Wall clock time and date at job start Tue Mar 31 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47182 * 2 1 4 4 C 1.36942 * 119.99789 * 275.66048 * 3 2 1 5 5 H 1.07998 * 119.99913 * 34.05127 * 4 3 2 6 6 C 1.38809 * 119.99655 * 214.05488 * 4 3 2 7 7 N 1.31615 * 120.00342 * 22.85408 * 6 4 3 8 8 Si 1.86798 * 119.99897 * 202.85774 * 6 4 3 9 9 H 1.48498 * 109.47151 * 89.99891 * 8 6 4 10 10 H 1.48496 * 109.47136 * 209.99937 * 8 6 4 11 11 H 1.48500 * 109.47120 * 329.99728 * 8 6 4 12 12 C 1.46498 * 120.00146 * 95.65729 * 3 2 1 13 13 C 1.50701 * 109.47181 * 270.00198 * 12 3 2 14 14 C 1.38343 * 119.93736 * 89.99723 * 13 12 3 15 15 C 1.38301 * 120.24335 * 179.97438 * 14 13 12 16 16 C 1.38047 * 120.11912 * 0.28097 * 15 14 13 17 17 C 1.39315 * 119.87346 * 359.42685 * 16 15 14 18 18 C 1.48398 * 120.11656 * 180.29940 * 17 16 15 19 19 C 1.39337 * 120.11598 * 179.97438 * 18 17 16 20 20 C 1.38025 * 119.87139 * 179.69839 * 19 18 17 21 21 C 1.38323 * 120.12141 * 0.59723 * 20 19 18 22 22 C 1.38318 * 120.24144 * 359.67566 * 21 20 19 23 23 C 1.38009 * 120.12573 * 0.02562 * 22 21 20 24 24 C 1.37987 * 119.93928 * 269.97726 * 13 12 3 25 25 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46910 * 299.99622 * 1 2 3 27 27 H 1.08994 * 109.47385 * 59.99929 * 1 2 3 28 28 H 1.09003 * 109.46964 * 239.99705 * 2 1 3 29 29 H 1.08999 * 109.47040 * 120.00384 * 2 1 3 30 30 H 0.96996 * 120.00404 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.46911 * 149.99934 * 12 3 2 32 32 H 1.09004 * 109.46506 * 29.99960 * 12 3 2 33 33 H 1.07998 * 119.88095 * 0.02562 * 14 13 12 34 34 H 1.07996 * 119.94214 * 179.97438 * 15 14 13 35 35 H 1.07996 * 120.05782 * 179.71974 * 16 15 14 36 36 H 1.07995 * 120.06355 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.93592 * 180.31765 * 20 19 18 38 38 H 1.07997 * 119.87232 * 179.70348 * 21 20 19 39 39 H 1.08005 * 119.93603 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.06612 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.06271 * 0.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1363 2.0657 -1.1802 5 1 1.4318 1.8894 -1.9795 6 6 3.1616 2.9862 -1.3491 7 7 4.2520 2.8984 -0.6174 8 14 2.9935 4.3495 -2.6151 9 1 2.3661 5.5376 -1.9827 10 1 4.3374 4.7148 -3.1304 11 1 2.1435 3.8798 -3.7385 12 6 2.3805 2.0302 1.2625 13 6 1.1716 2.7240 1.8355 14 6 0.3274 2.0432 2.6945 15 6 -0.7835 2.6739 3.2245 16 6 -1.0588 3.9857 2.8939 17 6 -0.2087 4.6777 2.0341 18 6 -0.4959 6.0900 1.6804 19 6 0.3546 6.7824 0.8210 20 6 0.0792 8.0939 0.4904 21 6 -1.0319 8.7247 1.0204 22 6 -1.8764 8.0438 1.8785 23 6 -1.6140 6.7303 2.2109 24 6 0.9090 4.0371 1.5028 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.9685 3.5414 -0.7357 31 1 3.1679 2.7619 1.0821 32 1 2.7368 1.2793 1.9678 33 1 0.5371 1.0158 2.9529 34 1 -1.4394 2.1378 3.8942 35 1 -1.9291 4.4758 3.3047 36 1 1.2252 6.2924 0.4107 37 1 0.7350 8.6299 -0.1797 38 1 -1.2409 9.7524 0.7628 39 1 -2.7428 8.5410 2.2891 40 1 -2.2744 6.1994 2.8808 41 1 1.5687 4.5676 0.8320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092399043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:33 Heat of formation + Delta-G solvation = 63.895241 kcal Electronic energy + Delta-G solvation = -21635.653627 eV Core-core repulsion = 18673.491953 eV Total energy + Delta-G solvation = -2962.161673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.52538 -38.06626 -35.79628 -32.48554 -31.88572 -31.36236 -30.57978 -28.66474 -28.44931 -25.62935 -23.63484 -23.19321 -22.50904 -20.86541 -20.50969 -19.69461 -17.26920 -16.59794 -15.58305 -15.41837 -15.14906 -14.75400 -13.92373 -13.88641 -13.74136 -13.50277 -13.41442 -12.99660 -12.96244 -12.65405 -12.40682 -11.95837 -11.83047 -11.34409 -11.21683 -11.12928 -11.06613 -10.75215 -10.61004 -10.41908 -10.32152 -9.97484 -9.92588 -9.82754 -9.26586 -8.79659 -8.53556 -8.07094 -7.58088 -6.65646 -5.83182 -3.36295 1.04612 1.56172 2.05337 2.33418 3.32230 3.41089 3.43508 3.94158 4.43314 4.56325 4.92391 4.96357 5.08478 5.23475 5.26584 5.44505 5.51646 5.60651 5.62031 5.65968 5.80673 5.95490 6.05470 6.13974 6.15079 6.20937 6.37441 6.40063 6.42409 6.58868 6.63215 6.63730 6.64776 6.70850 6.80929 6.90813 7.01222 7.15179 7.15759 7.20817 7.40185 7.60038 7.71539 7.79561 8.46440 9.13961 9.77675 10.33996 11.16578 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.007061 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.460177 B = 3964.663846 C = 5512.221725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 N -0.576 5.576 4 C -0.248 4.248 5 H 0.061 0.939 6 C 0.009 3.991 7 N -0.886 5.886 8 Si 0.888 3.112 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.168 3.832 13 C -0.067 4.067 14 C -0.115 4.115 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.063 4.063 18 C -0.029 4.029 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.083 4.083 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.255 0.745 31 H 0.109 0.891 32 H 0.034 0.966 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 5.486 6.835 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.017 3.983 3 N -0.295 5.295 4 C -0.378 4.378 5 H 0.079 0.921 6 C -0.190 4.190 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.042 3.958 13 C -0.070 4.070 14 C -0.134 4.134 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.063 4.063 18 C -0.029 4.029 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.102 4.102 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.126 5.534 6.785 12.647 hybrid contribution -0.273 0.791 -0.721 1.105 sum -9.399 6.325 6.064 12.850 Atomic orbital electron populations 1.22392 0.99969 0.98909 1.01705 1.20850 0.91812 0.86903 0.98775 1.43759 1.75576 1.08120 1.02067 1.19041 1.07256 1.18535 0.92983 0.92147 1.25029 0.94206 1.01453 0.98354 1.69967 1.04590 1.35886 1.42393 0.86502 0.77049 0.82995 0.81676 1.21006 1.21692 1.20232 1.20154 0.92821 0.97018 0.85813 1.21210 0.99271 0.93370 0.93147 1.21094 0.94999 0.99251 0.98020 1.20905 0.97938 0.94874 1.00934 1.20923 0.99320 0.94888 0.99634 1.18762 0.96432 0.92036 0.99040 1.18926 0.94682 0.92862 0.96388 1.21444 0.99676 0.94494 0.97229 1.21099 0.97582 0.94965 0.99902 1.21118 0.95552 0.99736 0.98430 1.21005 0.99564 0.94677 0.98787 1.21202 0.97193 0.94832 1.00382 1.21185 0.96079 0.94855 0.98087 0.94680 0.93120 0.93372 0.93761 0.94709 0.93441 0.87364 0.94793 0.86989 0.87019 0.86937 0.85328 0.86155 0.86459 0.86333 0.85969 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.20 37.16 0.38 -2.80 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.96 16 3 N -0.58 -13.96 2.44 -174.61 -0.43 -14.39 16 4 C -0.25 -6.62 9.48 -15.06 -0.14 -6.76 16 5 H 0.06 1.65 7.93 -52.49 -0.42 1.23 16 6 C 0.01 0.25 4.95 -17.43 -0.09 0.16 16 7 N -0.89 -24.52 11.31 55.49 0.63 -23.90 16 8 Si 0.89 21.08 29.61 -169.99 -5.03 16.05 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.17 3.85 5.45 -5.19 -0.03 3.82 16 13 C -0.07 -1.37 5.44 -104.67 -0.57 -1.94 16 14 C -0.11 -2.04 7.86 -39.52 -0.31 -2.35 16 15 C -0.13 -2.04 10.03 -39.63 -0.40 -2.43 16 16 C -0.13 -2.08 9.43 -39.25 -0.37 -2.45 16 17 C -0.06 -1.14 5.88 -104.90 -0.62 -1.75 16 18 C -0.03 -0.48 5.88 -104.90 -0.62 -1.10 16 19 C -0.11 -1.87 9.43 -39.25 -0.37 -2.25 16 20 C -0.12 -1.70 10.03 -39.63 -0.40 -2.10 16 21 C -0.13 -1.65 10.04 -39.52 -0.40 -2.05 16 22 C -0.12 -1.53 10.03 -39.64 -0.40 -1.93 16 23 C -0.12 -1.67 9.43 -39.26 -0.37 -2.04 16 24 C -0.08 -1.71 9.08 -39.26 -0.36 -2.07 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.94 6.13 -51.93 -0.32 0.63 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.95 8.09 -51.93 -0.42 0.53 16 29 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 31 H 0.11 2.79 5.25 -51.93 -0.27 2.52 16 32 H 0.03 0.74 7.80 -51.93 -0.40 0.33 16 33 H 0.11 1.84 8.02 -52.49 -0.42 1.42 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.51 6.21 -52.49 -0.33 1.18 16 36 H 0.13 2.34 6.21 -52.49 -0.33 2.02 16 37 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.12 1.48 6.21 -52.48 -0.33 1.16 16 41 H 0.12 2.70 6.21 -52.48 -0.33 2.37 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -28.27 336.48 -10.47 -38.74 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.63 Total: 5.50 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -5.07 Total: -27.07 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.20 Total: -38.28 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.27 -10.47 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.635 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds