Wall clock time and date at job start Tue Mar 31 2020 05:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47096 * 2 1 4 4 C 1.50698 * 109.47471 * 120.00285 * 2 1 3 5 5 C 1.38109 * 120.04105 * 297.10400 * 4 2 1 6 6 C 1.38272 * 120.08188 * 180.02562 * 5 4 2 7 7 C 1.38329 * 120.16094 * 0.02562 * 6 5 4 8 8 C 1.38066 * 120.07769 * 359.71995 * 7 6 5 9 9 C 1.38954 * 120.03971 * 117.12273 * 4 2 1 10 10 N 1.39591 * 120.07878 * 359.97438 * 9 4 2 11 11 C 1.38813 * 119.99973 * 77.06643 * 10 9 4 12 12 C 1.39605 * 119.84581 * 4.91218 * 11 10 9 13 13 C 1.36313 * 120.16028 * 179.75894 * 12 11 10 14 14 C 1.40895 * 119.83650 * 0.52079 * 13 12 11 15 15 C 1.41111 * 120.15142 * 179.71721 * 14 13 12 16 16 H 1.08000 * 119.99770 * 154.58182 * 15 14 13 17 17 C 1.39843 * 120.00029 * 334.57571 * 15 14 13 18 18 N 1.30908 * 119.99884 * 341.21898 * 17 15 14 19 19 Si 1.86800 * 119.99864 * 161.21724 * 17 15 14 20 20 H 1.48499 * 109.47012 * 94.97777 * 19 17 15 21 21 H 1.48500 * 109.46842 * 214.97175 * 19 17 15 22 22 H 1.48494 * 109.47176 * 334.97288 * 19 17 15 23 23 C 1.40910 * 119.69701 * 359.73403 * 14 13 12 24 24 C 1.36309 * 119.83419 * 0.02562 * 23 14 13 25 25 H 1.08993 * 109.47088 * 299.99683 * 1 2 3 26 26 H 1.08997 * 109.46897 * 59.99992 * 1 2 3 27 27 H 1.08997 * 109.46753 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47174 * 240.00607 * 2 1 3 29 29 H 1.08995 * 109.47701 * 300.00404 * 3 2 1 30 30 H 1.09007 * 109.47038 * 60.00138 * 3 2 1 31 31 H 1.08998 * 109.47542 * 179.97438 * 3 2 1 32 32 H 1.08003 * 119.95502 * 359.97438 * 5 4 2 33 33 H 1.08002 * 119.92397 * 179.97438 * 6 5 4 34 34 H 1.07997 * 119.96373 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.04080 * 180.29969 * 8 7 6 36 36 H 0.96996 * 119.99965 * 256.78883 * 10 9 4 37 37 H 1.08007 * 119.91716 * 0.02562 * 12 11 10 38 38 H 1.08006 * 120.08167 * 180.27389 * 13 12 11 39 39 H 0.97006 * 119.99884 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.07981 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.91825 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7494 -0.2055 2.4843 6 6 2.2104 -0.8564 3.6138 7 6 2.9568 -2.0147 3.4925 8 6 3.2392 -2.5282 2.2424 9 6 2.7813 -1.8741 1.1046 10 7 3.0693 -2.3874 -0.1611 11 6 4.0601 -1.8031 -0.9382 12 6 4.8362 -0.7689 -0.4119 13 6 5.8141 -0.1938 -1.1676 14 6 6.0334 -0.6383 -2.4865 15 6 7.0400 -0.0436 -3.2767 16 1 7.4924 -0.6006 -4.0839 17 6 7.4518 1.2669 -3.0147 18 7 6.6884 2.0645 -2.3113 19 14 9.0911 1.8791 -3.6682 20 1 8.8783 2.5806 -4.9597 21 1 9.6949 2.8179 -2.6888 22 1 10.0032 0.7258 -3.8757 23 6 5.2428 -1.6790 -3.0130 24 6 4.2716 -2.2482 -2.2443 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.1679 0.6993 2.5827 33 1 1.9879 -0.4591 4.5931 34 1 3.3156 -2.5203 4.3768 35 1 3.8179 -3.4352 2.1485 36 1 2.5797 -3.1549 -0.4961 37 1 4.6641 -0.4264 0.5979 38 1 6.4168 0.6033 -0.7577 39 1 6.9741 2.9735 -2.1293 40 1 5.4053 -2.0242 -4.0233 41 1 3.6645 -3.0457 -2.6466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082715543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:06 Heat of formation + Delta-G solvation = 37.320285 kcal Electronic energy + Delta-G solvation = -21656.338480 eV Core-core repulsion = 18693.024430 eV Total energy + Delta-G solvation = -2963.314050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.78422 -37.58819 -35.04542 -34.87052 -32.98633 -29.94567 -29.48582 -29.37852 -27.75181 -26.79376 -24.49768 -23.14044 -22.00129 -21.02137 -20.03632 -19.55917 -17.23796 -16.78523 -16.27796 -15.49875 -15.17102 -14.96725 -13.97523 -13.84450 -13.72536 -13.37775 -13.21784 -12.78539 -12.64503 -12.18467 -12.06393 -11.98790 -11.78497 -11.72425 -11.59755 -11.25474 -11.03947 -10.90388 -10.78676 -10.59281 -10.35915 -10.20506 -9.73564 -9.35956 -9.30037 -8.74978 -8.51107 -8.17886 -7.50055 -6.68769 -6.46083 -4.06783 1.61281 1.65314 2.89320 3.09620 3.14215 3.18880 3.32264 3.99654 4.04038 4.29908 4.74027 4.99157 5.09452 5.25291 5.40253 5.53474 5.55296 5.74035 5.78027 5.85444 5.91941 6.02623 6.11079 6.17734 6.25139 6.27042 6.33309 6.39319 6.53543 6.73518 6.74958 6.76930 6.92501 6.93725 7.04494 7.15893 7.23385 7.32743 7.60081 7.66625 7.82293 8.14035 8.29412 8.51053 8.66587 8.75712 9.03466 9.12087 10.34169 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.004770 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.445247 B = 5868.005570 C = 6017.541840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.076 4.076 5 C -0.112 4.112 6 C -0.133 4.133 7 C -0.121 4.121 8 C -0.131 4.131 9 C 0.179 3.821 10 N -0.715 5.715 11 C 0.082 3.918 12 C -0.144 4.144 13 C -0.128 4.128 14 C 0.082 3.918 15 C -0.467 4.467 16 H 0.073 0.927 17 C 0.077 3.923 18 N -0.803 5.803 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.192 4.192 24 C -0.150 4.150 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.393 0.607 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.276 0.724 40 H 0.092 0.908 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.945 -3.253 8.208 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 C -0.197 4.197 4 C -0.078 4.078 5 C -0.131 4.131 6 C -0.152 4.152 7 C -0.140 4.140 8 C -0.151 4.151 9 C 0.085 3.915 10 N -0.348 5.348 11 C -0.012 4.012 12 C -0.166 4.166 13 C -0.147 4.147 14 C 0.079 3.921 15 C -0.498 4.498 16 H 0.091 0.909 17 C -0.139 4.139 18 N -0.429 5.429 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.212 4.212 24 C -0.171 4.171 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.228 0.772 37 H 0.105 0.895 38 H 0.133 0.867 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.904 -2.888 8.364 12.553 hybrid contribution 0.594 0.138 -0.338 0.697 sum -8.310 -2.750 8.027 11.876 Atomic orbital electron populations 1.21818 0.95251 1.01202 1.01273 1.20071 0.94643 0.96285 0.96600 1.21808 1.02595 0.94659 1.00688 1.20313 0.96836 0.95836 0.94840 1.20855 1.00680 0.99718 0.91802 1.21021 0.99733 0.96267 0.98135 1.20934 0.99496 0.96731 0.96849 1.21518 1.00101 1.01215 0.92310 1.17336 0.95111 0.93321 0.85747 1.41223 1.42204 1.36400 1.14927 1.17249 0.93832 0.98829 0.91327 1.20074 0.99154 0.98676 0.98672 1.20865 0.98817 1.01212 0.93855 1.17505 0.91681 0.91232 0.91643 1.19364 1.18101 0.97570 1.14778 0.90904 1.25787 0.97475 0.96668 0.93976 1.69866 1.34709 1.06383 1.31975 0.86438 0.82838 0.79115 0.79099 1.19831 1.20251 1.18630 1.20522 0.99305 1.03173 0.98244 1.19806 1.01826 1.02510 0.93002 0.93088 0.92692 0.93152 0.88915 0.92775 0.93548 0.91457 0.86475 0.86652 0.86570 0.86286 0.77242 0.89479 0.86710 0.91284 0.89021 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.04 37.16 0.34 -1.45 16 2 C -0.06 -0.91 2.93 -91.77 -0.27 -1.18 16 3 C -0.14 -2.27 8.97 37.16 0.33 -1.94 16 4 C -0.08 -1.20 4.36 -104.41 -0.45 -1.65 16 5 C -0.11 -1.56 8.72 -39.62 -0.35 -1.91 16 6 C -0.13 -1.71 10.04 -39.54 -0.40 -2.11 16 7 C -0.12 -1.60 10.04 -39.61 -0.40 -2.00 16 8 C -0.13 -1.98 9.97 -39.37 -0.39 -2.38 16 9 C 0.18 2.97 4.47 -83.78 -0.37 2.59 16 10 N -0.72 -12.53 4.49 -8.31 -0.04 -12.57 16 11 C 0.08 1.75 5.43 -83.68 -0.45 1.29 16 12 C -0.14 -3.36 8.79 -39.76 -0.35 -3.71 16 13 C -0.13 -3.32 8.63 -39.27 -0.34 -3.66 16 14 C 0.08 2.20 5.56 -106.79 -0.59 1.60 16 15 C -0.47 -12.59 9.02 -37.89 -0.34 -12.93 16 16 H 0.07 1.90 7.91 -52.49 -0.42 1.48 16 17 C 0.08 1.97 5.10 -17.35 -0.09 1.88 16 18 N -0.80 -21.10 11.07 55.54 0.61 -20.48 16 19 Si 0.90 19.12 29.60 -169.99 -5.03 14.09 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.19 -4.69 9.74 -39.27 -0.38 -5.07 16 24 C -0.15 -3.28 9.82 -39.77 -0.39 -3.67 16 25 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.72 6.06 -51.93 -0.31 1.40 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.65 7.23 -51.93 -0.38 0.27 16 31 H 0.07 1.29 7.80 -51.93 -0.41 0.89 16 32 H 0.12 1.44 7.10 -52.48 -0.37 1.06 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.39 6.07 8.82 -40.82 -0.36 5.71 16 37 H 0.09 1.99 6.74 -52.48 -0.35 1.64 16 38 H 0.12 3.13 6.26 -52.48 -0.33 2.80 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -27.42 335.62 -10.13 -37.55 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.84 Total: 12.64 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: -4.90 Total: -36.29 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.58 Total: -33.05 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.42 -10.13 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082715543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.872 kcal (2) G-P(sol) polarization free energy of solvation -27.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds