Wall clock time and date at job start Tue Mar 31 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33392 * 125.20491 * 2 1 4 4 C 1.38422 * 114.92373 * 179.97438 * 3 2 1 5 5 C 1.33384 * 114.91877 * 0.02562 * 4 3 2 6 6 C 1.50709 * 125.20087 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47323 * 89.99779 * 6 5 4 8 8 C 1.46903 * 110.99983 * 66.04143 * 7 6 5 9 9 C 1.50699 * 109.46946 * 62.84010 * 8 7 6 10 10 H 1.08005 * 119.99676 * 4.65018 * 9 8 7 11 11 C 1.37875 * 120.00351 * 184.64163 * 9 8 7 12 12 N 1.31513 * 120.00380 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99474 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47523 * 90.00084 * 13 11 9 15 15 H 1.48512 * 109.46882 * 209.99812 * 13 11 9 16 16 H 1.48496 * 109.47324 * 329.99455 * 13 11 9 17 17 C 1.46895 * 111.00192 * 190.00356 * 7 6 5 18 18 C 1.52994 * 109.47500 * 163.94914 * 17 7 6 19 19 C 1.53004 * 109.47205 * 178.05010 * 18 17 7 20 20 C 1.52994 * 109.46954 * 65.00045 * 19 18 17 21 21 C 1.52998 * 109.46727 * 184.99692 * 19 18 17 22 22 S 1.75879 * 109.59518 * 359.75203 * 5 4 3 23 23 H 1.08999 * 109.46724 * 89.99951 * 1 2 3 24 24 H 1.08999 * 109.47423 * 330.00084 * 1 2 3 25 25 H 1.08997 * 109.47021 * 209.99914 * 1 2 3 26 26 H 1.08002 * 122.53700 * 359.95430 * 3 2 1 27 27 H 1.07997 * 122.53988 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.46709 * 209.99880 * 6 5 4 29 29 H 1.08992 * 109.47015 * 329.99487 * 6 5 4 30 30 H 1.09001 * 109.46928 * 182.83670 * 8 7 6 31 31 H 1.08998 * 109.47524 * 302.83617 * 8 7 6 32 32 H 0.96999 * 119.99836 * 180.02562 * 12 11 9 33 33 H 1.09007 * 109.46508 * 283.94374 * 17 7 6 34 34 H 1.09000 * 109.47436 * 43.94220 * 17 7 6 35 35 H 1.08999 * 109.47272 * 298.05202 * 18 17 7 36 36 H 1.09007 * 109.47584 * 58.04876 * 18 17 7 37 37 H 1.08997 * 109.46993 * 304.99665 * 19 18 17 38 38 H 1.08997 * 109.47581 * 59.99980 * 20 19 18 39 39 H 1.08998 * 109.47456 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.46950 * 300.00026 * 20 19 18 41 41 H 1.09000 * 109.47574 * 60.00491 * 21 19 18 42 42 H 1.09008 * 109.46998 * 180.02562 * 21 19 18 43 43 H 1.09002 * 109.47800 * 299.99766 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 7 5.8446 -1.1491 1.3854 8 6 5.0771 -2.1997 2.0673 9 6 5.3072 -3.5189 1.3760 10 1 6.0157 -3.5863 0.5636 11 6 4.6136 -4.6396 1.7806 12 7 4.8140 -5.7907 1.1769 13 14 3.3879 -4.5226 3.1854 14 1 2.0452 -4.1913 2.6447 15 1 3.3269 -5.8238 3.8987 16 1 3.8172 -3.4601 4.1298 17 6 7.2848 -1.4349 1.4315 18 6 7.8034 -1.2138 2.8538 19 6 9.2930 -1.5582 2.9128 20 6 10.0780 -0.5781 2.0389 21 6 9.7827 -1.4573 4.3588 22 16 2.5210 -1.4371 0.0068 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 1.8669 2.0895 -0.0007 27 1 4.3721 1.6350 0.0002 28 1 5.4136 -1.9379 -0.5134 29 1 6.0388 -0.2714 -0.5134 30 1 5.4026 -2.2718 3.1051 31 1 4.0159 -1.9532 2.0357 32 1 4.3256 -6.5790 1.4614 33 1 7.4592 -2.4701 1.1380 34 1 7.8094 -0.7695 0.7459 35 1 7.6603 -0.1704 3.1347 36 1 7.2547 -1.8544 3.5444 37 1 9.4458 -2.5737 2.5475 38 1 9.9251 0.4374 2.4042 39 1 11.1392 -0.8231 2.0812 40 1 9.7290 -0.6500 1.0088 41 1 9.2235 -2.1556 4.9815 42 1 10.8441 -1.7022 4.4008 43 1 9.6299 -0.4418 4.7242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:46 Heat of formation + Delta-G solvation = 13.187160 kcal Electronic energy + Delta-G solvation = -20338.270403 eV Core-core repulsion = 17509.353813 eV Total energy + Delta-G solvation = -2828.916589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.08172 -37.12418 -35.42394 -32.47990 -31.78880 -29.12950 -28.27320 -26.93280 -26.10677 -23.60566 -22.98872 -22.11016 -19.96198 -19.35554 -18.11019 -17.02905 -16.22060 -15.28990 -15.01176 -14.61109 -14.23083 -14.16117 -13.65017 -13.51163 -13.14083 -12.99541 -12.62876 -12.46920 -12.28843 -12.00780 -11.90855 -11.65789 -11.53892 -11.44384 -11.13936 -10.87128 -10.84342 -10.66847 -10.37831 -10.26483 -10.19493 -10.06102 -9.93014 -9.71002 -9.51268 -8.59101 -7.99992 -7.83745 -7.18205 -6.10940 -4.09715 1.49724 2.17784 2.63449 3.20301 3.28497 3.35717 3.40517 4.40532 4.87662 5.18519 5.22515 5.23415 5.27940 5.37403 5.45648 5.48203 5.65966 5.79913 5.82042 5.85271 5.90452 5.96582 6.01160 6.04990 6.09736 6.16919 6.20248 6.27075 6.36493 6.39917 6.54730 6.61206 6.67405 6.78958 6.81005 6.93830 6.97580 7.05268 7.16020 7.56949 8.01807 8.09327 8.43429 8.90344 9.53135 11.01795 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.006495 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.323287 B = 4310.273470 C = 5789.625655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.215 4.215 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.141 4.141 6 C 0.124 3.876 7 N -0.530 5.530 8 C 0.146 3.854 9 C -0.546 4.546 10 H 0.074 0.926 11 C 0.079 3.921 12 N -0.897 5.897 13 Si 0.864 3.136 14 H -0.271 1.271 15 H -0.287 1.287 16 H -0.264 1.264 17 C 0.058 3.942 18 C -0.103 4.103 19 C -0.097 4.097 20 C -0.145 4.145 21 C -0.144 4.144 22 S 0.139 5.861 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 11.957 -0.399 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.332 4.332 3 C -0.172 4.172 4 C -0.175 4.175 5 C -0.259 4.259 6 C -0.006 4.006 7 N -0.253 5.253 8 C 0.019 3.981 9 C -0.585 4.585 10 H 0.092 0.908 11 C -0.123 4.123 12 N -0.535 5.535 13 Si 0.691 3.309 14 H -0.196 1.196 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.070 4.070 18 C -0.141 4.141 19 C -0.116 4.116 20 C -0.202 4.202 21 C -0.201 4.201 22 S 0.404 5.596 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.145 0.855 27 H 0.150 0.850 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.119 10.649 -0.143 10.651 hybrid contribution -0.270 0.575 0.371 0.736 sum -0.389 11.225 0.228 11.234 Atomic orbital electron populations 1.20233 0.88704 1.02534 1.02041 1.24629 0.99823 0.97519 1.11276 1.19910 0.93076 0.98484 1.05723 1.19914 0.95672 0.95852 1.06016 1.24434 0.98838 0.95897 1.06758 1.20447 0.88559 0.99703 0.91847 1.62484 1.03442 1.46178 1.13202 1.20330 0.94022 0.88881 0.94899 1.21579 1.25106 0.92657 1.19159 0.90779 1.24856 0.96314 0.95208 0.95969 1.69914 1.42185 0.99985 1.41455 0.86998 0.82692 0.77661 0.83536 1.19637 1.21326 1.18819 1.22032 0.88279 1.00349 0.96339 1.21523 0.93583 1.01222 0.97741 1.21098 0.95578 0.99769 0.95189 1.21862 0.99137 0.99119 1.00085 1.21814 1.00268 1.01444 0.96608 1.85007 0.95951 1.07268 1.71349 0.91365 0.91254 0.91699 0.85495 0.85023 0.92179 0.91008 0.95321 0.95130 0.92729 0.92807 0.92847 0.92400 0.91613 0.91171 0.93061 0.93488 0.92512 0.92745 0.93303 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.38 36.01 0.37 -0.57 16 2 C -0.21 -3.42 6.51 -36.00 -0.23 -3.65 16 3 C -0.14 -2.15 10.05 -41.21 -0.41 -2.57 16 4 C -0.14 -2.37 10.05 -41.21 -0.41 -2.79 16 5 C -0.14 -2.64 5.26 -36.00 -0.19 -2.83 16 6 C 0.12 2.39 5.27 -4.97 -0.03 2.36 16 7 N -0.53 -10.84 4.66 -237.52 -1.11 -11.94 16 8 C 0.15 3.45 3.82 -4.97 -0.02 3.44 16 9 C -0.55 -14.66 7.89 -34.44 -0.27 -14.93 16 10 H 0.07 2.16 6.20 -52.48 -0.33 1.83 16 11 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 12 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 13 Si 0.86 21.45 27.38 -169.99 -4.65 16.80 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.26 -6.38 6.68 56.52 0.38 -6.00 16 17 C 0.06 1.08 4.51 -3.83 -0.02 1.06 16 18 C -0.10 -1.72 4.76 -26.73 -0.13 -1.85 16 19 C -0.10 -1.39 2.92 -90.62 -0.26 -1.65 16 20 C -0.14 -1.79 8.95 37.15 0.33 -1.46 16 21 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 22 S 0.14 2.68 21.79 -107.50 -2.34 0.34 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.06 1.31 6.58 -51.93 -0.34 0.97 16 29 H 0.07 1.20 7.86 -51.93 -0.41 0.80 16 30 H 0.03 0.71 6.01 -51.93 -0.31 0.40 16 31 H 0.03 0.75 5.05 -51.93 -0.26 0.49 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.05 1.15 6.16 -51.92 -0.32 0.83 16 34 H 0.05 0.88 6.32 -51.93 -0.33 0.55 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.24 6.68 -51.93 -0.35 0.90 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.72 6.61 -51.93 -0.34 0.37 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -29.01 347.01 -10.35 -39.35 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.22 Total: 1.06 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -1.03 Total: -24.79 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.33 Total: -37.99 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.65 Total: 16.80 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.34 Total: 0.34 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.01 -10.35 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.541 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds