Wall clock time and date at job start Tue Mar 31 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47571 * 2 1 4 4 N 1.46502 * 109.47222 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99825 * 275.40384 * 4 3 2 6 6 H 1.08001 * 120.00490 * 34.03001 * 5 4 3 7 7 C 1.38813 * 119.99631 * 214.03224 * 5 4 3 8 8 N 1.31617 * 120.00217 * 22.98520 * 7 5 4 9 9 Si 1.86804 * 120.00135 * 202.98341 * 7 5 4 10 10 H 1.48501 * 109.46804 * 89.99710 * 9 7 5 11 11 H 1.48496 * 109.47264 * 210.00164 * 9 7 5 12 12 H 1.48499 * 109.46762 * 330.00241 * 9 7 5 13 13 C 1.46505 * 119.99844 * 95.39964 * 4 3 2 14 14 C 1.50700 * 109.46821 * 269.99662 * 13 4 3 15 15 C 1.33391 * 125.20177 * 90.00845 * 14 13 4 16 16 C 1.38422 * 114.92176 * 179.97438 * 15 14 13 17 17 C 1.33387 * 114.92058 * 359.97438 * 16 15 14 18 18 C 1.50701 * 125.20019 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47371 * 60.00067 * 18 17 16 20 20 C 1.53005 * 109.46921 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.47025 * 299.99772 * 18 17 16 22 22 S 1.75877 * 109.59328 * 359.97438 * 17 16 15 23 23 H 1.08993 * 109.47433 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46714 * 300.00375 * 1 2 3 25 25 H 1.09001 * 109.46658 * 59.99862 * 1 2 3 26 26 H 1.09000 * 109.47206 * 239.99444 * 2 1 3 27 27 H 1.09001 * 109.46658 * 120.00137 * 2 1 3 28 28 H 1.08993 * 109.46943 * 59.99528 * 3 2 1 29 29 H 1.09000 * 109.46765 * 299.99556 * 3 2 1 30 30 H 0.97005 * 120.00198 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46738 * 150.00043 * 13 4 3 32 32 H 1.08993 * 109.47070 * 30.00107 * 13 4 3 33 33 H 1.07999 * 122.53751 * 0.24006 * 15 14 13 34 34 H 1.08007 * 122.53912 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.46835 * 59.99634 * 19 18 17 36 36 H 1.09003 * 109.47076 * 179.97438 * 19 18 17 37 37 H 1.09006 * 109.46964 * 300.00203 * 19 18 17 38 38 H 1.08998 * 109.47127 * 59.99649 * 20 18 17 39 39 H 1.09004 * 109.47042 * 180.02562 * 20 18 17 40 40 H 1.08996 * 109.46972 * 299.99739 * 20 18 17 41 41 H 1.08998 * 109.47164 * 60.00652 * 21 18 17 42 42 H 1.09004 * 109.46709 * 179.97438 * 21 18 17 43 43 H 1.08995 * 109.47454 * 299.99741 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1903 1.3304 1.1797 6 1 3.7893 0.7287 1.9820 7 6 5.4002 1.9905 1.3451 8 7 5.6799 3.0459 0.6102 9 14 6.6314 1.3808 2.6108 10 1 7.5413 0.3914 1.9796 11 1 7.4247 2.5273 3.1220 12 1 5.9068 0.7389 3.7369 13 6 4.2371 1.5619 -1.2641 14 6 4.4880 0.1883 -1.8311 15 6 3.6719 -0.4611 -2.6627 16 6 4.1128 -1.7139 -3.0527 17 6 5.2873 -2.0816 -2.5382 18 6 5.9812 -3.3921 -2.8069 19 6 6.2611 -3.5233 -4.3053 20 6 7.3015 -3.4377 -2.0350 21 6 5.0853 -4.5462 -2.3524 22 16 5.9027 -0.8026 -1.4997 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6769 1.9562 -0.8900 30 1 6.5253 3.5074 0.7260 31 1 5.1896 2.0611 -1.0862 32 1 3.6478 2.1450 -1.9716 33 1 2.7398 -0.0395 -3.0090 34 1 3.5487 -2.3457 -3.7228 35 1 6.8993 -2.7011 -4.6290 36 1 6.7634 -4.4710 -4.4995 37 1 5.3202 -3.4910 -4.8549 38 1 7.1018 -3.3444 -0.9676 39 1 7.8037 -4.3854 -2.2297 40 1 7.9399 -2.6155 -2.3584 41 1 4.1445 -4.5139 -2.9019 42 1 5.5871 -5.4940 -2.5471 43 1 4.8860 -4.4528 -1.2849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:22 Heat of formation + Delta-G solvation = 12.568743 kcal Electronic energy + Delta-G solvation = -20690.972644 eV Core-core repulsion = 17862.029238 eV Total energy + Delta-G solvation = -2828.943406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.52410 -38.24082 -36.51977 -34.67204 -32.73180 -30.51039 -28.27649 -28.07409 -27.35495 -27.00287 -24.48670 -23.07246 -21.82181 -21.22265 -19.33309 -18.36695 -17.57839 -16.72557 -16.27876 -15.98848 -15.63415 -15.20743 -14.92342 -14.80363 -14.78160 -14.12364 -13.79261 -13.62857 -13.42703 -13.29814 -13.00245 -12.86474 -12.75445 -12.60388 -12.56165 -12.53233 -12.31159 -12.14369 -12.08672 -11.91714 -11.81041 -11.75757 -11.57741 -11.30436 -11.15426 -10.53835 -9.19433 -9.11045 -8.64865 -7.87744 -5.43811 0.36461 0.97824 1.38988 1.44243 1.47630 1.49327 2.05535 2.47661 3.20415 3.72171 3.77648 3.99976 4.08016 4.26933 4.32847 4.41372 4.49558 4.62822 4.70091 4.73746 4.78101 4.81138 4.83881 4.88771 4.90813 4.97187 5.02143 5.02298 5.13377 5.19964 5.25044 5.25501 5.32293 5.44045 5.44346 5.46758 5.57791 5.65044 5.65652 5.72704 5.92952 6.41680 7.11588 7.81667 8.32875 9.08684 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.007185 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.474925 B = 3896.136865 C = 5086.326822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.147 3.853 4 N -0.587 5.587 5 C -0.253 4.253 6 H 0.049 0.951 7 C -0.026 4.026 8 N -0.912 5.912 9 Si 0.933 3.067 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.271 1.271 13 C 0.201 3.799 14 C -0.166 4.166 15 C -0.157 4.157 16 C -0.135 4.135 17 C -0.180 4.180 18 C 0.004 3.996 19 C -0.128 4.128 20 C -0.148 4.148 21 C -0.130 4.130 22 S 0.050 5.950 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.253 0.747 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -13.238 -9.280 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C 0.022 3.978 4 N -0.306 5.306 5 C -0.383 4.383 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.556 5.556 9 Si 0.761 3.239 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.195 1.195 13 C 0.073 3.927 14 C -0.286 4.286 15 C -0.187 4.187 16 C -0.165 4.165 17 C -0.297 4.297 18 C 0.002 3.998 19 C -0.186 4.186 20 C -0.206 4.206 21 C -0.188 4.188 22 S 0.315 5.685 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.045 -12.856 -8.347 15.364 hybrid contribution -0.448 0.131 0.205 0.510 sum -1.493 -12.725 -8.143 15.181 Atomic orbital electron populations 1.21646 0.94337 1.01717 1.01846 1.21968 0.96194 0.98601 1.00539 1.21028 0.83192 0.94811 0.98801 1.43945 1.00766 1.84325 1.01568 1.19084 1.03495 1.22294 0.93452 0.93282 1.25520 1.01683 0.95119 1.00039 1.70062 1.23831 1.17823 1.43877 0.85779 0.80243 0.77785 0.80053 1.20939 1.21627 1.19531 1.19449 0.99247 0.88356 0.85637 1.25750 0.97489 1.03491 1.01837 1.20085 1.01169 0.95866 1.01587 1.20037 0.96494 0.96654 1.03344 1.24801 1.00751 1.00460 1.03728 1.19171 0.94386 0.88960 0.97269 1.21836 1.02149 1.02280 0.92364 1.21956 0.96374 1.02862 0.99403 1.21850 0.99422 0.96908 1.00640 1.84575 1.24438 1.10981 1.48522 0.92221 0.92963 0.92017 0.92585 0.95056 0.94888 0.93412 0.93785 0.90502 0.93444 0.84563 0.82992 0.93460 0.90227 0.91793 0.93873 0.89508 0.93259 0.91832 0.90146 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.13 -4.86 6.23 30.59 0.19 -4.67 16 3 C 0.15 6.18 5.72 86.38 0.49 6.67 16 4 N -0.59 -29.19 2.44 -706.35 -1.73 -30.91 16 5 C -0.25 -13.92 9.48 84.03 0.80 -13.12 16 6 H 0.05 2.77 7.93 -2.91 -0.02 2.75 16 7 C -0.03 -1.45 4.95 84.86 0.42 -1.03 16 8 N -0.91 -52.95 11.32 21.65 0.25 -52.71 16 9 Si 0.93 45.21 29.61 68.60 2.03 47.24 16 10 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.20 9.63 5.82 85.63 0.50 10.13 16 14 C -0.17 -6.97 6.05 24.59 0.15 -6.82 16 15 C -0.16 -5.56 8.41 21.22 0.18 -5.38 16 16 C -0.14 -4.16 9.31 21.22 0.20 -3.96 16 17 C -0.18 -5.70 5.13 24.59 0.13 -5.57 16 18 C 0.00 0.10 0.91 -52.93 -0.05 0.06 16 19 C -0.13 -2.49 8.34 71.98 0.60 -1.89 16 20 C -0.15 -3.62 7.56 71.98 0.54 -3.08 16 21 C -0.13 -2.71 8.33 71.98 0.60 -2.11 16 22 S 0.05 2.01 21.82 -56.49 -1.23 0.78 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 2.07 6.34 -2.39 -0.02 2.06 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.03 1.44 8.08 -2.39 -0.02 1.42 16 29 H 0.05 1.85 7.83 -2.39 -0.02 1.84 16 30 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 31 H 0.08 4.24 5.32 -2.39 -0.01 4.23 16 32 H 0.05 2.15 7.86 -2.39 -0.02 2.14 16 33 H 0.14 4.42 8.03 -2.91 -0.02 4.40 16 34 H 0.15 3.73 8.01 -2.91 -0.02 3.70 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.15 7.94 -2.38 -0.02 1.13 16 38 H 0.04 1.20 7.96 -2.39 -0.02 1.18 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.29 7.96 -2.39 -0.02 1.27 16 41 H 0.06 1.23 7.94 -2.39 -0.02 1.21 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -61.02 355.46 5.72 -55.30 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.94 Total: 14.18 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 5.46 Total: -33.86 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.48 Total: -83.62 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.23 Total: 0.78 kcal Total: -61.02 5.72 -55.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.864 kcal (2) G-P(sol) polarization free energy of solvation -61.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds