Wall clock time and date at job start Tue Mar 31 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38516 * 120.06564 * 359.72424 * 3 2 1 5 5 C 1.38455 * 119.99584 * 179.77075 * 4 3 2 6 6 F 1.35096 * 119.93806 * 180.23492 * 5 4 3 7 7 C 1.38452 * 120.12869 * 0.50487 * 5 4 3 8 8 C 1.38238 * 120.13396 * 359.75258 * 7 5 4 9 9 C 1.38702 * 120.00037 * 359.97438 * 8 7 5 10 10 N 1.40112 * 120.06096 * 179.97438 * 9 8 7 11 11 C 1.46499 * 120.00085 * 0.02562 * 10 9 8 12 12 C 1.53004 * 109.47341 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46825 * 300.00026 * 12 11 10 14 14 C 1.53003 * 109.46997 * 59.99848 * 12 11 10 15 15 C 1.52999 * 109.47302 * 179.97438 * 12 11 10 16 16 C 1.50704 * 109.47068 * 179.97438 * 15 12 11 17 17 H 1.07996 * 119.99782 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99657 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00279 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99449 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47281 * 89.99913 * 20 18 16 22 22 H 1.48508 * 109.47115 * 209.99963 * 20 18 16 23 23 H 1.48506 * 109.47397 * 329.99935 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 27 27 H 1.08005 * 120.00166 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.93252 * 179.72598 * 7 5 4 29 29 H 1.07998 * 119.99938 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00196 * 180.02562 * 10 9 8 31 31 H 1.09002 * 109.47488 * 300.00345 * 11 10 9 32 32 H 1.08997 * 109.47551 * 60.00002 * 11 10 9 33 33 H 1.09002 * 109.47477 * 59.99946 * 13 12 11 34 34 H 1.09004 * 109.47255 * 179.97438 * 13 12 11 35 35 H 1.09000 * 109.47013 * 299.99997 * 13 12 11 36 36 H 1.08997 * 109.46787 * 60.00096 * 14 12 11 37 37 H 1.09004 * 109.46834 * 180.02562 * 14 12 11 38 38 H 1.09002 * 109.47108 * 299.99934 * 14 12 11 39 39 H 1.08991 * 109.47193 * 299.99957 * 15 12 11 40 40 H 1.09008 * 109.47036 * 60.00093 * 15 12 11 41 41 H 0.97006 * 119.99812 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2935 2.3743 -0.0058 5 6 1.9236 3.6072 -0.0010 6 9 1.1880 4.7403 -0.0018 7 6 3.3062 3.6810 -0.0009 8 6 4.0629 2.5242 -0.0006 9 6 3.4374 1.2862 0.0003 10 7 4.2032 0.1129 0.0002 11 6 5.6660 0.1929 -0.0004 12 6 6.2540 -1.2196 -0.0011 13 6 5.7846 -1.9680 1.2481 14 6 5.7837 -1.9672 -1.2504 15 6 7.7817 -1.1361 -0.0023 16 6 8.3609 -2.5274 -0.0023 17 1 7.7049 -3.3853 -0.0020 18 6 9.7282 -2.7049 -0.0028 19 7 10.5269 -1.6601 -0.0027 20 14 10.4460 -4.4294 -0.0036 21 1 10.6358 -4.8860 -1.4039 22 1 11.7559 -4.4207 0.6960 23 1 9.5171 -5.3527 0.6964 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2149 2.3191 -0.0099 28 1 3.7944 4.6444 -0.0017 29 1 5.1412 2.5843 -0.0010 30 1 3.7648 -0.7524 0.0004 31 1 6.0005 0.7257 -0.8905 32 1 6.0011 0.7259 0.8894 33 1 4.6963 -2.0276 1.2486 34 1 6.2032 -2.9745 1.2475 35 1 6.1197 -1.4354 2.1381 36 1 6.1180 -1.4340 -2.1403 37 1 6.2023 -2.9737 -1.2506 38 1 4.6953 -2.0268 -1.2499 39 1 8.1157 -0.6031 -0.8924 40 1 8.1172 -0.6033 0.8876 41 1 11.4889 -1.7850 -0.0034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092118482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:44 Heat of formation + Delta-G solvation = -72.606315 kcal Electronic energy + Delta-G solvation = -21959.895420 eV Core-core repulsion = 18561.045371 eV Total energy + Delta-G solvation = -3398.850050 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.71733 -40.23859 -38.01163 -36.95510 -34.11477 -32.24902 -30.36437 -29.05488 -27.33894 -26.84213 -26.47910 -25.74708 -23.09338 -22.39097 -21.41896 -18.71170 -18.11624 -17.14040 -16.61574 -16.30396 -15.98864 -15.79868 -15.27348 -14.65999 -14.59292 -14.39542 -14.31601 -14.20233 -13.20022 -12.94300 -12.91206 -12.65914 -12.46225 -12.16196 -12.06797 -11.64239 -11.28623 -11.27355 -11.03918 -10.97958 -10.85044 -10.63543 -10.37616 -10.24564 -9.97485 -9.61600 -9.20841 -8.94260 -8.69820 -8.37595 -6.99447 -6.02074 -4.02876 1.24615 1.41650 3.12261 3.29981 3.37051 3.39109 3.68585 3.69175 4.39845 4.44361 4.68468 4.90651 4.98752 4.98930 5.17689 5.31106 5.33892 5.43611 5.49412 5.59694 5.70825 5.80499 6.05592 6.09141 6.15491 6.19731 6.29570 6.30488 6.40274 6.65219 6.65342 6.73258 7.01997 7.07816 7.08039 7.15134 7.57544 7.60757 7.73682 7.96826 7.99574 8.39629 9.01775 9.60453 11.09444 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030127 B = 0.003485 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.179510 B = 8032.710829 C = 8760.224075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.315 6.315 3 C 0.071 3.929 4 C -0.196 4.196 5 C 0.057 3.943 6 F -0.149 7.149 7 C -0.130 4.130 8 C -0.149 4.149 9 C 0.201 3.799 10 N -0.729 5.729 11 C 0.130 3.870 12 C -0.070 4.070 13 C -0.126 4.126 14 C -0.126 4.126 15 C 0.036 3.964 16 C -0.511 4.511 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.405 0.595 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.319 6.579 0.008 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.229 6.229 3 C 0.022 3.978 4 C -0.216 4.216 5 C 0.035 3.965 6 F -0.128 7.128 7 C -0.150 4.150 8 C -0.172 4.172 9 C 0.095 3.905 10 N -0.359 5.359 11 C 0.007 3.993 12 C -0.071 4.071 13 C -0.184 4.184 14 C -0.184 4.184 15 C -0.001 4.001 16 C -0.549 4.549 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.158 0.842 30 H 0.242 0.758 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.852 6.468 0.013 18.988 hybrid contribution -0.032 -0.829 -0.012 0.829 sum -17.885 5.639 0.001 18.753 Atomic orbital electron populations 1.23005 0.78524 1.03773 1.01141 1.86024 1.21165 1.26069 1.89636 1.18119 0.90204 0.84345 1.05116 1.20809 1.00281 0.90856 1.09674 1.17050 0.89046 0.81325 1.09058 1.91439 1.77334 1.49317 1.94679 1.20796 0.91545 0.99434 1.03203 1.20400 1.00405 0.89255 1.07160 1.17355 0.87013 0.88575 0.97568 1.44984 1.05666 1.05059 1.80155 1.21645 0.77972 0.99185 1.00516 1.20856 0.99651 0.91396 0.95162 1.21745 0.97845 1.01634 0.97145 1.21746 0.97848 1.01628 0.97149 1.19094 0.86188 0.97490 0.97329 1.21191 0.91181 0.92370 1.50160 0.92272 1.25000 0.97407 0.96514 0.95531 1.69957 1.03484 1.29073 1.50984 0.86654 0.78593 0.85059 0.78047 1.20765 1.21328 1.19935 0.88325 0.92841 0.92831 0.84757 0.84942 0.84165 0.75796 0.92478 0.92473 0.95057 0.91587 0.93470 0.93469 0.91595 0.95054 0.96413 0.96405 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.86 9.74 -19.75 -0.19 -4.06 16 3 C 0.07 0.93 6.70 -39.09 -0.26 0.67 16 4 C -0.20 -2.37 9.01 -39.40 -0.36 -2.72 16 5 C 0.06 0.73 7.30 -39.42 -0.29 0.44 16 6 F -0.15 -1.93 17.26 2.25 0.04 -1.89 16 7 C -0.13 -1.60 10.02 -39.50 -0.40 -1.99 16 8 C -0.15 -1.95 9.31 -39.41 -0.37 -2.32 16 9 C 0.20 2.84 6.67 -83.51 -0.56 2.28 16 10 N -0.73 -10.75 5.14 -58.47 -0.30 -11.05 16 11 C 0.13 2.12 3.81 -4.04 -0.02 2.10 16 12 C -0.07 -1.31 0.54 -154.51 -0.08 -1.40 16 13 C -0.13 -2.26 8.05 37.16 0.30 -1.97 16 14 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 15 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 16 C -0.51 -13.44 7.65 -34.44 -0.26 -13.70 16 17 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 20 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 26 H 0.05 0.38 7.68 -51.93 -0.40 -0.02 16 27 H 0.13 1.33 6.30 -52.48 -0.33 0.99 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.14 1.75 6.74 -52.49 -0.35 1.40 16 30 H 0.41 5.96 5.53 -40.82 -0.23 5.73 16 31 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 32 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 33 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 34 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 38 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -28.79 332.22 -6.84 -35.63 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.90 Total: 2.73 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.21 Total: -17.11 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.44 Total: -36.37 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.19 Total: -4.06 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.79 -6.84 -35.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092118482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.974 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds