Wall clock time and date at job start Tue Mar 31 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47182 * 2 1 4 4 C 1.36942 * 119.99789 * 275.66048 * 3 2 1 5 5 H 1.07998 * 119.99913 * 34.05127 * 4 3 2 6 6 C 1.38809 * 119.99655 * 214.05488 * 4 3 2 7 7 N 1.31615 * 120.00342 * 22.85408 * 6 4 3 8 8 Si 1.86798 * 119.99897 * 202.85774 * 6 4 3 9 9 H 1.48498 * 109.47151 * 89.99891 * 8 6 4 10 10 H 1.48496 * 109.47136 * 209.99937 * 8 6 4 11 11 H 1.48500 * 109.47120 * 329.99728 * 8 6 4 12 12 C 1.46498 * 120.00146 * 95.65729 * 3 2 1 13 13 C 1.50701 * 109.47181 * 270.00198 * 12 3 2 14 14 C 1.38343 * 119.93736 * 89.99723 * 13 12 3 15 15 C 1.38301 * 120.24335 * 179.97438 * 14 13 12 16 16 C 1.38047 * 120.11912 * 0.28097 * 15 14 13 17 17 C 1.39315 * 119.87346 * 359.42685 * 16 15 14 18 18 C 1.48398 * 120.11656 * 180.29940 * 17 16 15 19 19 C 1.39337 * 120.11598 * 179.97438 * 18 17 16 20 20 C 1.38025 * 119.87139 * 179.69839 * 19 18 17 21 21 C 1.38323 * 120.12141 * 0.59723 * 20 19 18 22 22 C 1.38318 * 120.24144 * 359.67566 * 21 20 19 23 23 C 1.38009 * 120.12573 * 0.02562 * 22 21 20 24 24 C 1.37987 * 119.93928 * 269.97726 * 13 12 3 25 25 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46910 * 299.99622 * 1 2 3 27 27 H 1.08994 * 109.47385 * 59.99929 * 1 2 3 28 28 H 1.09003 * 109.46964 * 239.99705 * 2 1 3 29 29 H 1.08999 * 109.47040 * 120.00384 * 2 1 3 30 30 H 0.96996 * 120.00404 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.46911 * 149.99934 * 12 3 2 32 32 H 1.09004 * 109.46506 * 29.99960 * 12 3 2 33 33 H 1.07998 * 119.88095 * 0.02562 * 14 13 12 34 34 H 1.07996 * 119.94214 * 179.97438 * 15 14 13 35 35 H 1.07996 * 120.05782 * 179.71974 * 16 15 14 36 36 H 1.07995 * 120.06355 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.93592 * 180.31765 * 20 19 18 38 38 H 1.07997 * 119.87232 * 179.70348 * 21 20 19 39 39 H 1.08005 * 119.93603 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.06612 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.06271 * 0.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1363 2.0657 -1.1802 5 1 1.4318 1.8894 -1.9795 6 6 3.1616 2.9862 -1.3491 7 7 4.2520 2.8984 -0.6174 8 14 2.9935 4.3495 -2.6151 9 1 2.3661 5.5376 -1.9827 10 1 4.3374 4.7148 -3.1304 11 1 2.1435 3.8798 -3.7385 12 6 2.3805 2.0302 1.2625 13 6 1.1716 2.7240 1.8355 14 6 0.3274 2.0432 2.6945 15 6 -0.7835 2.6739 3.2245 16 6 -1.0588 3.9857 2.8939 17 6 -0.2087 4.6777 2.0341 18 6 -0.4959 6.0900 1.6804 19 6 0.3546 6.7824 0.8210 20 6 0.0792 8.0939 0.4904 21 6 -1.0319 8.7247 1.0204 22 6 -1.8764 8.0438 1.8785 23 6 -1.6140 6.7303 2.2109 24 6 0.9090 4.0371 1.5028 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.9685 3.5414 -0.7357 31 1 3.1679 2.7619 1.0821 32 1 2.7368 1.2793 1.9678 33 1 0.5371 1.0158 2.9529 34 1 -1.4394 2.1378 3.8942 35 1 -1.9291 4.4758 3.3047 36 1 1.2252 6.2924 0.4107 37 1 0.7350 8.6299 -0.1797 38 1 -1.2409 9.7524 0.7628 39 1 -2.7428 8.5410 2.2891 40 1 -2.2744 6.1994 2.8808 41 1 1.5687 4.5676 0.8320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092399043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:32 Heat of formation + Delta-G solvation = 52.238955 kcal Electronic energy + Delta-G solvation = -21636.159081 eV Core-core repulsion = 18673.491953 eV Total energy + Delta-G solvation = -2962.667128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78840 -39.36318 -37.53053 -33.98507 -33.60989 -32.73677 -31.79279 -30.32564 -29.75439 -27.43699 -25.34436 -24.44554 -23.75713 -22.36160 -21.95027 -21.16583 -18.76907 -18.24527 -17.02583 -16.81433 -16.51769 -16.25997 -15.67587 -15.55978 -15.05102 -14.93025 -14.68366 -14.27916 -14.25136 -14.09003 -13.99662 -13.43967 -13.27658 -13.02985 -12.97428 -12.70861 -12.38655 -12.35973 -12.29011 -11.99628 -11.93336 -11.66417 -11.57347 -11.43959 -10.56567 -10.49312 -9.89589 -9.53230 -8.85710 -8.63398 -7.86291 -5.43661 -0.17783 0.45981 0.65105 1.07300 1.37167 1.40895 1.47549 2.45370 2.75418 3.15253 3.24385 3.71371 3.84111 3.86361 4.05076 4.14963 4.21635 4.30026 4.41367 4.42724 4.49570 4.54386 4.62925 4.67752 4.79397 4.85932 4.90270 5.03258 5.06846 5.09230 5.23396 5.27586 5.29909 5.44356 5.50560 5.57117 5.57376 5.58392 5.66510 5.72149 5.88118 6.00757 6.09541 6.24080 6.44614 7.12802 7.84122 8.34245 9.09103 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.007061 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.460177 B = 3964.663846 C = 5512.221725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 N -0.591 5.591 4 C -0.253 4.253 5 H 0.048 0.952 6 C -0.030 4.030 7 N -0.912 5.912 8 Si 0.937 3.063 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.273 1.273 12 C 0.174 3.826 13 C -0.085 4.085 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.068 4.068 18 C -0.057 4.057 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.112 4.112 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.252 0.748 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.127 0.873 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.990 6.360 8.618 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.311 5.311 4 C -0.384 4.384 5 H 0.066 0.934 6 C -0.227 4.227 7 N -0.556 5.556 8 Si 0.765 3.235 9 H -0.211 1.211 10 H -0.216 1.216 11 H -0.198 1.198 12 C 0.048 3.952 13 C -0.088 4.088 14 C -0.138 4.138 15 C -0.134 4.134 16 C -0.141 4.141 17 C -0.068 4.068 18 C -0.057 4.057 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.140 4.140 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.131 4.131 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.113 0.887 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.177 0.823 40 H 0.166 0.834 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.804 6.397 8.575 16.685 hybrid contribution 0.801 0.573 -1.213 1.562 sum -12.003 6.970 7.362 15.711 Atomic orbital electron populations 1.22208 0.97782 1.00726 1.00727 1.20987 0.93450 0.85290 0.99017 1.43945 1.75985 1.09467 1.01748 1.19099 1.06578 1.19000 0.93710 0.93394 1.25534 0.94074 1.02983 1.00094 1.70071 1.05155 1.36473 1.43936 0.85736 0.76802 0.80962 0.79967 1.21058 1.21636 1.19807 1.19926 0.93365 0.96324 0.85613 1.20915 0.99147 0.93589 0.95102 1.21227 0.95214 0.99878 0.97447 1.21344 0.97148 0.94775 1.00116 1.21359 0.99565 0.95027 0.98177 1.18997 0.95740 0.93046 0.98973 1.19040 0.96302 0.92558 0.97759 1.21389 0.99596 0.96025 0.98953 1.21311 0.98896 0.94067 1.00441 1.21549 0.94106 1.01167 0.97172 1.21495 1.00245 0.93961 0.97606 1.21507 0.96117 0.95697 1.00064 1.21025 0.97455 0.95324 0.99332 0.91347 0.92895 0.95450 0.94912 0.93003 0.93875 0.90929 0.94280 0.85506 0.82808 0.83222 0.88719 0.85213 0.83004 0.82322 0.83429 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.63 10.20 71.98 0.73 -4.89 16 2 C 0.14 5.80 6.44 86.38 0.56 6.36 16 3 N -0.59 -29.78 2.44 -706.33 -1.73 -31.50 16 4 C -0.25 -14.17 9.48 84.03 0.80 -13.38 16 5 H 0.05 2.75 7.93 -2.91 -0.02 2.72 16 6 C -0.03 -1.66 4.95 84.86 0.42 -1.24 16 7 N -0.91 -53.56 11.31 21.65 0.24 -53.31 16 8 Si 0.94 45.73 29.61 68.60 2.03 47.76 16 9 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 10 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 12 C 0.17 8.37 5.45 85.63 0.47 8.84 16 13 C -0.08 -3.59 5.44 -19.90 -0.11 -3.70 16 14 C -0.12 -4.06 7.86 22.31 0.18 -3.88 16 15 C -0.12 -3.27 10.03 22.24 0.22 -3.05 16 16 C -0.12 -3.60 9.43 22.48 0.21 -3.39 16 17 C -0.07 -2.46 5.88 -20.04 -0.12 -2.57 16 18 C -0.06 -1.89 5.88 -20.04 -0.12 -2.01 16 19 C -0.14 -5.05 9.43 22.48 0.21 -4.83 16 20 C -0.13 -3.70 10.03 22.24 0.22 -3.47 16 21 C -0.12 -2.71 10.04 22.31 0.22 -2.48 16 22 C -0.12 -2.39 10.03 22.23 0.22 -2.17 16 23 C -0.12 -2.92 9.43 22.48 0.21 -2.70 16 24 C -0.11 -4.90 9.08 22.48 0.20 -4.70 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.88 6.13 -2.39 -0.01 1.87 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 29 H 0.05 1.98 7.83 -2.39 -0.02 1.96 16 30 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.07 4.05 5.25 -2.39 -0.01 4.04 16 32 H 0.04 1.76 7.80 -2.38 -0.02 1.75 16 33 H 0.13 3.88 8.02 -2.91 -0.02 3.86 16 34 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.15 3.22 6.21 -2.91 -0.02 3.20 16 36 H 0.09 3.91 6.21 -2.91 -0.02 3.89 16 37 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 38 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 40 H 0.15 2.85 6.21 -2.91 -0.02 2.83 16 41 H 0.09 4.30 6.21 -2.91 -0.02 4.29 16 Total: -1.00 -66.01 336.48 6.10 -59.90 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 1.01 Total: 20.43 kcal Atomic # 6 Polarization: -47.83 SS G_CDS: 4.54 Total: -43.29 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -1.48 Total: -84.81 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -66.01 6.10 -59.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.143 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds