Wall clock time and date at job start Tue Mar 31 2020 05:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33386 * 125.20409 * 2 1 4 4 C 1.38420 * 114.91941 * 179.97438 * 3 2 1 5 5 C 1.33387 * 114.92540 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.20536 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.46922 * 90.00273 * 6 5 4 8 8 C 1.46899 * 111.00091 * 293.95134 * 7 6 5 9 9 C 1.46899 * 110.99742 * 169.99973 * 7 6 5 10 10 C 1.53009 * 109.47061 * 209.38482 * 9 7 6 11 11 C 1.53006 * 109.46562 * 300.33883 * 10 9 7 12 12 C 1.52996 * 109.47083 * 60.33659 * 10 9 7 13 13 C 1.53004 * 109.47124 * 180.34462 * 10 9 7 14 14 C 1.50693 * 109.46670 * 179.97438 * 13 10 9 15 15 H 1.07995 * 120.00393 * 359.97438 * 14 13 10 16 16 C 1.37882 * 119.99716 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99759 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00002 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47159 * 60.00234 * 18 16 14 20 20 H 1.48498 * 109.47385 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47123 * 300.00250 * 18 16 14 22 22 S 1.75885 * 125.19929 * 179.68788 * 2 1 3 23 23 H 1.09000 * 109.46899 * 90.00478 * 1 2 3 24 24 H 1.08996 * 109.47185 * 330.00385 * 1 2 3 25 25 H 1.08998 * 109.47172 * 210.00248 * 1 2 3 26 26 H 1.07996 * 122.53931 * 359.95323 * 3 2 1 27 27 H 1.08000 * 122.53961 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.47390 * 209.99774 * 6 5 4 29 29 H 1.08999 * 109.47203 * 330.00269 * 6 5 4 30 30 H 1.08999 * 109.46577 * 67.58370 * 8 7 6 31 31 H 1.08993 * 109.47370 * 187.58203 * 8 7 6 32 32 H 1.08994 * 109.47073 * 307.58548 * 8 7 6 33 33 H 1.08996 * 109.47578 * 329.38056 * 9 7 6 34 34 H 1.09001 * 109.47520 * 89.38361 * 9 7 6 35 35 H 1.09000 * 109.46621 * 68.65978 * 11 10 9 36 36 H 1.09004 * 109.46747 * 188.65697 * 11 10 9 37 37 H 1.08993 * 109.47497 * 308.65785 * 11 10 9 38 38 H 1.09001 * 109.46672 * 60.00592 * 12 10 9 39 39 H 1.08999 * 109.46929 * 180.02562 * 12 10 9 40 40 H 1.08993 * 109.47805 * 300.00143 * 12 10 9 41 41 H 1.09001 * 109.46280 * 299.99561 * 13 10 9 42 42 H 1.08998 * 109.47099 * 59.99360 * 13 10 9 43 43 H 0.97001 * 119.99698 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 3.9751 -0.4478 0.0016 6 6 5.3861 -0.9771 0.0018 7 7 5.8447 -1.1481 1.3869 8 6 5.9578 0.1487 2.0678 9 6 7.1175 -1.8799 1.4334 10 6 7.2084 -2.6622 2.7453 11 6 7.1269 -1.6911 3.9248 12 6 6.0512 -3.6599 2.8252 13 6 8.5379 -3.4177 2.7975 14 6 8.6275 -4.1876 4.0898 15 1 7.8175 -4.1424 4.8027 16 6 9.7437 -4.9500 4.3621 17 7 10.7302 -5.0047 3.4941 18 14 9.8546 -5.9050 5.9636 19 1 8.7313 -6.8731 6.0414 20 1 11.1450 -6.6381 6.0145 21 1 9.7759 -4.9624 7.1085 22 16 2.5209 -1.4372 0.0078 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8899 0.5139 26 1 1.8670 2.0894 -0.0007 27 1 4.3721 1.6349 0.0002 28 1 5.4136 -1.9385 -0.5113 29 1 6.0388 -0.2719 -0.5127 30 1 4.9645 0.5776 2.1997 31 1 6.4250 0.0078 3.0424 32 1 6.5678 0.8227 1.4665 33 1 7.1695 -2.5723 0.5933 34 1 7.9454 -1.1734 1.3737 35 1 6.1244 -1.2666 3.9773 36 1 7.3447 -2.2244 4.8502 37 1 7.8537 -0.8905 3.7872 38 1 6.1093 -4.3517 1.9849 39 1 6.1157 -4.2169 3.7600 40 1 5.1041 -3.1218 2.7880 41 1 8.5958 -4.1095 1.9572 42 1 9.3622 -2.7068 2.7405 43 1 11.5157 -5.5407 3.6858 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093049492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:43 Heat of formation + Delta-G solvation = 10.168107 kcal Electronic energy + Delta-G solvation = -20081.147930 eV Core-core repulsion = 17252.100425 eV Total energy + Delta-G solvation = -2829.047505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01138 -38.72728 -36.53316 -34.35563 -32.82649 -29.85860 -29.01459 -28.60611 -27.47847 -25.96770 -24.89558 -23.68608 -22.46617 -19.76702 -19.48970 -18.30019 -17.72032 -16.79914 -16.39021 -16.23870 -16.12909 -15.31052 -14.82979 -14.65447 -14.39654 -14.36142 -13.92584 -13.89229 -13.68025 -13.45280 -13.35907 -12.92147 -12.81237 -12.69543 -12.50352 -12.39051 -12.26289 -12.24091 -12.14578 -12.00228 -11.69041 -11.51697 -11.26098 -10.85449 -10.67059 -10.48338 -9.42442 -9.32801 -9.09714 -8.12700 -6.19283 0.10956 0.76101 1.18899 1.41391 1.43552 1.50826 1.85663 2.44739 3.13052 3.21100 3.87722 4.05798 4.07087 4.21434 4.25004 4.42663 4.46706 4.50106 4.62610 4.65603 4.75571 4.78053 4.79046 4.83863 4.88869 5.01577 5.08022 5.11190 5.13792 5.21949 5.26828 5.31936 5.41123 5.53859 5.55638 5.62312 5.67287 5.69648 5.88784 5.94912 6.11595 6.19909 6.39801 6.95435 7.47661 8.99401 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034697 B = 0.003406 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.792872 B = 8217.823977 C = 8468.678745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.187 4.187 3 C -0.149 4.149 4 C -0.134 4.134 5 C -0.174 4.174 6 C 0.124 3.876 7 N -0.533 5.533 8 C 0.008 3.992 9 C 0.076 3.924 10 C -0.048 4.048 11 C -0.122 4.122 12 C -0.105 4.105 13 C 0.041 3.959 14 C -0.514 4.514 15 H 0.064 0.936 16 C -0.003 4.003 17 N -0.938 5.938 18 Si 0.954 3.046 19 H -0.269 1.269 20 H -0.287 1.287 21 H -0.268 1.268 22 S 0.087 5.913 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.156 0.844 27 H 0.145 0.855 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.029 0.971 39 H 0.037 0.963 40 H 0.062 0.938 41 H -0.016 1.016 42 H -0.015 1.015 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.059 13.175 -7.817 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.304 4.304 3 C -0.179 4.179 4 C -0.166 4.166 5 C -0.291 4.291 6 C -0.005 4.005 7 N -0.256 5.256 8 C -0.140 4.140 9 C -0.052 4.052 10 C -0.049 4.049 11 C -0.179 4.179 12 C -0.162 4.162 13 C 0.004 3.996 14 C -0.552 4.552 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.579 5.579 18 Si 0.780 3.220 19 H -0.194 1.194 20 H -0.213 1.213 21 H -0.193 1.193 22 S 0.351 5.649 23 H 0.102 0.898 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.174 0.826 27 H 0.162 0.838 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.525 11.262 -7.591 23.784 hybrid contribution 1.743 1.136 0.184 2.089 sum -17.782 12.398 -7.407 22.908 Atomic orbital electron populations 1.20417 0.86172 1.03879 1.03534 1.24893 1.01128 0.95292 1.09129 1.20251 0.92532 1.00057 1.05069 1.20263 0.96926 0.95660 1.03702 1.24266 0.98013 0.96594 1.10255 1.20566 0.89610 1.00490 0.89867 1.61885 1.29196 1.19892 1.14675 1.22894 1.01817 0.89006 1.00274 1.22076 0.89068 0.96078 0.97935 1.20426 0.95498 0.94956 0.93990 1.21893 1.00336 0.97757 0.97875 1.21472 0.97387 0.97525 0.99807 1.18989 0.91924 0.93505 0.95196 1.21587 1.02517 1.26971 1.04141 0.91751 1.25897 0.95760 0.98207 1.00130 1.70099 1.08151 1.42238 1.37428 0.85658 0.77220 0.78940 0.80200 1.19402 1.21317 1.19299 1.84440 0.97002 1.10396 1.73095 0.89764 0.89181 0.91199 0.82608 0.83758 0.90419 0.92441 0.91080 0.89718 0.95434 0.92217 0.95057 0.91210 0.94013 0.94056 0.95180 0.94419 0.91896 0.99737 0.99695 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.38 71.24 0.74 -0.27 16 2 C -0.19 -3.48 6.51 24.59 0.16 -3.32 16 3 C -0.15 -2.70 10.05 21.21 0.21 -2.49 16 4 C -0.13 -2.72 8.80 21.21 0.19 -2.54 16 5 C -0.17 -4.05 5.44 24.59 0.13 -3.91 16 6 C 0.12 3.10 5.39 85.56 0.46 3.56 16 7 N -0.53 -15.29 3.77 -927.05 -3.49 -18.78 16 8 C 0.01 0.19 8.33 127.69 1.06 1.26 16 9 C 0.08 2.63 4.24 86.31 0.37 2.99 16 10 C -0.05 -1.95 0.60 -52.18 -0.03 -1.98 16 11 C -0.12 -4.56 6.67 71.98 0.48 -4.07 16 12 C -0.10 -4.12 8.06 71.98 0.58 -3.54 16 13 C 0.04 2.16 4.04 29.85 0.12 2.28 16 14 C -0.51 -28.74 7.53 25.60 0.19 -28.55 16 15 H 0.06 3.47 5.72 -2.91 -0.02 3.45 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 17 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 18 Si 0.95 44.82 29.54 68.60 2.03 46.85 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 S 0.09 1.97 23.31 -56.49 -1.32 0.65 16 23 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 27 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 28 H 0.08 2.00 7.79 -2.38 -0.02 1.98 16 29 H 0.06 1.33 8.04 -2.39 -0.02 1.31 16 30 H 0.07 1.69 6.78 -2.39 -0.02 1.68 16 31 H 0.08 2.30 3.89 -2.39 -0.01 2.29 16 32 H 0.03 0.65 8.03 -2.39 -0.02 0.63 16 33 H 0.06 2.09 7.57 -2.39 -0.02 2.07 16 34 H 0.03 1.09 7.85 -2.39 -0.02 1.07 16 35 H 0.07 2.27 6.21 -2.39 -0.01 2.26 16 36 H 0.04 1.72 6.38 -2.38 -0.02 1.71 16 37 H 0.04 1.49 7.47 -2.39 -0.02 1.47 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 40 H 0.06 2.23 7.61 -2.39 -0.02 2.21 16 41 H -0.02 -0.91 8.14 -2.39 -0.02 -0.92 16 42 H -0.02 -0.88 8.14 -2.39 -0.02 -0.89 16 43 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -63.58 345.96 3.60 -59.99 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.97 Total: 8.97 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 5.13 Total: -40.30 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -3.21 Total: -76.16 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.32 Total: 0.65 kcal Total: -63.58 3.60 -59.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093049492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.154 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds