Wall clock time and date at job start Tue Mar 31 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47571 * 2 1 4 4 N 1.46502 * 109.47222 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99825 * 275.40384 * 4 3 2 6 6 H 1.08001 * 120.00490 * 34.03001 * 5 4 3 7 7 C 1.38813 * 119.99631 * 214.03224 * 5 4 3 8 8 N 1.31617 * 120.00217 * 22.98520 * 7 5 4 9 9 Si 1.86804 * 120.00135 * 202.98341 * 7 5 4 10 10 H 1.48501 * 109.46804 * 89.99710 * 9 7 5 11 11 H 1.48496 * 109.47264 * 210.00164 * 9 7 5 12 12 H 1.48499 * 109.46762 * 330.00241 * 9 7 5 13 13 C 1.46505 * 119.99844 * 95.39964 * 4 3 2 14 14 C 1.50700 * 109.46821 * 269.99662 * 13 4 3 15 15 C 1.33391 * 125.20177 * 90.00845 * 14 13 4 16 16 C 1.38422 * 114.92176 * 179.97438 * 15 14 13 17 17 C 1.33387 * 114.92058 * 359.97438 * 16 15 14 18 18 C 1.50701 * 125.20019 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47371 * 60.00067 * 18 17 16 20 20 C 1.53005 * 109.46921 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.47025 * 299.99772 * 18 17 16 22 22 S 1.75877 * 109.59328 * 359.97438 * 17 16 15 23 23 H 1.08993 * 109.47433 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46714 * 300.00375 * 1 2 3 25 25 H 1.09001 * 109.46658 * 59.99862 * 1 2 3 26 26 H 1.09000 * 109.47206 * 239.99444 * 2 1 3 27 27 H 1.09001 * 109.46658 * 120.00137 * 2 1 3 28 28 H 1.08993 * 109.46943 * 59.99528 * 3 2 1 29 29 H 1.09000 * 109.46765 * 299.99556 * 3 2 1 30 30 H 0.97005 * 120.00198 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46738 * 150.00043 * 13 4 3 32 32 H 1.08993 * 109.47070 * 30.00107 * 13 4 3 33 33 H 1.07999 * 122.53751 * 0.24006 * 15 14 13 34 34 H 1.08007 * 122.53912 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.46835 * 59.99634 * 19 18 17 36 36 H 1.09003 * 109.47076 * 179.97438 * 19 18 17 37 37 H 1.09006 * 109.46964 * 300.00203 * 19 18 17 38 38 H 1.08998 * 109.47127 * 59.99649 * 20 18 17 39 39 H 1.09004 * 109.47042 * 180.02562 * 20 18 17 40 40 H 1.08996 * 109.46972 * 299.99739 * 20 18 17 41 41 H 1.08998 * 109.47164 * 60.00652 * 21 18 17 42 42 H 1.09004 * 109.46709 * 179.97438 * 21 18 17 43 43 H 1.08995 * 109.47454 * 299.99741 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1903 1.3304 1.1797 6 1 3.7893 0.7287 1.9820 7 6 5.4002 1.9905 1.3451 8 7 5.6799 3.0459 0.6102 9 14 6.6314 1.3808 2.6108 10 1 7.5413 0.3914 1.9796 11 1 7.4247 2.5273 3.1220 12 1 5.9068 0.7389 3.7369 13 6 4.2371 1.5619 -1.2641 14 6 4.4880 0.1883 -1.8311 15 6 3.6719 -0.4611 -2.6627 16 6 4.1128 -1.7139 -3.0527 17 6 5.2873 -2.0816 -2.5382 18 6 5.9812 -3.3921 -2.8069 19 6 6.2611 -3.5233 -4.3053 20 6 7.3015 -3.4377 -2.0350 21 6 5.0853 -4.5462 -2.3524 22 16 5.9027 -0.8026 -1.4997 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6769 1.9562 -0.8900 30 1 6.5253 3.5074 0.7260 31 1 5.1896 2.0611 -1.0862 32 1 3.6478 2.1450 -1.9716 33 1 2.7398 -0.0395 -3.0090 34 1 3.5487 -2.3457 -3.7228 35 1 6.8993 -2.7011 -4.6290 36 1 6.7634 -4.4710 -4.4995 37 1 5.3202 -3.4910 -4.8549 38 1 7.1018 -3.3444 -0.9676 39 1 7.8037 -4.3854 -2.2297 40 1 7.9399 -2.6155 -2.3584 41 1 4.1445 -4.5139 -2.9019 42 1 5.5871 -5.4940 -2.5471 43 1 4.8860 -4.4528 -1.2849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:22 Heat of formation + Delta-G solvation = 23.811670 kcal Electronic energy + Delta-G solvation = -20690.485114 eV Core-core repulsion = 17862.029238 eV Total energy + Delta-G solvation = -2828.455876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.20843 -36.64763 -35.10389 -32.97100 -30.91928 -28.92985 -27.26797 -27.16105 -25.66564 -25.35167 -22.94122 -21.45734 -20.14726 -19.97345 -17.81480 -16.62328 -16.06279 -14.93942 -14.81199 -14.35707 -14.14965 -13.85952 -13.75679 -13.39633 -13.20995 -12.68386 -12.48608 -12.36078 -12.21647 -11.72767 -11.59019 -11.55593 -11.38669 -11.24073 -11.05396 -10.98291 -10.79240 -10.74354 -10.71364 -10.44167 -10.34623 -10.05624 -9.94545 -9.70631 -9.65619 -8.52752 -7.64848 -7.63684 -6.68631 -5.85624 -3.37443 1.82246 2.46102 2.95516 3.35288 3.42975 3.44666 3.49922 4.46107 4.82967 5.01659 5.09774 5.25197 5.49747 5.50847 5.65876 5.67312 5.70584 5.76278 5.84671 5.87789 5.93328 5.94687 6.07716 6.10968 6.11463 6.23022 6.27679 6.39992 6.41123 6.42727 6.48957 6.57786 6.64783 6.66915 6.91898 6.98753 7.11867 7.18773 7.27211 7.61171 7.78286 8.43526 9.11460 9.75178 10.31162 11.14631 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.007185 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.474925 B = 3896.136865 C = 5086.326822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.150 3.850 4 N -0.572 5.572 5 C -0.250 4.250 6 H 0.062 0.938 7 C 0.012 3.988 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.193 3.807 14 C -0.134 4.134 15 C -0.177 4.177 16 C -0.127 4.127 17 C -0.207 4.207 18 C 0.009 3.991 19 C -0.132 4.132 20 C -0.148 4.148 21 C -0.134 4.134 22 S 0.106 5.894 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.256 0.744 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 -10.585 -7.699 13.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.023 3.977 4 N -0.290 5.290 5 C -0.380 4.380 6 H 0.080 0.920 7 C -0.188 4.188 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.201 1.201 13 C 0.065 3.935 14 C -0.255 4.255 15 C -0.207 4.207 16 C -0.158 4.158 17 C -0.325 4.325 18 C 0.007 3.993 19 C -0.191 4.191 20 C -0.206 4.206 21 C -0.192 4.192 22 S 0.372 5.628 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.033 -10.193 -6.764 12.233 hybrid contribution -0.729 -0.618 -0.189 0.975 sum -0.763 -10.811 -6.953 12.877 Atomic orbital electron populations 1.21718 0.97505 1.00269 1.00883 1.22165 0.93573 1.00970 1.01972 1.20914 0.84781 0.93135 0.98832 1.43783 0.99501 1.83833 1.01875 1.19047 1.03094 1.23120 0.92750 0.92022 1.25038 1.00490 0.94893 0.98384 1.69961 1.23727 1.16711 1.42290 0.86501 0.81896 0.78390 0.81526 1.20746 1.21641 1.20128 1.19763 1.00941 0.86932 0.85850 1.26201 0.96047 1.04043 0.99240 1.19830 1.01628 0.95618 1.03655 1.19779 0.96283 0.96993 1.02776 1.24339 1.01208 1.00654 1.06296 1.18939 0.94353 0.90419 0.95592 1.21857 1.01583 1.01230 0.94387 1.21948 0.96302 1.01739 1.00608 1.21865 0.99121 0.96506 1.01672 1.84418 1.23398 1.08650 1.46356 0.93928 0.93358 0.93505 0.92161 0.92705 0.93662 0.94703 0.93357 0.87250 0.93717 0.85940 0.86315 0.92539 0.92745 0.92593 0.92082 0.92319 0.92207 0.92614 0.92766 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.83 16 2 C -0.15 -2.74 6.23 -26.73 -0.17 -2.90 16 3 C 0.15 3.13 5.72 -4.04 -0.02 3.11 16 4 N -0.57 -13.88 2.44 -174.61 -0.43 -14.31 16 5 C -0.25 -6.68 9.48 -15.06 -0.14 -6.82 16 6 H 0.06 1.68 7.93 -52.49 -0.42 1.26 16 7 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 8 N -0.88 -24.75 11.32 55.49 0.63 -24.12 16 9 Si 0.89 21.43 29.61 -169.99 -5.03 16.40 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.19 4.50 5.82 -5.19 -0.03 4.47 16 14 C -0.13 -2.80 6.05 -36.00 -0.22 -3.02 16 15 C -0.18 -3.29 8.41 -41.21 -0.35 -3.64 16 16 C -0.13 -2.13 9.31 -41.21 -0.38 -2.51 16 17 C -0.21 -3.47 5.13 -36.00 -0.18 -3.65 16 18 C 0.01 0.12 0.91 -155.66 -0.14 -0.02 16 19 C -0.13 -1.54 8.34 37.16 0.31 -1.23 16 20 C -0.15 -1.95 7.56 37.16 0.28 -1.66 16 21 C -0.13 -1.63 8.33 37.16 0.31 -1.32 16 22 S 0.11 2.12 21.82 -107.50 -2.35 -0.23 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.16 6.34 -51.93 -0.33 0.83 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.03 0.68 7.83 -51.93 -0.41 0.28 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.11 2.87 5.32 -51.93 -0.28 2.60 16 32 H 0.04 0.99 7.86 -51.93 -0.41 0.58 16 33 H 0.12 2.13 8.03 -52.49 -0.42 1.71 16 34 H 0.12 1.73 8.01 -52.48 -0.42 1.31 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.63 7.94 -51.93 -0.41 0.22 16 38 H 0.06 0.87 7.96 -51.93 -0.41 0.46 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 41 H 0.05 0.66 7.94 -51.93 -0.41 0.25 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -27.44 355.46 -9.97 -37.41 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.69 Total: 0.27 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -0.45 Total: -20.78 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.20 Total: -38.43 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.35 Total: -0.23 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.44 -9.97 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.218 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds