Wall clock time and date at job start Tue Mar 31 2020 05:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31268 * 119.79734 * 2 1 4 4 C 1.33028 * 121.72470 * 179.97438 * 3 2 1 5 5 C 1.47966 * 119.44648 * 180.02562 * 4 3 2 6 6 C 1.39615 * 120.13823 * 179.72615 * 5 4 3 7 7 C 1.37936 * 119.84565 * 179.79426 * 6 5 4 8 8 C 1.38386 * 120.14689 * 0.48199 * 7 6 5 9 9 C 1.50701 * 119.85272 * 179.76905 * 8 7 6 10 10 C 1.53005 * 109.47126 * 299.97784 * 9 8 7 11 11 C 1.53000 * 109.47372 * 59.97652 * 9 8 7 12 12 C 1.38384 * 120.29446 * 359.74684 * 8 7 6 13 13 C 1.37933 * 120.14710 * 0.02562 * 12 8 7 14 14 C 1.39893 * 121.09942 * 0.02562 * 4 3 2 15 15 C 1.36613 * 119.46684 * 359.97438 * 14 4 3 16 16 C 1.40949 * 119.80148 * 179.97438 * 2 1 3 17 17 C 1.41049 * 120.55216 * 359.74819 * 16 2 1 18 18 H 1.07999 * 120.00327 * 334.83113 * 17 16 2 19 19 C 1.40029 * 120.00187 * 154.83053 * 17 16 2 20 20 N 1.30791 * 119.99893 * 343.98716 * 19 17 16 21 21 Si 1.86797 * 120.00354 * 163.98133 * 19 17 16 22 22 H 1.48503 * 109.46800 * 90.00106 * 21 19 17 23 23 H 1.48493 * 109.47303 * 210.00346 * 21 19 17 24 24 H 1.48505 * 109.47221 * 330.00657 * 21 19 17 25 25 H 1.08997 * 109.47408 * 270.01555 * 1 2 3 26 26 H 1.08998 * 109.47694 * 30.02425 * 1 2 3 27 27 H 1.09008 * 109.47401 * 150.01846 * 1 2 3 28 28 H 1.07998 * 120.07822 * 359.97438 * 6 5 4 29 29 H 1.07998 * 119.92464 * 180.23244 * 7 6 5 30 30 H 1.08998 * 109.47251 * 179.97438 * 9 8 7 31 31 H 1.08998 * 109.46682 * 60.00108 * 10 9 8 32 32 H 1.08999 * 109.46915 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.47170 * 300.00350 * 10 9 8 34 34 H 1.09005 * 109.46652 * 60.00304 * 11 9 8 35 35 H 1.08994 * 109.47481 * 179.97438 * 11 9 8 36 36 H 1.08998 * 109.47413 * 300.00490 * 11 9 8 37 37 H 1.08004 * 119.92517 * 179.97438 * 12 8 7 38 38 H 1.08005 * 120.07631 * 180.02562 * 13 12 8 39 39 H 1.07998 * 120.26485 * 180.02562 * 14 4 3 40 40 H 1.08003 * 120.79256 * 180.02562 * 15 14 4 41 41 H 0.96998 * 120.00152 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1592 1.1391 0.0000 4 6 3.4887 1.1839 0.0005 5 6 4.1724 2.4961 0.0011 6 6 5.5671 2.5599 0.0074 7 6 6.1982 3.7864 0.0035 8 6 5.4521 4.9519 0.0036 9 6 6.1484 6.2884 0.0046 10 6 7.0225 6.4071 1.2549 11 6 7.0251 6.4078 -1.2436 12 6 4.0694 4.8957 0.0021 13 6 3.4257 3.6757 0.0012 14 6 4.2512 0.0110 0.0005 15 6 3.6203 -1.2007 0.0006 16 6 2.2074 -1.2231 0.0005 17 6 1.5097 -2.4489 0.0064 18 1 0.5085 -2.4985 0.4081 19 6 2.1153 -3.6017 -0.5086 20 7 3.1752 -3.4999 -1.2681 21 14 1.4094 -5.2848 -0.1108 22 1 0.4032 -5.6550 -1.1384 23 1 2.5020 -6.2905 -0.1030 24 1 0.7618 -5.2469 1.2250 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5136 28 1 6.1505 1.6511 0.0123 29 1 7.2770 3.8373 0.0046 30 1 5.4050 7.0855 0.0040 31 1 7.7659 5.6100 1.2553 32 1 7.5265 7.3735 1.2554 33 1 6.3980 6.3220 2.1441 34 1 6.4023 6.3233 -2.1343 35 1 7.5284 7.3746 -1.2431 36 1 7.7685 5.6107 -1.2432 37 1 3.4930 5.8090 0.0025 38 1 2.3465 3.6331 -0.0004 39 1 5.3299 0.0630 0.0014 40 1 4.1878 -2.1196 0.0010 41 1 3.5949 -4.2985 -1.6246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082481159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:30 Heat of formation + Delta-G solvation = 8.966003 kcal Electronic energy + Delta-G solvation = -20684.848617 eV Core-core repulsion = 17720.305034 eV Total energy + Delta-G solvation = -2964.543584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82573 -39.81984 -36.59870 -35.74609 -33.67666 -32.66789 -31.73753 -30.38330 -28.75373 -27.90512 -26.79929 -24.41990 -23.75936 -22.64789 -21.64126 -20.74751 -19.28233 -17.99655 -17.17542 -16.65186 -16.42386 -15.66385 -15.64859 -15.03356 -14.97473 -14.61958 -14.42627 -14.35887 -14.16143 -13.79255 -13.49861 -13.43686 -13.35831 -13.02141 -13.01170 -12.72838 -12.64157 -12.59670 -12.20666 -12.09154 -11.93617 -11.66296 -11.49640 -11.37907 -11.23660 -10.25015 -9.95769 -9.91730 -9.74567 -8.91477 -8.68898 -6.40521 0.07382 0.62114 0.95336 1.14660 1.38534 1.51315 1.57704 2.15073 2.61317 3.06861 3.70684 3.72694 3.86952 3.95013 4.14571 4.28161 4.38013 4.40747 4.47937 4.55442 4.64431 4.68357 4.79742 4.87994 4.92771 4.96769 5.00022 5.05024 5.05974 5.09079 5.13298 5.24038 5.26008 5.30512 5.41715 5.46469 5.49293 5.55545 5.76885 5.82462 5.83306 5.97894 6.07768 6.24267 6.45416 6.68294 6.76341 7.70901 8.16698 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.003422 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.864369 B = 8181.030729 C = 8706.181395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.016 4.016 3 N -0.462 5.462 4 C -0.009 4.009 5 C -0.022 4.022 6 C -0.136 4.136 7 C -0.109 4.109 8 C -0.095 4.095 9 C -0.051 4.051 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.119 4.119 13 C -0.122 4.122 14 C -0.136 4.136 15 C -0.163 4.163 16 C 0.043 3.957 17 C -0.458 4.458 18 H 0.096 0.904 19 C 0.033 3.967 20 N -0.811 5.811 21 Si 0.989 3.011 22 H -0.259 1.259 23 H -0.267 1.267 24 H -0.254 1.254 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.138 0.862 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.742 10.956 1.794 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.160 4.160 3 N -0.171 5.171 4 C -0.143 4.143 5 C -0.023 4.023 6 C -0.155 4.155 7 C -0.127 4.127 8 C -0.095 4.095 9 C -0.069 4.069 10 C -0.198 4.198 11 C -0.199 4.199 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.156 4.156 15 C -0.188 4.188 16 C 0.038 3.962 17 C -0.486 4.486 18 H 0.114 0.886 19 C -0.185 4.185 20 N -0.435 5.435 21 Si 0.809 3.191 22 H -0.183 1.183 23 H -0.191 1.191 24 H -0.178 1.178 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.156 0.844 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.466 11.592 1.640 12.921 hybrid contribution 0.180 -1.972 -0.067 1.981 sum 5.646 9.620 1.573 11.265 Atomic orbital electron populations 1.20242 0.88698 1.01763 1.01423 1.21604 0.96997 0.87884 1.09556 1.66838 1.09296 1.30426 1.10528 1.19376 0.89105 0.92394 1.13468 1.18744 0.93305 0.91207 0.99039 1.21307 0.92908 0.98859 1.02389 1.21004 1.00364 0.91006 1.00284 1.20151 0.93135 0.95897 1.00313 1.20130 0.97614 0.92587 0.96614 1.21844 0.99250 1.02527 0.96228 1.21847 0.99249 1.02525 0.96269 1.21180 0.94561 0.97097 1.00818 1.21236 0.99855 0.92035 1.00949 1.21542 0.99808 0.93116 1.01112 1.21368 0.95060 0.96885 1.05521 1.18774 0.93023 0.94288 0.90106 1.19939 1.02376 0.92419 1.33848 0.88621 1.26983 0.94300 1.05553 0.91625 1.69828 1.18164 1.33902 1.21628 0.85082 0.78930 0.74866 0.80244 1.18305 1.19113 1.17788 0.91894 0.92212 0.91215 0.86001 0.84088 0.89865 0.92505 0.90774 0.93323 0.93409 0.90756 0.92509 0.84392 0.87003 0.86016 0.86540 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.69 9.57 71.23 0.68 -2.00 16 2 C -0.02 -0.80 6.86 43.30 0.30 -0.50 16 3 N -0.46 -23.71 9.30 -170.98 -1.59 -25.30 16 4 C -0.01 -0.44 6.74 41.94 0.28 -0.15 16 5 C -0.02 -0.93 5.88 -20.04 -0.12 -1.05 16 6 C -0.14 -4.80 9.42 22.53 0.21 -4.59 16 7 C -0.11 -3.10 8.69 22.23 0.19 -2.91 16 8 C -0.09 -2.53 4.79 -19.79 -0.09 -2.62 16 9 C -0.05 -0.98 3.09 -11.54 -0.04 -1.01 16 10 C -0.14 -2.35 9.01 71.98 0.65 -1.70 16 11 C -0.14 -2.39 9.00 71.98 0.65 -1.74 16 12 C -0.12 -3.58 9.65 22.23 0.21 -3.37 16 13 C -0.12 -4.65 9.57 22.53 0.22 -4.43 16 14 C -0.14 -6.67 9.38 22.29 0.21 -6.46 16 15 C -0.16 -8.67 8.73 22.64 0.20 -8.47 16 16 C 0.04 2.29 5.58 -21.17 -0.12 2.17 16 17 C -0.46 -23.13 8.14 23.39 0.19 -22.94 16 18 H 0.10 4.51 6.87 -2.91 -0.02 4.49 16 19 C 0.03 1.55 5.19 85.28 0.44 1.99 16 20 N -0.81 -40.25 10.93 21.84 0.24 -40.01 16 21 Si 0.99 35.33 29.59 68.60 2.03 37.36 16 22 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 23 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 24 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 25 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.07 2.84 6.77 -2.38 -0.02 2.83 16 28 H 0.12 4.12 6.15 -2.91 -0.02 4.10 16 29 H 0.14 3.19 7.08 -2.91 -0.02 3.16 16 30 H 0.08 1.44 7.87 -2.39 -0.02 1.43 16 31 H 0.06 0.94 7.38 -2.39 -0.02 0.93 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.96 7.37 -2.39 -0.02 0.94 16 37 H 0.14 3.37 7.94 -2.91 -0.02 3.34 16 38 H 0.11 4.50 7.52 -2.91 -0.02 4.48 16 39 H 0.12 5.23 6.15 -2.91 -0.02 5.21 16 40 H 0.12 6.26 6.25 -2.91 -0.02 6.24 16 41 H 0.29 13.08 8.29 -92.71 -0.77 12.31 16 Total: -1.00 -60.51 334.93 5.77 -54.74 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 1.03 Total: 33.00 kcal Atomic # 6 Polarization: -63.86 SS G_CDS: 4.07 Total: -59.80 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -1.35 Total: -65.31 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -60.51 5.77 -54.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082481159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.710 kcal (2) G-P(sol) polarization free energy of solvation -60.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds