20 6.25 -52.48 -0.33 2.88 16 41 H 0.29 6.23 8.29 -40.82 -0.34 5.90 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -26.90 334.93 -9.82 -36.72 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.71 Total: 7.79 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: -4.68 Total: -32.51 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.56 Total: -29.21 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.90 -9.82 -36.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082481159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.661 kcal (2) G-P(sol) polarization free energy of solvation -26.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds