Wall clock time and date at job start Tue Mar 31 2020 05:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47096 * 2 1 4 4 C 1.50698 * 109.47471 * 120.00285 * 2 1 3 5 5 C 1.38109 * 120.04105 * 297.10400 * 4 2 1 6 6 C 1.38272 * 120.08188 * 180.02562 * 5 4 2 7 7 C 1.38329 * 120.16094 * 0.02562 * 6 5 4 8 8 C 1.38066 * 120.07769 * 359.71995 * 7 6 5 9 9 C 1.38954 * 120.03971 * 117.12273 * 4 2 1 10 10 N 1.39591 * 120.07878 * 359.97438 * 9 4 2 11 11 C 1.38813 * 119.99973 * 77.06643 * 10 9 4 12 12 C 1.39605 * 119.84581 * 4.91218 * 11 10 9 13 13 C 1.36313 * 120.16028 * 179.75894 * 12 11 10 14 14 C 1.40895 * 119.83650 * 0.52079 * 13 12 11 15 15 C 1.41111 * 120.15142 * 179.71721 * 14 13 12 16 16 H 1.08000 * 119.99770 * 154.58182 * 15 14 13 17 17 C 1.39843 * 120.00029 * 334.57571 * 15 14 13 18 18 N 1.30908 * 119.99884 * 341.21898 * 17 15 14 19 19 Si 1.86800 * 119.99864 * 161.21724 * 17 15 14 20 20 H 1.48499 * 109.47012 * 94.97777 * 19 17 15 21 21 H 1.48500 * 109.46842 * 214.97175 * 19 17 15 22 22 H 1.48494 * 109.47176 * 334.97288 * 19 17 15 23 23 C 1.40910 * 119.69701 * 359.73403 * 14 13 12 24 24 C 1.36309 * 119.83419 * 0.02562 * 23 14 13 25 25 H 1.08993 * 109.47088 * 299.99683 * 1 2 3 26 26 H 1.08997 * 109.46897 * 59.99992 * 1 2 3 27 27 H 1.08997 * 109.46753 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47174 * 240.00607 * 2 1 3 29 29 H 1.08995 * 109.47701 * 300.00404 * 3 2 1 30 30 H 1.09007 * 109.47038 * 60.00138 * 3 2 1 31 31 H 1.08998 * 109.47542 * 179.97438 * 3 2 1 32 32 H 1.08003 * 119.95502 * 359.97438 * 5 4 2 33 33 H 1.08002 * 119.92397 * 179.97438 * 6 5 4 34 34 H 1.07997 * 119.96373 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.04080 * 180.29969 * 8 7 6 36 36 H 0.96996 * 119.99965 * 256.78883 * 10 9 4 37 37 H 1.08007 * 119.91716 * 0.02562 * 12 11 10 38 38 H 1.08006 * 120.08167 * 180.27389 * 13 12 11 39 39 H 0.97006 * 119.99884 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.07981 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.91825 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7494 -0.2055 2.4843 6 6 2.2104 -0.8564 3.6138 7 6 2.9568 -2.0147 3.4925 8 6 3.2392 -2.5282 2.2424 9 6 2.7813 -1.8741 1.1046 10 7 3.0693 -2.3874 -0.1611 11 6 4.0601 -1.8031 -0.9382 12 6 4.8362 -0.7689 -0.4119 13 6 5.8141 -0.1938 -1.1676 14 6 6.0334 -0.6383 -2.4865 15 6 7.0400 -0.0436 -3.2767 16 1 7.4924 -0.6006 -4.0839 17 6 7.4518 1.2669 -3.0147 18 7 6.6884 2.0645 -2.3113 19 14 9.0911 1.8791 -3.6682 20 1 8.8783 2.5806 -4.9597 21 1 9.6949 2.8179 -2.6888 22 1 10.0032 0.7258 -3.8757 23 6 5.2428 -1.6790 -3.0130 24 6 4.2716 -2.2482 -2.2443 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.1679 0.6993 2.5827 33 1 1.9879 -0.4591 4.5931 34 1 3.3156 -2.5203 4.3768 35 1 3.8179 -3.4352 2.1485 36 1 2.5797 -3.1549 -0.4961 37 1 4.6641 -0.4264 0.5979 38 1 6.4168 0.6033 -0.7577 39 1 6.9741 2.9735 -2.1293 40 1 5.4053 -2.0242 -4.0233 41 1 3.6645 -3.0457 -2.6466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082715543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:06 Heat of formation + Delta-G solvation = 25.724050 kcal Electronic energy + Delta-G solvation = -21656.841330 eV Core-core repulsion = 18693.024430 eV Total energy + Delta-G solvation = -2963.816900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06924 -39.29079 -36.52116 -36.18499 -34.75996 -31.42900 -31.33417 -30.66680 -29.28567 -27.97892 -26.30204 -24.28693 -23.47194 -22.82364 -21.65335 -20.75803 -19.16159 -18.07723 -17.96633 -16.81453 -16.71405 -16.35491 -15.68959 -15.17365 -14.88703 -14.67615 -14.59218 -14.42736 -14.25701 -13.84651 -13.68965 -13.46670 -13.18476 -13.02933 -12.85568 -12.74490 -12.66284 -12.47120 -12.29460 -12.01778 -11.72075 -11.57536 -11.46192 -11.22054 -11.07447 -10.45029 -9.65003 -9.43132 -9.38202 -8.57534 -8.23105 -6.03113 0.46612 0.54093 1.10196 1.18267 1.39527 1.51649 1.58060 2.26506 2.77966 2.84745 2.97858 3.82136 3.85191 3.96292 4.24854 4.32664 4.35165 4.44512 4.47739 4.51760 4.60460 4.71941 4.77806 4.83278 4.94669 4.98687 5.05483 5.15419 5.18708 5.25336 5.28922 5.37948 5.42775 5.43738 5.58715 5.66781 5.71017 5.79083 5.84554 5.95284 6.10692 6.18784 6.39957 6.69061 6.90248 7.07305 7.17019 7.25336 8.46549 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.004770 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.445247 B = 5868.005570 C = 6017.541840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.135 4.135 4 C -0.088 4.088 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.121 4.121 8 C -0.140 4.140 9 C 0.145 3.855 10 N -0.704 5.704 11 C 0.111 3.889 12 C -0.148 4.148 13 C -0.144 4.144 14 C 0.045 3.955 15 C -0.506 4.506 16 H 0.069 0.931 17 C 0.035 3.965 18 N -0.837 5.837 19 Si 0.973 3.027 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.261 1.261 23 C -0.199 4.199 24 C -0.156 4.156 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.122 0.878 36 H 0.404 0.596 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.282 0.718 40 H 0.098 0.902 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.258 -3.655 9.961 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.074 4.074 3 C -0.193 4.193 4 C -0.090 4.090 5 C -0.136 4.136 6 C -0.143 4.143 7 C -0.139 4.139 8 C -0.160 4.160 9 C 0.052 3.948 10 N -0.336 5.336 11 C 0.014 3.986 12 C -0.170 4.170 13 C -0.165 4.165 14 C 0.042 3.958 15 C -0.537 4.537 16 H 0.087 0.913 17 C -0.178 4.178 18 N -0.465 5.465 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.185 1.185 23 C -0.219 4.219 24 C -0.178 4.178 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.241 0.759 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.255 -3.319 10.140 14.798 hybrid contribution 0.818 0.167 -0.722 1.104 sum -9.437 -3.151 9.418 13.700 Atomic orbital electron populations 1.21751 0.92808 1.01820 1.02397 1.19984 0.96641 0.95287 0.95487 1.21753 0.99987 0.95659 1.01854 1.20373 0.97341 0.95686 0.95606 1.21125 1.00750 1.00392 0.91322 1.21440 0.98097 0.95526 0.99262 1.21294 0.98798 0.96824 0.96997 1.21643 1.00257 1.01427 0.92715 1.17573 0.97088 0.94700 0.85431 1.41108 1.40986 1.36276 1.15182 1.17277 0.93065 0.96971 0.91264 1.20017 0.99091 0.99350 0.98517 1.20737 0.99932 1.01510 0.94284 1.17797 0.93030 0.92796 0.92187 1.19581 1.19689 0.98685 1.15758 0.91321 1.26585 1.00718 0.96331 0.94135 1.69936 1.36352 1.06844 1.33322 0.85338 0.78019 0.78480 0.78715 1.18938 1.19388 1.18489 1.20731 0.99536 1.02736 0.98917 1.20093 1.01530 1.03138 0.93020 0.91289 0.92241 0.92776 0.92237 0.92871 0.91106 0.95315 0.84581 0.83367 0.83717 0.85999 0.75936 0.89401 0.88955 0.90790 0.88377 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.04 71.98 0.65 -2.47 16 2 C -0.06 -1.71 2.93 -11.54 -0.03 -1.74 16 3 C -0.14 -4.38 8.97 71.98 0.65 -3.73 16 4 C -0.09 -2.65 4.36 -19.72 -0.09 -2.73 16 5 C -0.12 -2.93 8.72 22.25 0.19 -2.74 16 6 C -0.13 -2.74 10.04 22.30 0.22 -2.51 16 7 C -0.12 -2.79 10.04 22.25 0.22 -2.57 16 8 C -0.14 -3.97 9.97 22.41 0.22 -3.75 16 9 C 0.15 4.64 4.47 38.26 0.17 4.81 16 10 N -0.70 -24.06 4.49 -180.19 -0.81 -24.87 16 11 C 0.11 4.73 5.43 38.70 0.21 4.95 16 12 C -0.15 -7.11 8.79 22.15 0.19 -6.92 16 13 C -0.14 -7.91 8.63 22.47 0.19 -7.71 16 14 C 0.04 2.50 5.56 -21.27 -0.12 2.38 16 15 C -0.51 -28.54 9.02 23.36 0.21 -28.33 16 16 H 0.07 3.75 7.91 -2.91 -0.02 3.73 16 17 C 0.03 1.85 5.10 85.22 0.43 2.28 16 18 N -0.84 -45.97 11.07 21.81 0.24 -45.73 16 19 Si 0.97 40.31 29.60 68.60 2.03 42.34 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 C -0.20 -9.94 9.74 22.47 0.22 -9.73 16 24 C -0.16 -6.79 9.82 22.15 0.22 -6.57 16 25 H 0.07 1.40 7.56 -2.39 -0.02 1.38 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 2.21 6.06 -2.39 -0.01 2.20 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.89 7.23 -2.38 -0.02 1.87 16 31 H 0.03 1.13 7.80 -2.39 -0.02 1.11 16 32 H 0.14 2.83 7.10 -2.91 -0.02 2.81 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.40 11.90 8.82 -92.71 -0.82 11.08 16 37 H 0.09 4.15 6.74 -2.91 -0.02 4.13 16 38 H 0.09 5.37 6.26 -2.91 -0.02 5.35 16 39 H 0.28 14.12 8.30 -92.70 -0.77 13.35 16 40 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -62.29 335.62 5.45 -56.85 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: 0.21 Total: 38.49 kcal Atomic # 6 Polarization: -70.86 SS G_CDS: 3.77 Total: -67.08 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.57 Total: -70.60 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -62.29 5.45 -56.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082715543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.572 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds