Wall clock time and date at job start Tue Mar 31 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33386 * 125.20409 * 2 1 4 4 C 1.38420 * 114.91941 * 179.97438 * 3 2 1 5 5 C 1.33387 * 114.92540 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.20536 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.46922 * 90.00273 * 6 5 4 8 8 C 1.46899 * 111.00091 * 293.95134 * 7 6 5 9 9 C 1.46899 * 110.99742 * 169.99973 * 7 6 5 10 10 C 1.53009 * 109.47061 * 209.38482 * 9 7 6 11 11 C 1.53006 * 109.46562 * 300.33883 * 10 9 7 12 12 C 1.52996 * 109.47083 * 60.33659 * 10 9 7 13 13 C 1.53004 * 109.47124 * 180.34462 * 10 9 7 14 14 C 1.50693 * 109.46670 * 179.97438 * 13 10 9 15 15 H 1.07995 * 120.00393 * 359.97438 * 14 13 10 16 16 C 1.37882 * 119.99716 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99759 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00002 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47159 * 60.00234 * 18 16 14 20 20 H 1.48498 * 109.47385 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47123 * 300.00250 * 18 16 14 22 22 S 1.75885 * 125.19929 * 179.68788 * 2 1 3 23 23 H 1.09000 * 109.46899 * 90.00478 * 1 2 3 24 24 H 1.08996 * 109.47185 * 330.00385 * 1 2 3 25 25 H 1.08998 * 109.47172 * 210.00248 * 1 2 3 26 26 H 1.07996 * 122.53931 * 359.95323 * 3 2 1 27 27 H 1.08000 * 122.53961 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.47390 * 209.99774 * 6 5 4 29 29 H 1.08999 * 109.47203 * 330.00269 * 6 5 4 30 30 H 1.08999 * 109.46577 * 67.58370 * 8 7 6 31 31 H 1.08993 * 109.47370 * 187.58203 * 8 7 6 32 32 H 1.08994 * 109.47073 * 307.58548 * 8 7 6 33 33 H 1.08996 * 109.47578 * 329.38056 * 9 7 6 34 34 H 1.09001 * 109.47520 * 89.38361 * 9 7 6 35 35 H 1.09000 * 109.46621 * 68.65978 * 11 10 9 36 36 H 1.09004 * 109.46747 * 188.65697 * 11 10 9 37 37 H 1.08993 * 109.47497 * 308.65785 * 11 10 9 38 38 H 1.09001 * 109.46672 * 60.00592 * 12 10 9 39 39 H 1.08999 * 109.46929 * 180.02562 * 12 10 9 40 40 H 1.08993 * 109.47805 * 300.00143 * 12 10 9 41 41 H 1.09001 * 109.46280 * 299.99561 * 13 10 9 42 42 H 1.08998 * 109.47099 * 59.99360 * 13 10 9 43 43 H 0.97001 * 119.99698 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 3.9751 -0.4478 0.0016 6 6 5.3861 -0.9771 0.0018 7 7 5.8447 -1.1481 1.3869 8 6 5.9578 0.1487 2.0678 9 6 7.1175 -1.8799 1.4334 10 6 7.2084 -2.6622 2.7453 11 6 7.1269 -1.6911 3.9248 12 6 6.0512 -3.6599 2.8252 13 6 8.5379 -3.4177 2.7975 14 6 8.6275 -4.1876 4.0898 15 1 7.8175 -4.1424 4.8027 16 6 9.7437 -4.9500 4.3621 17 7 10.7302 -5.0047 3.4941 18 14 9.8546 -5.9050 5.9636 19 1 8.7313 -6.8731 6.0414 20 1 11.1450 -6.6381 6.0145 21 1 9.7759 -4.9624 7.1085 22 16 2.5209 -1.4372 0.0078 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8899 0.5139 26 1 1.8670 2.0894 -0.0007 27 1 4.3721 1.6349 0.0002 28 1 5.4136 -1.9385 -0.5113 29 1 6.0388 -0.2719 -0.5127 30 1 4.9645 0.5776 2.1997 31 1 6.4250 0.0078 3.0424 32 1 6.5678 0.8227 1.4665 33 1 7.1695 -2.5723 0.5933 34 1 7.9454 -1.1734 1.3737 35 1 6.1244 -1.2666 3.9773 36 1 7.3447 -2.2244 4.8502 37 1 7.8537 -0.8905 3.7872 38 1 6.1093 -4.3517 1.9849 39 1 6.1157 -4.2169 3.7600 40 1 5.1041 -3.1218 2.7880 41 1 8.5958 -4.1095 1.9572 42 1 9.3622 -2.7068 2.7405 43 1 11.5157 -5.5407 3.6858 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093049492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:44 Heat of formation + Delta-G solvation = 25.056846 kcal Electronic energy + Delta-G solvation = -20080.502306 eV Core-core repulsion = 17252.100425 eV Total energy + Delta-G solvation = -2828.401881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.79489 -37.65190 -35.08513 -32.48722 -31.76795 -28.77754 -27.55090 -26.84643 -25.92829 -24.87099 -23.21297 -22.68254 -21.21848 -18.86403 -17.91138 -16.80023 -16.17012 -15.43509 -15.29457 -15.06423 -14.38801 -14.08276 -13.96938 -13.29711 -13.23632 -12.92599 -12.75291 -12.48685 -12.39855 -12.20804 -11.97284 -11.90485 -11.61926 -11.26674 -11.14613 -10.84763 -10.74693 -10.68004 -10.57465 -10.35003 -10.32510 -9.95977 -9.56295 -8.94982 -8.84829 -8.52225 -8.43633 -8.28652 -7.93515 -5.93595 -3.93335 0.96116 1.61183 2.03691 2.68725 3.36754 3.41163 3.43689 4.29952 4.52402 4.72799 4.86641 5.08764 5.17067 5.29846 5.39301 5.42135 5.49837 5.58075 5.62165 5.67051 5.74297 5.78910 5.94727 6.07537 6.13354 6.21002 6.23323 6.29797 6.35597 6.49908 6.60444 6.74955 6.84507 6.90057 7.24411 7.25821 7.29893 7.38818 7.50655 7.73847 7.89222 8.07078 8.52063 9.11886 9.69156 11.18110 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034697 B = 0.003406 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.792872 B = 8217.823977 C = 8468.678745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.194 4.194 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.154 4.154 6 C 0.120 3.880 7 N -0.528 5.528 8 C 0.004 3.996 9 C 0.065 3.935 10 C -0.051 4.051 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.887 3.113 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 S 0.120 5.880 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.014 0.986 42 H 0.012 0.988 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.037 11.795 -8.277 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.312 4.312 3 C -0.170 4.170 4 C -0.172 4.172 5 C -0.272 4.272 6 C -0.009 4.009 7 N -0.252 5.252 8 C -0.144 4.144 9 C -0.062 4.062 10 C -0.051 4.051 11 C -0.189 4.189 12 C -0.173 4.173 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.204 1.204 22 S 0.385 5.615 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.030 0.970 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.481 9.869 -8.052 21.629 hybrid contribution 1.176 1.506 0.389 1.949 sum -16.306 11.375 -7.663 21.307 Atomic orbital electron populations 1.20292 0.88173 1.02967 1.02420 1.24507 0.99864 0.96360 1.10438 1.19976 0.92905 0.98949 1.05142 1.20023 0.96069 0.95876 1.05230 1.24376 0.98607 0.96128 1.08086 1.20619 0.88794 1.00330 0.91168 1.61980 1.31035 1.19126 1.13040 1.22936 1.01173 0.89492 1.00756 1.22372 0.87706 0.96207 0.99938 1.20556 0.98323 0.94627 0.91625 1.21987 0.98842 0.98287 0.99764 1.21590 0.96806 0.97832 1.01065 1.19122 0.89836 0.94398 0.97030 1.21206 1.02542 1.27239 1.03423 0.92300 1.25012 0.95999 0.96978 0.96597 1.69958 1.07473 1.41110 1.35316 0.86732 0.77128 0.80234 0.84347 1.20306 1.21476 1.20360 1.84342 0.96088 1.08780 1.72337 0.91047 0.90828 0.91414 0.84914 0.84917 0.89902 0.93350 0.92034 0.88875 0.96453 0.91785 0.94672 0.93573 0.91846 0.94414 0.94524 0.92743 0.93726 0.96813 0.96986 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.38 36.01 0.37 -0.23 16 2 C -0.19 -2.04 6.51 -36.00 -0.23 -2.27 16 3 C -0.14 -1.46 10.05 -41.21 -0.41 -1.87 16 4 C -0.14 -1.60 8.80 -41.21 -0.36 -1.97 16 5 C -0.15 -1.92 5.44 -36.00 -0.20 -2.11 16 6 C 0.12 1.58 5.39 -4.97 -0.03 1.55 16 7 N -0.53 -7.93 3.77 -244.37 -0.92 -8.85 16 8 C 0.00 0.06 8.33 60.06 0.50 0.56 16 9 C 0.06 1.12 4.24 -3.82 -0.02 1.11 16 10 C -0.05 -1.02 0.60 -154.50 -0.09 -1.11 16 11 C -0.13 -2.51 6.67 37.16 0.25 -2.26 16 12 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 13 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -13.90 7.53 -34.44 -0.26 -14.16 16 15 H 0.06 1.58 5.72 -52.49 -0.30 1.28 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 S 0.12 1.43 23.31 -107.50 -2.51 -1.07 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.08 1.08 7.79 -51.93 -0.40 0.68 16 29 H 0.05 0.60 8.04 -51.93 -0.42 0.18 16 30 H 0.06 0.82 6.78 -51.93 -0.35 0.46 16 31 H 0.09 1.36 3.89 -51.93 -0.20 1.16 16 32 H 0.02 0.22 8.03 -51.93 -0.42 -0.20 16 33 H 0.06 1.11 7.57 -51.93 -0.39 0.71 16 34 H 0.03 0.62 7.85 -51.93 -0.41 0.21 16 35 H 0.05 0.79 6.21 -51.93 -0.32 0.47 16 36 H 0.06 1.33 6.38 -51.93 -0.33 0.99 16 37 H 0.04 0.69 7.47 -51.93 -0.39 0.30 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 40 H 0.04 0.82 7.61 -51.93 -0.40 0.42 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -29.50 345.96 -10.08 -39.58 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.19 Total: -2.75 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -0.39 Total: -22.58 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.18 Total: -35.09 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.51 Total: -1.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.50 -10.08 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093049492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.635 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds